Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.38□□□□□ -2.47
UPF3AQ9H1J1 AL353803.5-201ENST00000599815 141 ntBASIC-0.38□□□□□ -2.47
UPF3AQ9H1J1 MIR6854-201ENST00000614935 69 ntBASIC-0.38□□□□□ -2.47
UPF3AQ9H1J1 U2.7-201ENST00000619197 100 ntBASIC-0.38□□□□□ -2.47
UPF3AQ9H1J1 snoR1.1-201ENST00000628177 80 ntBASIC-0.38□□□□□ -2.47
UPF3AQ9H1J1 AC093726.3-201ENST00000637588 150 ntBASIC-0.38□□□□□ -2.47
UPF3AQ9H1J1 MIR519A2-201ENST00000384990 87 ntBASIC-0.39□□□□□ -2.47
UPF3AQ9H1J1 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.39□□□□□ -2.47
UPF3AQ9H1J1 RNU6-380P-201ENST00000410207 107 ntBASIC-0.39□□□□□ -2.47
UPF3AQ9H1J1 RNU6-1124P-201ENST00000384169 107 ntBASIC-0.4□□□□□ -2.47
UPF3AQ9H1J1 MIR3134-201ENST00000579433 74 ntBASIC-0.4□□□□□ -2.47
UPF3AQ9H1J1 MIR548AG1-201ENST00000579932 66 ntBASIC-0.4□□□□□ -2.47
UPF3AQ9H1J1 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.41□□□□□ -2.48
UPF3AQ9H1J1 MIR196A2-201ENST00000385189 110 ntBASIC-0.41□□□□□ -2.48
UPF3AQ9H1J1 MIR1302-4-201ENST00000408701 150 ntBASIC-0.41□□□□□ -2.48
UPF3AQ9H1J1 SNORD126-201ENST00000459475 77 ntBASIC-0.41□□□□□ -2.48
UPF3AQ9H1J1 MIR6888-201ENST00000621977 67 ntBASIC-0.41□□□□□ -2.48
UPF3AQ9H1J1 MIR3202-2-201ENST00000635980 79 ntBASIC-0.41□□□□□ -2.48
UPF3AQ9H1J1 SNORD14C-201ENST00000365382 88 ntBASIC-0.42□□□□□ -2.48
UPF3AQ9H1J1 SNORD45A-201ENST00000384512 84 ntBASIC-0.42□□□□□ -2.48
UPF3AQ9H1J1 MIR1255A-201ENST00000408338 113 ntBASIC-0.42□□□□□ -2.48
UPF3AQ9H1J1 RNU6-518P-201ENST00000516056 96 ntBASIC-0.42□□□□□ -2.48
UPF3AQ9H1J1 RNA5SP470-201ENST00000516463 106 ntBASIC-0.42□□□□□ -2.48
UPF3AQ9H1J1 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.42□□□□□ -2.48
UPF3AQ9H1J1 SNORD113.1-201ENST00000363280 73 ntBASIC-0.43□□□□□ -2.48
UPF3AQ9H1J1 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.44□□□□□ -2.48
UPF3AQ9H1J1 RNU7-154P-201ENST00000516194 62 ntBASIC-0.44□□□□□ -2.48
UPF3AQ9H1J1 RNU6-70P-201ENST00000516438 60 ntBASIC-0.44□□□□□ -2.48
UPF3AQ9H1J1 AL445584.3-201ENST00000617173 78 ntBASIC-0.44□□□□□ -2.48
UPF3AQ9H1J1 MIR409-201ENST00000362237 79 ntBASIC-0.45□□□□□ -2.48
UPF3AQ9H1J1 RNA5SP331-201ENST00000364986 107 ntBASIC-0.45□□□□□ -2.48
UPF3AQ9H1J1 MIR8053-201ENST00000613344 75 ntBASIC-0.45□□□□□ -2.48
UPF3AQ9H1J1 SNORD115-31-201ENST00000365318 82 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 SNORA62.4-201ENST00000365504 151 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 SNORD78.1-201ENST00000390866 65 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 RNU6-279P-201ENST00000391297 101 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 AL021921.1-201ENST00000442774 93 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 RNU6-857P-201ENST00000515893 110 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 RNU7-174P-201ENST00000516248 59 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 RNU6-687P-201ENST00000516443 89 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 MIR548AZ-201ENST00000616567 95 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.46□□□□□ -2.48
UPF3AQ9H1J1 SNORA32.3-201ENST00000384772 121 ntBASIC-0.47□□□□□ -2.48
UPF3AQ9H1J1 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.47□□□□□ -2.48
UPF3AQ9H1J1 RNA5SP225-201ENST00000410874 135 ntBASIC-0.47□□□□□ -2.48
UPF3AQ9H1J1 RNU6-284P-201ENST00000411105 106 ntBASIC-0.47□□□□□ -2.48
UPF3AQ9H1J1 SNORD22.1-201ENST00000516331 125 ntBASIC-0.47□□□□□ -2.48
UPF3AQ9H1J1 SNORD116-24-201ENST00000384549 92 ntBASIC-0.48□□□□□ -2.49
UPF3AQ9H1J1 MIR518B-201ENST00000385127 83 ntBASIC-0.48□□□□□ -2.49
UPF3AQ9H1J1 RNU6-587P-201ENST00000391282 106 ntBASIC-0.48□□□□□ -2.49
UPF3AQ9H1J1 RNU6-721P-201ENST00000410155 105 ntBASIC-0.48□□□□□ -2.49
UPF3AQ9H1J1 MIR548C-201ENST00000384815 97 ntBASIC-0.49□□□□□ -2.49
UPF3AQ9H1J1 MIR124-2-201ENST00000385081 109 ntBASIC-0.49□□□□□ -2.49
UPF3AQ9H1J1 MIR204-201ENST00000385200 110 ntBASIC-0.49□□□□□ -2.49
UPF3AQ9H1J1 MIR4436A-201ENST00000585278 85 ntBASIC-0.49□□□□□ -2.49
UPF3AQ9H1J1 RNU6-523P-201ENST00000516304 54 ntBASIC-0.5□□□□□ -2.49
UPF3AQ9H1J1 RNU6-1015P-201ENST00000517121 99 ntBASIC-0.5□□□□□ -2.49
UPF3AQ9H1J1 MIR154-201ENST00000385243 84 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 SNORD75.1-201ENST00000408373 60 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 MIR3179-1-201ENST00000578940 84 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 MIR3179-2-201ENST00000579107 84 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 MIR3179-3-201ENST00000579566 84 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 U7.4-201ENST00000614961 63 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 MIR3179-4-201ENST00000617599 84 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 U4.4-201ENST00000620626 117 ntBASIC-0.51□□□□□ -2.49
UPF3AQ9H1J1 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.52□□□□□ -2.49
UPF3AQ9H1J1 SNORD74.6-201ENST00000364796 70 ntBASIC-0.52□□□□□ -2.49
UPF3AQ9H1J1 RNU6-24P-201ENST00000384440 107 ntBASIC-0.52□□□□□ -2.49
UPF3AQ9H1J1 SNORD114-14-201ENST00000362723 75 ntBASIC-0.53□□□□□ -2.49
UPF3AQ9H1J1 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.53□□□□□ -2.49
UPF3AQ9H1J1 MIR517B-201ENST00000385102 67 ntBASIC-0.53□□□□□ -2.49
UPF3AQ9H1J1 SNORA3B-201ENST00000391305 131 ntBASIC-0.53□□□□□ -2.49
UPF3AQ9H1J1 RNA5SP266-201ENST00000410273 108 ntBASIC-0.53□□□□□ -2.49
UPF3AQ9H1J1 MTND4LP1-201ENST00000446263 157 ntBASIC-0.53□□□□□ -2.49
UPF3AQ9H1J1 SNORA13-201ENST00000458790 133 ntBASIC-0.53□□□□□ -2.49
UPF3AQ9H1J1 RNU6-668P-201ENST00000364180 107 ntBASIC-0.54□□□□□ -2.5
UPF3AQ9H1J1 RNU6-411P-201ENST00000384451 107 ntBASIC-0.54□□□□□ -2.5
UPF3AQ9H1J1 RNU6-246P-201ENST00000384702 107 ntBASIC-0.54□□□□□ -2.5
UPF3AQ9H1J1 RNU4-63P-201ENST00000411313 118 ntBASIC-0.54□□□□□ -2.5
UPF3AQ9H1J1 SNORD57-201ENST00000448188 72 ntBASIC-0.54□□□□□ -2.5
UPF3AQ9H1J1 MIR548AX-201ENST00000580117 73 ntBASIC-0.54□□□□□ -2.5
UPF3AQ9H1J1 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.55□□□□□ -2.5
UPF3AQ9H1J1 RNU6-698P-201ENST00000363523 107 ntBASIC-0.55□□□□□ -2.5
UPF3AQ9H1J1 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.55□□□□□ -2.5
UPF3AQ9H1J1 RNU6-34P-201ENST00000364874 107 ntBASIC-0.55□□□□□ -2.5
UPF3AQ9H1J1 AP000533.3-201ENST00000447704 118 ntBASIC-0.55□□□□□ -2.5
UPF3AQ9H1J1 MIR889-201ENST00000401280 79 ntBASIC-0.56□□□□□ -2.5
UPF3AQ9H1J1 MIR548V-201ENST00000584165 80 ntBASIC-0.56□□□□□ -2.5
UPF3AQ9H1J1 MIR630-201ENST00000384957 97 ntBASIC-0.57□□□□□ -2.5
UPF3AQ9H1J1 SNORD18.2-201ENST00000459604 70 ntBASIC-0.57□□□□□ -2.5
UPF3AQ9H1J1 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.58□□□□□ -2.5
UPF3AQ9H1J1 RNA5SP215-201ENST00000363440 122 ntBASIC-0.58□□□□□ -2.5
UPF3AQ9H1J1 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.58□□□□□ -2.5
UPF3AQ9H1J1 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.58□□□□□ -2.5
UPF3AQ9H1J1 RNU6-540P-201ENST00000384622 101 ntBASIC-0.58□□□□□ -2.5
UPF3AQ9H1J1 RNU6-634P-201ENST00000459134 106 ntBASIC-0.58□□□□□ -2.5
UPF3AQ9H1J1 AC021146.6-201ENST00000514659 117 ntBASIC-0.58□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 191.9 ms