Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.43□□□□□ -2.48
SOX9P48436 MIR8068-201ENST00000618032 68 ntBASIC-0.43□□□□□ -2.48
SOX9P48436 MIR196A2-201ENST00000385189 110 ntBASIC-0.44□□□□□ -2.48
SOX9P48436 SNORD75.1-201ENST00000408373 60 ntBASIC-0.44□□□□□ -2.48
SOX9P48436 SNX3P1X-201ENST00000414887 175 ntBASIC-0.44□□□□□ -2.48
SOX9P48436 AC114755.3-201ENST00000481111 251 ntBASIC-0.44□□□□□ -2.48
SOX9P48436 RNU6-924P-201ENST00000362926 108 ntBASIC-0.45□□□□□ -2.48
SOX9P48436 RNA5SP169-201ENST00000517268 117 ntBASIC-0.45□□□□□ -2.48
SOX9P48436 AL445584.3-201ENST00000617173 78 ntBASIC-0.45□□□□□ -2.48
SOX9P48436 AC103706.3-201ENST00000636297 85 ntBASIC-0.45□□□□□ -2.48
SOX9P48436 MIR124-2-201ENST00000385081 109 ntBASIC-0.46□□□□□ -2.48
SOX9P48436 MIR518B-201ENST00000385127 83 ntBASIC-0.46□□□□□ -2.48
SOX9P48436 RNU6-284P-201ENST00000411105 106 ntBASIC-0.46□□□□□ -2.48
SOX9P48436 SNORA13-201ENST00000458790 133 ntBASIC-0.46□□□□□ -2.48
SOX9P48436 MIR6888-201ENST00000621977 67 ntBASIC-0.46□□□□□ -2.48
SOX9P48436 MIR4464-201ENST00000580818 92 ntBASIC-0.47□□□□□ -2.48
SOX9P48436 MIR4723-201ENST00000585070 81 ntBASIC-0.47□□□□□ -2.48
SOX9P48436 RNU6-92P-201ENST00000605893 104 ntBASIC-0.47□□□□□ -2.48
SOX9P48436 SNORD74.6-201ENST00000364796 70 ntBASIC-0.48□□□□□ -2.49
SOX9P48436 MIR4511-201ENST00000582784 87 ntBASIC-0.48□□□□□ -2.49
SOX9P48436 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.49□□□□□ -2.49
SOX9P48436 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.49□□□□□ -2.49
SOX9P48436 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.49□□□□□ -2.49
SOX9P48436 RNU6-458P-201ENST00000384179 107 ntBASIC-0.51□□□□□ -2.49
SOX9P48436 MT-TQ-201ENST00000387372 72 ntBASIC-0.51□□□□□ -2.49
SOX9P48436 SNORD18.2-201ENST00000459604 70 ntBASIC-0.51□□□□□ -2.49
SOX9P48436 U6.58-201ENST00000613107 107 ntBASIC-0.51□□□□□ -2.49
SOX9P48436 SNORD114-14-201ENST00000362723 75 ntBASIC-0.52□□□□□ -2.49
SOX9P48436 MIR548AG1-201ENST00000579932 66 ntBASIC-0.52□□□□□ -2.49
SOX9P48436 MIR3681-201ENST00000580089 72 ntBASIC-0.52□□□□□ -2.49
SOX9P48436 SNORA3B-201ENST00000391305 131 ntBASIC-0.53□□□□□ -2.49
SOX9P48436 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.53□□□□□ -2.49
SOX9P48436 AC021146.6-201ENST00000514659 117 ntBASIC-0.54□□□□□ -2.5
SOX9P48436 SNORD22.1-201ENST00000516331 125 ntBASIC-0.54□□□□□ -2.5
SOX9P48436 MIR4436A-201ENST00000585278 85 ntBASIC-0.54□□□□□ -2.5
SOX9P48436 SNORA25.5-201ENST00000363782 126 ntBASIC-0.55□□□□□ -2.5
SOX9P48436 RNU6-590P-201ENST00000365039 107 ntBASIC-0.55□□□□□ -2.5
SOX9P48436 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.55□□□□□ -2.5
SOX9P48436 SNORD116-16-201ENST00000384533 92 ntBASIC-0.56□□□□□ -2.5
SOX9P48436 MIR3179-1-201ENST00000578940 84 ntBASIC-0.56□□□□□ -2.5
SOX9P48436 MIR3179-2-201ENST00000579107 84 ntBASIC-0.56□□□□□ -2.5
SOX9P48436 MIR3179-3-201ENST00000579566 84 ntBASIC-0.56□□□□□ -2.5
SOX9P48436 MIR3179-4-201ENST00000617599 84 ntBASIC-0.56□□□□□ -2.5
SOX9P48436 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.57□□□□□ -2.5
SOX9P48436 RNU6-471P-201ENST00000383944 106 ntBASIC-0.58□□□□□ -2.5
SOX9P48436 RNU6-246P-201ENST00000384702 107 ntBASIC-0.58□□□□□ -2.5
SOX9P48436 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.59□□□□□ -2.5
SOX9P48436 Y_RNA.386-201ENST00000383913 105 ntBASIC-0.6□□□□□ -2.51
SOX9P48436 SNORA41B-201ENST00000384785 128 ntBASIC-0.6□□□□□ -2.51
SOX9P48436 RNU6-721P-201ENST00000410155 105 ntBASIC-0.6□□□□□ -2.51
SOX9P48436 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.61□□□□□ -2.51
SOX9P48436 AC125388.1-201ENST00000459631 156 ntBASIC-0.61□□□□□ -2.51
SOX9P48436 SNORD60.1-201ENST00000362451 73 ntBASIC-0.62□□□□□ -2.51
SOX9P48436 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.62□□□□□ -2.51
SOX9P48436 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.62□□□□□ -2.51
SOX9P48436 AP000533.3-201ENST00000447704 118 ntBASIC-0.62□□□□□ -2.51
SOX9P48436 RNU7-88P-201ENST00000458752 63 ntBASIC-0.62□□□□□ -2.51
SOX9P48436 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.62□□□□□ -2.51
SOX9P48436 RNU6-940P-201ENST00000363433 104 ntBASIC-0.63□□□□□ -2.51
SOX9P48436 RNA5SP192-201ENST00000364404 120 ntBASIC-0.63□□□□□ -2.51
SOX9P48436 U7.5-201ENST00000517224 61 ntBASIC-0.63□□□□□ -2.51
SOX9P48436 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.64□□□□□ -2.51
SOX9P48436 Y_RNA.340-201ENST00000365330 92 ntBASIC-0.64□□□□□ -2.51
SOX9P48436 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.65□□□□□ -2.51
SOX9P48436 MIR587-201ENST00000384845 96 ntBASIC-0.66□□□□□ -2.52
SOX9P48436 RNU6-122P-201ENST00000516818 107 ntBASIC-0.66□□□□□ -2.52
SOX9P48436 MIR601-201ENST00000385256 79 ntBASIC-0.67□□□□□ -2.52
SOX9P48436 RNU6-696P-201ENST00000390834 107 ntBASIC-0.67□□□□□ -2.52
SOX9P48436 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.68□□□□□ -2.52
SOX9P48436 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.68□□□□□ -2.52
SOX9P48436 SCARNA17-201ENST00000516183 144 ntBASIC-0.69□□□□□ -2.52
SOX9P48436 MIR4320-201ENST00000636981 65 ntBASIC-0.69□□□□□ -2.52
SOX9P48436 MIR198-201ENST00000637333 62 ntBASIC-0.69□□□□□ -2.52
SOX9P48436 AC139453.2-201ENST00000487255 133 ntBASIC-0.7□□□□□ -2.52
SOX9P48436 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.7□□□□□ -2.52
SOX9P48436 AC110620.1-201ENST00000416042 228 ntBASIC-0.71□□□□□ -2.52
SOX9P48436 RNU6-732P-201ENST00000516033 103 ntBASIC-0.71□□□□□ -2.52
SOX9P48436 SNORD114-17-201ENST00000364699 75 ntBASIC-0.73□□□□□ -2.53
SOX9P48436 MIR196A1-201ENST00000388006 70 ntBASIC-0.73□□□□□ -2.53
SOX9P48436 SNORD63.1-201ENST00000516178 80 ntBASIC-0.73□□□□□ -2.53
SOX9P48436 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.73□□□□□ -2.53
SOX9P48436 RNU6-598P-201ENST00000364017 105 ntBASIC-0.74□□□□□ -2.53
SOX9P48436 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-0.74□□□□□ -2.53
SOX9P48436 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.74□□□□□ -2.53
SOX9P48436 MIR466-201ENST00000580653 84 ntBASIC-0.74□□□□□ -2.53
SOX9P48436 MIR6738-201ENST00000619620 64 ntBASIC-0.74□□□□□ -2.53
SOX9P48436 SNORD114-25-201ENST00000363742 72 ntBASIC-0.75□□□□□ -2.53
SOX9P48436 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.75□□□□□ -2.53
SOX9P48436 MIR4324-201ENST00000584846 72 ntBASIC-0.75□□□□□ -2.53
SOX9P48436 SNORD1B-201ENST00000363091 84 ntBASIC-0.76□□□□□ -2.53
SOX9P48436 U4.2-201ENST00000618561 85 ntBASIC-0.76□□□□□ -2.53
SOX9P48436 RNU6-669P-201ENST00000365575 107 ntBASIC-0.77□□□□□ -2.53
SOX9P48436 SNORA26.4-201ENST00000391188 123 ntBASIC-0.77□□□□□ -2.53
SOX9P48436 RNU6-431P-201ENST00000383874 107 ntBASIC-0.78□□□□□ -2.53
SOX9P48436 RNU6-10P-201ENST00000384036 107 ntBASIC-0.78□□□□□ -2.53
SOX9P48436 MIR147A-201ENST00000385079 72 ntBASIC-0.78□□□□□ -2.53
SOX9P48436 SNORD64-201ENST00000386683 67 ntBASIC-0.78□□□□□ -2.53
SOX9P48436 MIR548Q-201ENST00000408404 100 ntBASIC-0.78□□□□□ -2.53
SOX9P48436 RNU6-172P-201ENST00000411000 93 ntBASIC-0.78□□□□□ -2.53
SOX9P48436 U2.18-201ENST00000622185 84 ntBASIC-0.78□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms