Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU7-120P-201ENST00000459334 63 ntBASIC-2.07□□□□□ -2.74
SCN3AQ9NY46 RNU6-1107P-201ENST00000364817 104 ntBASIC-2.08□□□□□ -2.74
SCN3AQ9NY46 RNU6-563P-201ENST00000364872 108 ntBASIC-2.08□□□□□ -2.74
SCN3AQ9NY46 Y_RNA.580-201ENST00000391004 95 ntBASIC-2.08□□□□□ -2.74
SCN3AQ9NY46 Y_RNA.193-201ENST00000363979 102 ntBASIC-2.09□□□□□ -2.74
SCN3AQ9NY46 Y_RNA.325-201ENST00000365171 122 ntBASIC-2.09□□□□□ -2.74
SCN3AQ9NY46 RNU4-88P-201ENST00000411220 86 ntBASIC-2.09□□□□□ -2.74
SCN3AQ9NY46 MIR3170-201ENST00000582699 77 ntBASIC-2.09□□□□□ -2.74
SCN3AQ9NY46 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.09□□□□□ -2.74
SCN3AQ9NY46 RNU6-247P-201ENST00000362636 107 ntBASIC-2.1□□□□□ -2.75
SCN3AQ9NY46 Y_RNA.343-201ENST00000365354 112 ntBASIC-2.1□□□□□ -2.75
SCN3AQ9NY46 Y_RNA.586-201ENST00000391146 98 ntBASIC-2.1□□□□□ -2.75
SCN3AQ9NY46 AL450471.1-201ENST00000447509 127 ntBASIC-2.1□□□□□ -2.75
SCN3AQ9NY46 RNU6-1211P-201ENST00000459179 105 ntBASIC-2.1□□□□□ -2.75
SCN3AQ9NY46 SNORD33.1-201ENST00000516213 88 ntBASIC-2.1□□□□□ -2.75
SCN3AQ9NY46 AC012531.4-201ENST00000616509 177 ntBASIC-2.1□□□□□ -2.75
SCN3AQ9NY46 MIR630-201ENST00000384957 97 ntBASIC-2.1□□□□□ -2.75
SCN3AQ9NY46 RNU6-182P-201ENST00000516970 105 ntBASIC-2.1□□□□□ -2.75
SCN3AQ9NY46 Y_RNA.398-201ENST00000383952 99 ntBASIC-2.11□□□□□ -2.75
SCN3AQ9NY46 MIR1302-3-201ENST00000408128 138 ntBASIC-2.11□□□□□ -2.75
SCN3AQ9NY46 Y_RNA.609-201ENST00000410669 89 ntBASIC-2.11□□□□□ -2.75
SCN3AQ9NY46 Y_RNA.257-201ENST00000364596 102 ntBASIC-2.12□□□□□ -2.75
SCN3AQ9NY46 AL158147.1-201ENST00000443970 75 ntBASIC-2.12□□□□□ -2.75
SCN3AQ9NY46 MTND4LP9-201ENST00000427694 174 ntBASIC-2.12□□□□□ -2.75
SCN3AQ9NY46 Y_RNA.720-201ENST00000517166 92 ntBASIC-2.12□□□□□ -2.75
SCN3AQ9NY46 U2.18-201ENST00000622185 84 ntBASIC-2.12□□□□□ -2.75
SCN3AQ9NY46 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.13□□□□□ -2.75
SCN3AQ9NY46 RNU6-645P-201ENST00000364649 106 ntBASIC-2.13□□□□□ -2.75
SCN3AQ9NY46 MIR520D-201ENST00000385002 87 ntBASIC-2.13□□□□□ -2.75
SCN3AQ9NY46 MTATP8P1-201ENST00000467115 207 ntBASIC-2.13□□□□□ -2.75
SCN3AQ9NY46 RNA5SP215-201ENST00000363440 122 ntBASIC-2.13□□□□□ -2.75
SCN3AQ9NY46 RNU7-151P-201ENST00000516930 53 ntBASIC-2.13□□□□□ -2.75
SCN3AQ9NY46 Y_RNA.149-201ENST00000363558 117 ntBASIC-2.14□□□□□ -2.75
SCN3AQ9NY46 Y_RNA.307-201ENST00000365022 117 ntBASIC-2.14□□□□□ -2.75
SCN3AQ9NY46 MIR4748-201ENST00000578076 82 ntBASIC-2.14□□□□□ -2.75
SCN3AQ9NY46 MIR548V-201ENST00000584165 80 ntBASIC-2.14□□□□□ -2.75
SCN3AQ9NY46 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.14□□□□□ -2.75
SCN3AQ9NY46 Y_RNA.489-201ENST00000384410 101 ntBASIC-2.15□□□□□ -2.75
SCN3AQ9NY46 RNU6-587P-201ENST00000391282 106 ntBASIC-2.15□□□□□ -2.75
SCN3AQ9NY46 RNU6-982P-201ENST00000516216 102 ntBASIC-2.15□□□□□ -2.75
SCN3AQ9NY46 RNU6-394P-201ENST00000410735 107 ntBASIC-2.15□□□□□ -2.75
SCN3AQ9NY46 AL157777.2-201ENST00000258070 137 ntBASIC-2.16□□□□□ -2.76
SCN3AQ9NY46 MTND4LP1-201ENST00000446263 157 ntBASIC-2.16□□□□□ -2.76
SCN3AQ9NY46 RNU6-803P-201ENST00000516034 102 ntBASIC-2.16□□□□□ -2.76
SCN3AQ9NY46 SNORD116-16-201ENST00000384533 92 ntBASIC-2.17□□□□□ -2.76
SCN3AQ9NY46 RNU6-1111P-201ENST00000391118 107 ntBASIC-2.17□□□□□ -2.76
SCN3AQ9NY46 RNU6-303P-201ENST00000517091 106 ntBASIC-2.17□□□□□ -2.76
SCN3AQ9NY46 Y_RNA.818-201ENST00000618813 71 ntBASIC-2.17□□□□□ -2.76
SCN3AQ9NY46 RNU6-904P-201ENST00000516206 101 ntBASIC-2.17□□□□□ -2.76
SCN3AQ9NY46 RNU7-153P-201ENST00000516455 62 ntBASIC-2.17□□□□□ -2.76
SCN3AQ9NY46 MIR1297-201ENST00000637311 77 ntBASIC-2.17□□□□□ -2.76
SCN3AQ9NY46 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.18□□□□□ -2.76
SCN3AQ9NY46 SNORD113-2-201ENST00000391082 72 ntBASIC-2.18□□□□□ -2.76
SCN3AQ9NY46 SNORD1B-201ENST00000363091 84 ntBASIC-2.18□□□□□ -2.76
SCN3AQ9NY46 SNORA8.1-201ENST00000384250 140 ntBASIC-2.18□□□□□ -2.76
SCN3AQ9NY46 SNORA40-201ENST00000388090 126 ntBASIC-2.18□□□□□ -2.76
SCN3AQ9NY46 snoU13.10-201ENST00000459301 103 ntBASIC-2.18□□□□□ -2.76
SCN3AQ9NY46 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.19□□□□□ -2.76
SCN3AQ9NY46 MIR568-201ENST00000385036 95 ntBASIC-2.19□□□□□ -2.76
SCN3AQ9NY46 RNU6-1108P-201ENST00000516308 104 ntBASIC-2.2□□□□□ -2.76
SCN3AQ9NY46 SNORD18C-201ENST00000362704 69 ntBASIC-2.2□□□□□ -2.76
SCN3AQ9NY46 Y_RNA.107-201ENST00000363190 121 ntBASIC-2.2□□□□□ -2.76
SCN3AQ9NY46 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.2□□□□□ -2.76
SCN3AQ9NY46 FTX_4.1-201ENST00000616291 147 ntBASIC-2.2□□□□□ -2.76
SCN3AQ9NY46 RNU6-867P-201ENST00000364956 107 ntBASIC-2.21□□□□□ -2.76
SCN3AQ9NY46 RNU6-574P-201ENST00000384265 107 ntBASIC-2.21□□□□□ -2.76
SCN3AQ9NY46 RNU7-107P-201ENST00000459121 61 ntBASIC-2.21□□□□□ -2.76
SCN3AQ9NY46 U7.3-201ENST00000616123 62 ntBASIC-2.21□□□□□ -2.76
SCN3AQ9NY46 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.22□□□□□ -2.76
SCN3AQ9NY46 MIR8053-201ENST00000613344 75 ntBASIC-2.22□□□□□ -2.76
SCN3AQ9NY46 U6.97-201ENST00000636904 101 ntBASIC-2.22□□□□□ -2.76
SCN3AQ9NY46 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.22□□□□□ -2.77
SCN3AQ9NY46 MIR548C-201ENST00000384815 97 ntBASIC-2.22□□□□□ -2.77
SCN3AQ9NY46 RNY4P9-201ENST00000363194 97 ntBASIC-2.23□□□□□ -2.77
SCN3AQ9NY46 Y_RNA.313-201ENST00000365095 103 ntBASIC-2.23□□□□□ -2.77
SCN3AQ9NY46 AC004792.1-201ENST00000614523 137 ntBASIC-2.23□□□□□ -2.77
SCN3AQ9NY46 MIR2052-201ENST00000636055 55 ntBASIC-2.23□□□□□ -2.77
SCN3AQ9NY46 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.24□□□□□ -2.77
SCN3AQ9NY46 MIR569-201ENST00000385228 96 ntBASIC-2.24□□□□□ -2.77
SCN3AQ9NY46 MIR548W-201ENST00000581970 74 ntBASIC-2.24□□□□□ -2.77
SCN3AQ9NY46 Y_RNA.218-201ENST00000364218 104 ntBASIC-2.24□□□□□ -2.77
SCN3AQ9NY46 RNY4P18-201ENST00000391107 89 ntBASIC-2.24□□□□□ -2.77
SCN3AQ9NY46 RNU6-129P-201ENST00000391022 107 ntBASIC-2.25□□□□□ -2.77
SCN3AQ9NY46 MTND5P41-201ENST00000517498 206 ntBASIC-2.25□□□□□ -2.77
SCN3AQ9NY46 RNU6-230P-201ENST00000362457 104 ntBASIC-2.25□□□□□ -2.77
SCN3AQ9NY46 MIR3914-2-201ENST00000637339 95 ntBASIC-2.25□□□□□ -2.77
SCN3AQ9NY46 RNU6-200P-201ENST00000364743 107 ntBASIC-2.26□□□□□ -2.77
SCN3AQ9NY46 RNU6-1081P-201ENST00000384537 107 ntBASIC-2.26□□□□□ -2.77
SCN3AQ9NY46 RNU6-995P-201ENST00000391244 107 ntBASIC-2.26□□□□□ -2.77
SCN3AQ9NY46 SNORD113.1-201ENST00000363280 73 ntBASIC-2.27□□□□□ -2.77
SCN3AQ9NY46 RNU6-669P-201ENST00000365575 107 ntBASIC-2.27□□□□□ -2.77
SCN3AQ9NY46 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.27□□□□□ -2.77
SCN3AQ9NY46 RNU6-797P-201ENST00000363101 109 ntBASIC-2.27□□□□□ -2.77
SCN3AQ9NY46 Y_RNA.93-201ENST00000363066 109 ntBASIC-2.28□□□□□ -2.77
SCN3AQ9NY46 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.28□□□□□ -2.77
SCN3AQ9NY46 RNU6-257P-201ENST00000410238 98 ntBASIC-2.28□□□□□ -2.77
SCN3AQ9NY46 AC013734.1-201ENST00000619329 111 ntBASIC-2.28□□□□□ -2.77
SCN3AQ9NY46 RNU6-633P-201ENST00000362612 103 ntBASIC-2.29□□□□□ -2.78
SCN3AQ9NY46 RNU6-379P-201ENST00000363813 104 ntBASIC-2.29□□□□□ -2.78
SCN3AQ9NY46 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-2.29□□□□□ -2.78
Retrieved 100 of 98,524 protein–RNA pairs in 162.5 ms