Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL606753.1-201ENST00000427435 87 ntBASIC-1.6□□□□□ -2.67
VPS28Q9UK41 RNU6-303P-201ENST00000517091 106 ntBASIC-1.6□□□□□ -2.67
VPS28Q9UK41 RNU6-497P-201ENST00000365316 104 ntBASIC-1.61□□□□□ -2.67
VPS28Q9UK41 SNX3P1X-201ENST00000414887 175 ntBASIC-1.61□□□□□ -2.67
VPS28Q9UK41 AC138207.3-201ENST00000585289 166 ntBASIC-1.61□□□□□ -2.67
VPS28Q9UK41 HLA-S-202ENST00000425174 53 ntBASIC-1.62□□□□□ -2.67
VPS28Q9UK41 RNA5SP180-201ENST00000516181 101 ntBASIC-1.62□□□□□ -2.67
VPS28Q9UK41 RNU6-267P-201ENST00000516714 103 ntBASIC-1.62□□□□□ -2.67
VPS28Q9UK41 RNU6-645P-201ENST00000364649 106 ntBASIC-1.63□□□□□ -2.67
VPS28Q9UK41 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.63□□□□□ -2.67
VPS28Q9UK41 RNU6-807P-201ENST00000516805 107 ntBASIC-1.63□□□□□ -2.67
VPS28Q9UK41 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 RNU6-686P-201ENST00000364839 107 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 SNORA26.4-201ENST00000391188 123 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 MIR3675-201ENST00000583661 73 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 U2.7-201ENST00000619197 100 ntBASIC-1.64□□□□□ -2.67
VPS28Q9UK41 SNORD115-33-201ENST00000363723 82 ntBASIC-1.65□□□□□ -2.67
VPS28Q9UK41 RNU6-226P-201ENST00000363778 107 ntBASIC-1.65□□□□□ -2.67
VPS28Q9UK41 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.65□□□□□ -2.67
VPS28Q9UK41 SNORA63.4-201ENST00000362763 126 ntBASIC-1.66□□□□□ -2.68
VPS28Q9UK41 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.66□□□□□ -2.68
VPS28Q9UK41 SNORA8.1-201ENST00000384250 140 ntBASIC-1.66□□□□□ -2.68
VPS28Q9UK41 RNU6-919P-201ENST00000516731 104 ntBASIC-1.66□□□□□ -2.68
VPS28Q9UK41 RNU6-640P-201ENST00000363693 105 ntBASIC-1.67□□□□□ -2.68
VPS28Q9UK41 MIR488-201ENST00000365739 83 ntBASIC-1.67□□□□□ -2.68
VPS28Q9UK41 RNU6-215P-201ENST00000365169 102 ntBASIC-1.68□□□□□ -2.68
VPS28Q9UK41 RNU6-147P-201ENST00000383983 107 ntBASIC-1.68□□□□□ -2.68
VPS28Q9UK41 RNU6-129P-201ENST00000391022 107 ntBASIC-1.68□□□□□ -2.68
VPS28Q9UK41 RNU6-789P-201ENST00000517105 102 ntBASIC-1.68□□□□□ -2.68
VPS28Q9UK41 MIR548C-201ENST00000384815 97 ntBASIC-1.69□□□□□ -2.68
VPS28Q9UK41 RNU6-675P-201ENST00000384236 104 ntBASIC-1.7□□□□□ -2.68
VPS28Q9UK41 RNU6-844P-201ENST00000517175 102 ntBASIC-1.7□□□□□ -2.68
VPS28Q9UK41 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.7□□□□□ -2.68
VPS28Q9UK41 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 RNU6-330P-201ENST00000363015 107 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 AC074348.1-201ENST00000426503 132 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 SNORD63.1-201ENST00000516178 80 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 MIR5591-201ENST00000578248 65 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 MIR1246-201ENST00000636535 73 ntBASIC-1.71□□□□□ -2.68
VPS28Q9UK41 SNORD20-201ENST00000384550 80 ntBASIC-1.72□□□□□ -2.68
VPS28Q9UK41 MIR8485-201ENST00000401372 91 ntBASIC-1.72□□□□□ -2.68
VPS28Q9UK41 RNU6-380P-201ENST00000410207 107 ntBASIC-1.72□□□□□ -2.68
VPS28Q9UK41 AC006160.2-201ENST00000637708 154 ntBASIC-1.72□□□□□ -2.68
VPS28Q9UK41 MIR1285-2-201ENST00000408311 88 ntBASIC-1.73□□□□□ -2.69
VPS28Q9UK41 RNU6-478P-201ENST00000363904 110 ntBASIC-1.74□□□□□ -2.69
VPS28Q9UK41 RNU6-604P-201ENST00000390917 100 ntBASIC-1.74□□□□□ -2.69
VPS28Q9UK41 AL353691.2-201ENST00000443795 59 ntBASIC-1.74□□□□□ -2.69
VPS28Q9UK41 MIR1297-201ENST00000637311 77 ntBASIC-1.74□□□□□ -2.69
VPS28Q9UK41 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.75□□□□□ -2.69
VPS28Q9UK41 MIR198-201ENST00000637333 62 ntBASIC-1.75□□□□□ -2.69
VPS28Q9UK41 MIR601-201ENST00000385256 79 ntBASIC-1.76□□□□□ -2.69
VPS28Q9UK41 RNU7-134P-201ENST00000458997 64 ntBASIC-1.76□□□□□ -2.69
VPS28Q9UK41 RNU6-732P-201ENST00000516033 103 ntBASIC-1.76□□□□□ -2.69
VPS28Q9UK41 SNORD45.1-201ENST00000363181 77 ntBASIC-1.78□□□□□ -2.69
VPS28Q9UK41 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.78□□□□□ -2.69
VPS28Q9UK41 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.79□□□□□ -2.7
VPS28Q9UK41 MIR1468-201ENST00000410600 86 ntBASIC-1.79□□□□□ -2.7
VPS28Q9UK41 MIR4770-201ENST00000579149 58 ntBASIC-1.79□□□□□ -2.7
VPS28Q9UK41 MIR548AG1-201ENST00000579932 66 ntBASIC-1.79□□□□□ -2.7
VPS28Q9UK41 Y_RNA.17-201ENST00000362433 111 ntBASIC-1.8□□□□□ -2.7
VPS28Q9UK41 SNORD115-22-201ENST00000364456 82 ntBASIC-1.8□□□□□ -2.7
VPS28Q9UK41 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.8□□□□□ -2.7
VPS28Q9UK41 RNU6-246P-201ENST00000384702 107 ntBASIC-1.8□□□□□ -2.7
VPS28Q9UK41 MIR29B1-201ENST00000385015 81 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 RNU7-88P-201ENST00000458752 63 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 RNU7-174P-201ENST00000516248 59 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 U7.5-201ENST00000517224 61 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 MIR548AI-201ENST00000579940 88 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 MIR4441-201ENST00000582623 100 ntBASIC-1.81□□□□□ -2.7
VPS28Q9UK41 MIR365A-201ENST00000362260 87 ntBASIC-1.82□□□□□ -2.7
VPS28Q9UK41 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.82□□□□□ -2.7
VPS28Q9UK41 RNU6-406P-201ENST00000516470 107 ntBASIC-1.82□□□□□ -2.7
VPS28Q9UK41 RNU6-982P-201ENST00000516216 102 ntBASIC-1.83□□□□□ -2.7
VPS28Q9UK41 snoMBII-202.2-201ENST00000517263 86 ntBASIC-1.83□□□□□ -2.7
VPS28Q9UK41 MIR4484-201ENST00000582855 83 ntBASIC-1.83□□□□□ -2.7
VPS28Q9UK41 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.84□□□□□ -2.7
VPS28Q9UK41 IGLL4P-201ENST00000614590 133 ntBASIC-1.84□□□□□ -2.7
VPS28Q9UK41 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 RNU6-540P-201ENST00000384622 101 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 MIR889-201ENST00000401280 79 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 MTND4LP1-201ENST00000446263 157 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 RNU6-168P-201ENST00000516189 101 ntBASIC-1.85□□□□□ -2.71
VPS28Q9UK41 MIR429-201ENST00000362106 83 ntBASIC-1.86□□□□□ -2.71
VPS28Q9UK41 RNU6-44P-201ENST00000384045 107 ntBASIC-1.86□□□□□ -2.71
VPS28Q9UK41 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.86□□□□□ -2.71
VPS28Q9UK41 Y_RNA.593-201ENST00000410292 98 ntBASIC-1.86□□□□□ -2.71
VPS28Q9UK41 MIR4520-1-201ENST00000582609 70 ntBASIC-1.86□□□□□ -2.71
VPS28Q9UK41 RNU6-315P-201ENST00000362666 107 ntBASIC-1.87□□□□□ -2.71
VPS28Q9UK41 RNU4-61P-201ENST00000411243 107 ntBASIC-1.87□□□□□ -2.71
VPS28Q9UK41 MIR8053-201ENST00000613344 75 ntBASIC-1.87□□□□□ -2.71
VPS28Q9UK41 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 RNY1P1-201ENST00000364372 112 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 MIR4490-201ENST00000582647 84 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 MIR6818-201ENST00000621576 65 ntBASIC-1.88□□□□□ -2.71
VPS28Q9UK41 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.88□□□□□ -2.71
VPS28Q9UK41 RNU6-458P-201ENST00000384179 107 ntBASIC-1.89□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 167.8 ms