Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.85□□□□□ -2.55
LIME1Q9H400 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.86□□□□□ -2.55
LIME1Q9H400 AL021921.1-201ENST00000442774 93 ntBASIC-0.86□□□□□ -2.55
LIME1Q9H400 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.86□□□□□ -2.55
LIME1Q9H400 RNU6-330P-201ENST00000363015 107 ntBASIC-0.87□□□□□ -2.55
LIME1Q9H400 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.87□□□□□ -2.55
LIME1Q9H400 MIR519A2-201ENST00000384990 87 ntBASIC-0.87□□□□□ -2.55
LIME1Q9H400 MIR124-2-201ENST00000385081 109 ntBASIC-0.87□□□□□ -2.55
LIME1Q9H400 MIR3675-201ENST00000583661 73 ntBASIC-0.87□□□□□ -2.55
LIME1Q9H400 RNU6-645P-201ENST00000364649 106 ntBASIC-0.88□□□□□ -2.55
LIME1Q9H400 SNORD18.2-201ENST00000459604 70 ntBASIC-0.88□□□□□ -2.55
LIME1Q9H400 RNU6-518P-201ENST00000516056 96 ntBASIC-0.88□□□□□ -2.55
LIME1Q9H400 U2.7-201ENST00000619197 100 ntBASIC-0.88□□□□□ -2.55
LIME1Q9H400 MIR1297-201ENST00000637311 77 ntBASIC-0.88□□□□□ -2.55
LIME1Q9H400 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.89□□□□□ -2.55
LIME1Q9H400 RNU6-807P-201ENST00000516805 107 ntBASIC-0.89□□□□□ -2.55
LIME1Q9H400 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.89□□□□□ -2.55
LIME1Q9H400 RNU6-315P-201ENST00000362666 107 ntBASIC-0.9□□□□□ -2.55
LIME1Q9H400 RNU6-979P-201ENST00000383896 107 ntBASIC-0.9□□□□□ -2.55
LIME1Q9H400 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.9□□□□□ -2.55
LIME1Q9H400 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.9□□□□□ -2.55
LIME1Q9H400 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.9□□□□□ -2.55
LIME1Q9H400 MIR5588-201ENST00000581890 63 ntBASIC-0.9□□□□□ -2.55
LIME1Q9H400 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.9□□□□□ -2.55
LIME1Q9H400 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.9□□□□□ -2.55
LIME1Q9H400 MIR6738-201ENST00000619620 64 ntBASIC-0.9□□□□□ -2.55
LIME1Q9H400 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.91□□□□□ -2.56
LIME1Q9H400 RNU6-10P-201ENST00000384036 107 ntBASIC-0.91□□□□□ -2.56
LIME1Q9H400 Y_RNA.426-201ENST00000384068 113 ntBASIC-0.91□□□□□ -2.56
LIME1Q9H400 MIR147A-201ENST00000385079 72 ntBASIC-0.92□□□□□ -2.56
LIME1Q9H400 RNU6-604P-201ENST00000390917 100 ntBASIC-0.92□□□□□ -2.56
LIME1Q9H400 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.92□□□□□ -2.56
LIME1Q9H400 RNU6-924P-201ENST00000362926 108 ntBASIC-0.93□□□□□ -2.56
LIME1Q9H400 SNORD114-25-201ENST00000363742 72 ntBASIC-0.93□□□□□ -2.56
LIME1Q9H400 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.93□□□□□ -2.56
LIME1Q9H400 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.93□□□□□ -2.56
LIME1Q9H400 U4.2-201ENST00000618561 85 ntBASIC-0.93□□□□□ -2.56
LIME1Q9H400 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.94□□□□□ -2.56
LIME1Q9H400 RNY1P1-201ENST00000364372 112 ntBASIC-0.94□□□□□ -2.56
LIME1Q9H400 AL500527.2-201ENST00000454105 95 ntBASIC-0.94□□□□□ -2.56
LIME1Q9H400 RNU7-171P-201ENST00000459581 62 ntBASIC-0.94□□□□□ -2.56
LIME1Q9H400 IGLL4P-201ENST00000614590 133 ntBASIC-0.94□□□□□ -2.56
LIME1Q9H400 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.95□□□□□ -2.56
LIME1Q9H400 SNORD83B-201ENST00000386745 93 ntBASIC-0.95□□□□□ -2.56
LIME1Q9H400 RNU6-380P-201ENST00000410207 107 ntBASIC-0.95□□□□□ -2.56
LIME1Q9H400 SCARNA17-201ENST00000516183 144 ntBASIC-0.95□□□□□ -2.56
LIME1Q9H400 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.95□□□□□ -2.56
LIME1Q9H400 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.95□□□□□ -2.56
LIME1Q9H400 SNORD114-17-201ENST00000364699 75 ntBASIC-0.96□□□□□ -2.56
LIME1Q9H400 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.97□□□□□ -2.56
LIME1Q9H400 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.97□□□□□ -2.56
LIME1Q9H400 RNU6-431P-201ENST00000383874 107 ntBASIC-0.97□□□□□ -2.56
LIME1Q9H400 MIR548AG1-201ENST00000579932 66 ntBASIC-0.97□□□□□ -2.56
LIME1Q9H400 MIR1207-201ENST00000408249 87 ntBASIC-0.98□□□□□ -2.57
LIME1Q9H400 RNY4P30-201ENST00000410216 95 ntBASIC-0.98□□□□□ -2.57
LIME1Q9H400 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.98□□□□□ -2.57
LIME1Q9H400 RNU6-982P-201ENST00000516216 102 ntBASIC-0.98□□□□□ -2.57
LIME1Q9H400 RNU7-174P-201ENST00000516248 59 ntBASIC-0.98□□□□□ -2.57
LIME1Q9H400 MIR4484-201ENST00000582855 83 ntBASIC-0.98□□□□□ -2.57
LIME1Q9H400 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.99□□□□□ -2.57
LIME1Q9H400 SNORD45.1-201ENST00000363181 77 ntBASIC-0.99□□□□□ -2.57
LIME1Q9H400 SNORA26.4-201ENST00000391188 123 ntBASIC-0.99□□□□□ -2.57
LIME1Q9H400 SNORD115-22-201ENST00000364456 82 ntBASIC-1□□□□□ -2.57
LIME1Q9H400 SNORD64-201ENST00000386683 67 ntBASIC-1□□□□□ -2.57
LIME1Q9H400 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1□□□□□ -2.57
LIME1Q9H400 RNU6-1089P-201ENST00000516473 104 ntBASIC-1□□□□□ -2.57
LIME1Q9H400 MIR4712-201ENST00000583750 82 ntBASIC-1□□□□□ -2.57
LIME1Q9H400 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.01□□□□□ -2.57
LIME1Q9H400 RNU6-246P-201ENST00000384702 107 ntBASIC-1.01□□□□□ -2.57
LIME1Q9H400 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.01□□□□□ -2.57
LIME1Q9H400 MIR8053-201ENST00000613344 75 ntBASIC-1.01□□□□□ -2.57
LIME1Q9H400 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.02□□□□□ -2.57
LIME1Q9H400 SNORD115-33-201ENST00000363723 82 ntBASIC-1.02□□□□□ -2.57
LIME1Q9H400 MIR4499-201ENST00000584834 69 ntBASIC-1.02□□□□□ -2.57
LIME1Q9H400 MIR4324-201ENST00000584846 72 ntBASIC-1.02□□□□□ -2.57
LIME1Q9H400 RNU6-294P-201ENST00000364999 102 ntBASIC-1.03□□□□□ -2.57
LIME1Q9H400 MIR450A2-201ENST00000385022 100 ntBASIC-1.03□□□□□ -2.57
LIME1Q9H400 uc_338.19-201ENST00000616808 99 ntBASIC-1.03□□□□□ -2.57
LIME1Q9H400 MIR1245B-201ENST00000636115 69 ntBASIC-1.03□□□□□ -2.57
LIME1Q9H400 MIR382-201ENST00000637119 76 ntBASIC-1.03□□□□□ -2.57
LIME1Q9H400 SCARNA18B-201ENST00000458806 135 ntBASIC-1.04□□□□□ -2.58
LIME1Q9H400 MIR378F-201ENST00000578143 78 ntBASIC-1.04□□□□□ -2.58
LIME1Q9H400 SNORD114-3-201ENST00000364969 75 ntBASIC-1.05□□□□□ -2.58
LIME1Q9H400 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.05□□□□□ -2.58
LIME1Q9H400 MIR548C-201ENST00000384815 97 ntBASIC-1.05□□□□□ -2.58
LIME1Q9H400 RNU6-698P-201ENST00000363523 107 ntBASIC-1.06□□□□□ -2.58
LIME1Q9H400 RNU6-34P-201ENST00000364874 107 ntBASIC-1.06□□□□□ -2.58
LIME1Q9H400 MTND4LP1-201ENST00000446263 157 ntBASIC-1.06□□□□□ -2.58
LIME1Q9H400 RNU6-732P-201ENST00000516033 103 ntBASIC-1.06□□□□□ -2.58
LIME1Q9H400 SNORD63.1-201ENST00000516178 80 ntBASIC-1.06□□□□□ -2.58
LIME1Q9H400 MIR494-201ENST00000349529 81 ntBASIC-1.07□□□□□ -2.58
LIME1Q9H400 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.07□□□□□ -2.58
LIME1Q9H400 RNU6-587P-201ENST00000391282 106 ntBASIC-1.07□□□□□ -2.58
LIME1Q9H400 MIR4666B-201ENST00000578142 81 ntBASIC-1.07□□□□□ -2.58
LIME1Q9H400 MIR5582-201ENST00000579697 68 ntBASIC-1.07□□□□□ -2.58
LIME1Q9H400 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.08□□□□□ -2.58
LIME1Q9H400 SNORD113.1-201ENST00000363280 73 ntBASIC-1.08□□□□□ -2.58
LIME1Q9H400 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.08□□□□□ -2.58
LIME1Q9H400 RNU6-242P-201ENST00000384359 107 ntBASIC-1.08□□□□□ -2.58
LIME1Q9H400 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.08□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 227.9 ms