Protein–RNA interactions for Protein: Q8NDP4

ZNF439, Zinc finger protein 439, humanhuman

Predictions only

Length 499 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF439Q8NDP4 RNY3P8-201ENST00000411366 126 ntBASIC-1.63□□□□□ -2.67
ZNF439Q8NDP4 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.63□□□□□ -2.67
ZNF439Q8NDP4 AP001094.1-201ENST00000579805 193 ntBASIC-1.63□□□□□ -2.67
ZNF439Q8NDP4 MIR548W-201ENST00000581970 74 ntBASIC-1.63□□□□□ -2.67
ZNF439Q8NDP4 SNORD113.1-201ENST00000363280 73 ntBASIC-1.64□□□□□ -2.67
ZNF439Q8NDP4 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.64□□□□□ -2.67
ZNF439Q8NDP4 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.64□□□□□ -2.67
ZNF439Q8NDP4 SNORD63.2-201ENST00000516303 64 ntBASIC-1.64□□□□□ -2.67
ZNF439Q8NDP4 MIR664A-201ENST00000626086 82 ntBASIC-1.64□□□□□ -2.67
ZNF439Q8NDP4 MIR548BB-201ENST00000626714 66 ntBASIC-1.64□□□□□ -2.67
ZNF439Q8NDP4 MIR7978-201ENST00000636158 59 ntBASIC-1.64□□□□□ -2.67
ZNF439Q8NDP4 RNY4P27-201ENST00000363341 96 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 RNA5SP215-201ENST00000363440 122 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 SNORD116-14-201ENST00000383894 92 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 SNORD116-17-201ENST00000383929 92 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 SNORD116-15-201ENST00000384445 92 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 SNORD45A-201ENST00000384512 84 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 SNORD116-19-201ENST00000384729 92 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 snoU13.10-201ENST00000459301 103 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 AL627230.5-201ENST00000619807 58 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.65□□□□□ -2.67
ZNF439Q8NDP4 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.66□□□□□ -2.68
ZNF439Q8NDP4 SNORA27.2-201ENST00000363365 126 ntBASIC-1.66□□□□□ -2.68
ZNF439Q8NDP4 RNU6-668P-201ENST00000364180 107 ntBASIC-1.66□□□□□ -2.68
ZNF439Q8NDP4 RNU6-402P-201ENST00000410678 103 ntBASIC-1.66□□□□□ -2.68
ZNF439Q8NDP4 MTND4LP1-201ENST00000446263 157 ntBASIC-1.66□□□□□ -2.68
ZNF439Q8NDP4 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.67□□□□□ -2.68
ZNF439Q8NDP4 MT-TG-201ENST00000387429 68 ntBASIC-1.67□□□□□ -2.68
ZNF439Q8NDP4 RNY4P18-201ENST00000391107 89 ntBASIC-1.67□□□□□ -2.68
ZNF439Q8NDP4 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.67□□□□□ -2.68
ZNF439Q8NDP4 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.67□□□□□ -2.68
ZNF439Q8NDP4 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 RNY1P5-201ENST00000383890 115 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 MIR581-201ENST00000384895 96 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 MIR125B1-201ENST00000385236 88 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 RNU6-172P-201ENST00000411000 93 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 RNU6-523P-201ENST00000516304 54 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 AP001318.4-201ENST00000616637 121 ntBASIC-1.68□□□□□ -2.68
ZNF439Q8NDP4 SNORD114-3-201ENST00000364969 75 ntBASIC-1.69□□□□□ -2.68
ZNF439Q8NDP4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.69□□□□□ -2.68
ZNF439Q8NDP4 RNU6-995P-201ENST00000391244 107 ntBASIC-1.69□□□□□ -2.68
ZNF439Q8NDP4 RNA5SP405-201ENST00000363059 114 ntBASIC-1.7□□□□□ -2.68
ZNF439Q8NDP4 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.7□□□□□ -2.68
ZNF439Q8NDP4 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.7□□□□□ -2.68
ZNF439Q8NDP4 SNORD116-22-201ENST00000384430 92 ntBASIC-1.7□□□□□ -2.68
ZNF439Q8NDP4 RNU6-1011P-201ENST00000384668 107 ntBASIC-1.7□□□□□ -2.68
ZNF439Q8NDP4 RNU6-129P-201ENST00000391022 107 ntBASIC-1.7□□□□□ -2.68
ZNF439Q8NDP4 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.71□□□□□ -2.68
ZNF439Q8NDP4 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.72□□□□□ -2.68
ZNF439Q8NDP4 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.73□□□□□ -2.69
ZNF439Q8NDP4 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.73□□□□□ -2.69
ZNF439Q8NDP4 MIR8053-201ENST00000613344 75 ntBASIC-1.73□□□□□ -2.69
ZNF439Q8NDP4 RNU6-194P-201ENST00000363862 105 ntBASIC-1.74□□□□□ -2.69
ZNF439Q8NDP4 SNORD116-24-201ENST00000384549 92 ntBASIC-1.74□□□□□ -2.69
ZNF439Q8NDP4 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.74□□□□□ -2.69
ZNF439Q8NDP4 RNU6-118P-201ENST00000516552 102 ntBASIC-1.74□□□□□ -2.69
ZNF439Q8NDP4 MALAT1.1-201ENST00000618249 95 ntBASIC-1.74□□□□□ -2.69
ZNF439Q8NDP4 MIR1297-201ENST00000637311 77 ntBASIC-1.74□□□□□ -2.69
ZNF439Q8NDP4 SNORA63.4-201ENST00000362763 126 ntBASIC-1.75□□□□□ -2.69
ZNF439Q8NDP4 RNU6-589P-201ENST00000516485 107 ntBASIC-1.75□□□□□ -2.69
ZNF439Q8NDP4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.75□□□□□ -2.69
ZNF439Q8NDP4 MIR450A1-201ENST00000362262 91 ntBASIC-1.76□□□□□ -2.69
ZNF439Q8NDP4 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.76□□□□□ -2.69
ZNF439Q8NDP4 RNU6-694P-201ENST00000364071 147 ntBASIC-1.77□□□□□ -2.69
ZNF439Q8NDP4 RNA5SP173-201ENST00000364857 136 ntBASIC-1.77□□□□□ -2.69
ZNF439Q8NDP4 MIR3139-201ENST00000579145 76 ntBASIC-1.77□□□□□ -2.69
ZNF439Q8NDP4 AC006160.2-201ENST00000637708 154 ntBASIC-1.77□□□□□ -2.69
ZNF439Q8NDP4 MIR202-201ENST00000362219 110 ntBASIC-1.78□□□□□ -2.69
ZNF439Q8NDP4 SNORD18C-201ENST00000362704 69 ntBASIC-1.78□□□□□ -2.69
ZNF439Q8NDP4 MIR488-201ENST00000365739 83 ntBASIC-1.78□□□□□ -2.69
ZNF439Q8NDP4 RNU6-675P-201ENST00000384236 104 ntBASIC-1.78□□□□□ -2.69
ZNF439Q8NDP4 MIR496-201ENST00000385226 102 ntBASIC-1.78□□□□□ -2.69
ZNF439Q8NDP4 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.78□□□□□ -2.69
ZNF439Q8NDP4 MIR2052-201ENST00000636055 55 ntBASIC-1.78□□□□□ -2.69
ZNF439Q8NDP4 AL365222.1-201ENST00000614661 98 ntBASIC-1.79□□□□□ -2.7
ZNF439Q8NDP4 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.8□□□□□ -2.7
ZNF439Q8NDP4 RNU6-755P-201ENST00000364400 103 ntBASIC-1.8□□□□□ -2.7
ZNF439Q8NDP4 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.8□□□□□ -2.7
ZNF439Q8NDP4 RNU6-520P-201ENST00000384717 104 ntBASIC-1.8□□□□□ -2.7
ZNF439Q8NDP4 MIR4748-201ENST00000578076 82 ntBASIC-1.8□□□□□ -2.7
ZNF439Q8NDP4 RNU6-959P-201ENST00000384671 107 ntBASIC-1.81□□□□□ -2.7
ZNF439Q8NDP4 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.81□□□□□ -2.7
ZNF439Q8NDP4 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.82□□□□□ -2.7
ZNF439Q8NDP4 RNU6-649P-201ENST00000384463 107 ntBASIC-1.82□□□□□ -2.7
ZNF439Q8NDP4 MIR548N-201ENST00000408742 75 ntBASIC-1.82□□□□□ -2.7
ZNF439Q8NDP4 AC097484.2-201ENST00000509147 251 ntBASIC-1.82□□□□□ -2.7
ZNF439Q8NDP4 MIR466-201ENST00000580653 84 ntBASIC-1.82□□□□□ -2.7
ZNF439Q8NDP4 RNU6-810P-201ENST00000364001 107 ntBASIC-1.83□□□□□ -2.7
ZNF439Q8NDP4 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.83□□□□□ -2.7
ZNF439Q8NDP4 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.83□□□□□ -2.7
ZNF439Q8NDP4 Y_RNA.629-201ENST00000411368 105 ntBASIC-1.83□□□□□ -2.7
ZNF439Q8NDP4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.83□□□□□ -2.7
ZNF439Q8NDP4 AL031737.1-201ENST00000450125 223 ntBASIC-1.83□□□□□ -2.7
ZNF439Q8NDP4 SNORA40.13-201ENST00000516379 120 ntBASIC-1.83□□□□□ -2.7
ZNF439Q8NDP4 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.83□□□□□ -2.7
ZNF439Q8NDP4 Y_RNA.709-201ENST00000516952 92 ntBASIC-1.83□□□□□ -2.7
ZNF439Q8NDP4 RNU6-789P-201ENST00000517105 102 ntBASIC-1.83□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms