Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 SNORD44.1-201ENST00000363202 61 ntBASIC0.45□□□□□ -2.34
USP43Q70EL4 RNU6-838P-201ENST00000363399 108 ntBASIC0.45□□□□□ -2.34
USP43Q70EL4 RNU6-945P-201ENST00000383947 107 ntBASIC0.45□□□□□ -2.34
USP43Q70EL4 MIR106A-201ENST00000384870 81 ntBASIC0.45□□□□□ -2.34
USP43Q70EL4 AL353803.5-201ENST00000599815 141 ntBASIC0.45□□□□□ -2.34
USP43Q70EL4 U7.6-201ENST00000610841 64 ntBASIC0.45□□□□□ -2.34
USP43Q70EL4 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC0.45□□□□□ -2.34
USP43Q70EL4 U2.18-201ENST00000622185 84 ntBASIC0.45□□□□□ -2.34
USP43Q70EL4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.44□□□□□ -2.34
USP43Q70EL4 SNORA50A-201ENST00000384225 134 ntBASIC0.44□□□□□ -2.34
USP43Q70EL4 SNORD71-201ENST00000411292 86 ntBASIC0.44□□□□□ -2.34
USP43Q70EL4 AC084368.1-201ENST00000620935 65 ntBASIC0.44□□□□□ -2.34
USP43Q70EL4 MIR499B-201ENST00000636498 73 ntBASIC0.44□□□□□ -2.34
USP43Q70EL4 RNA5SP257-201ENST00000363023 116 ntBASIC0.43□□□□□ -2.34
USP43Q70EL4 RNA5SP128-201ENST00000365305 116 ntBASIC0.43□□□□□ -2.34
USP43Q70EL4 MIR125B1-201ENST00000385236 88 ntBASIC0.43□□□□□ -2.34
USP43Q70EL4 MIR760-201ENST00000390220 80 ntBASIC0.43□□□□□ -2.34
USP43Q70EL4 RNU7-151P-201ENST00000516930 53 ntBASIC0.43□□□□□ -2.34
USP43Q70EL4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
USP43Q70EL4 Y_RNA.69-201ENST00000362885 109 ntBASIC0.42□□□□□ -2.34
USP43Q70EL4 RNA5SP499-201ENST00000363982 119 ntBASIC0.42□□□□□ -2.34
USP43Q70EL4 MIR579-201ENST00000385221 98 ntBASIC0.42□□□□□ -2.34
USP43Q70EL4 AC114737.2-201ENST00000421583 173 ntBASIC0.42□□□□□ -2.34
USP43Q70EL4 RNU6-1262P-201ENST00000516217 96 ntBASIC0.42□□□□□ -2.34
USP43Q70EL4 MIR6888-201ENST00000621977 67 ntBASIC0.42□□□□□ -2.34
USP43Q70EL4 Y_RNA.178-201ENST00000363832 102 ntBASIC0.41□□□□□ -2.34
USP43Q70EL4 VTRNA1-3-201ENST00000365645 89 ntBASIC0.41□□□□□ -2.34
USP43Q70EL4 MIR545-201ENST00000385085 106 ntBASIC0.41□□□□□ -2.34
USP43Q70EL4 MIR1197-201ENST00000408818 88 ntBASIC0.41□□□□□ -2.34
USP43Q70EL4 MIR548H2-201ENST00000408874 88 ntBASIC0.41□□□□□ -2.34
USP43Q70EL4 RNU7-55P-201ENST00000459426 62 ntBASIC0.4□□□□□ -2.35
USP43Q70EL4 RNU6-1206P-201ENST00000516339 103 ntBASIC0.4□□□□□ -2.35
USP43Q70EL4 SNORA62.5-201ENST00000516634 120 ntBASIC0.4□□□□□ -2.35
USP43Q70EL4 RNU7-160P-201ENST00000516660 62 ntBASIC0.4□□□□□ -2.35
USP43Q70EL4 MIR103A1-201ENST00000362165 78 ntBASIC0.39□□□□□ -2.35
USP43Q70EL4 RNU6-974P-201ENST00000384099 108 ntBASIC0.39□□□□□ -2.35
USP43Q70EL4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.39□□□□□ -2.35
USP43Q70EL4 SCARNA11.2-201ENST00000517183 154 ntBASIC0.39□□□□□ -2.35
USP43Q70EL4 AC108676.2-201ENST00000605225 163 ntBASIC0.39□□□□□ -2.35
USP43Q70EL4 AL445584.3-201ENST00000617173 78 ntBASIC0.39□□□□□ -2.35
USP43Q70EL4 MTRNR2L9-201ENST00000622562 75 ntBASIC0.39□□□□□ -2.35
USP43Q70EL4 RNU6-1267P-201ENST00000410747 107 ntBASIC0.38□□□□□ -2.35
USP43Q70EL4 SNORD57-201ENST00000448188 72 ntBASIC0.38□□□□□ -2.35
USP43Q70EL4 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
USP43Q70EL4 U7.5-201ENST00000517224 61 ntBASIC0.38□□□□□ -2.35
USP43Q70EL4 AP000676.1-201ENST00000533307 52 ntBASIC0.38□□□□□ -2.35
USP43Q70EL4 RNU6-986P-201ENST00000363133 102 ntBASIC0.37□□□□□ -2.35
USP43Q70EL4 RNA5SP62-201ENST00000363457 110 ntBASIC0.37□□□□□ -2.35
USP43Q70EL4 RNU6-696P-201ENST00000390834 107 ntBASIC0.37□□□□□ -2.35
USP43Q70EL4 RNU6-127P-201ENST00000390897 107 ntBASIC0.37□□□□□ -2.35
USP43Q70EL4 RNU6-1174P-201ENST00000517278 101 ntBASIC0.37□□□□□ -2.35
USP43Q70EL4 MIR4432-201ENST00000581823 84 ntBASIC0.37□□□□□ -2.35
USP43Q70EL4 MIR429-201ENST00000362106 83 ntBASIC0.36□□□□□ -2.35
USP43Q70EL4 MIRLET7D-201ENST00000362263 87 ntBASIC0.36□□□□□ -2.35
USP43Q70EL4 MIR548AA1-201ENST00000384971 97 ntBASIC0.36□□□□□ -2.35
USP43Q70EL4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC0.36□□□□□ -2.35
USP43Q70EL4 RNU6-815P-201ENST00000384080 113 ntBASIC0.35□□□□□ -2.35
USP43Q70EL4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.35□□□□□ -2.35
USP43Q70EL4 AC096531.1-201ENST00000419107 107 ntBASIC0.35□□□□□ -2.35
USP43Q70EL4 AL451105.1-201ENST00000450005 189 ntBASIC0.35□□□□□ -2.35
USP43Q70EL4 MIR6507-201ENST00000613630 70 ntBASIC0.35□□□□□ -2.35
USP43Q70EL4 MIR8068-201ENST00000618032 68 ntBASIC0.35□□□□□ -2.35
USP43Q70EL4 RNU6-247P-201ENST00000362636 107 ntBASIC0.34□□□□□ -2.36
USP43Q70EL4 Y_RNA.139-201ENST00000363464 102 ntBASIC0.34□□□□□ -2.36
USP43Q70EL4 RNU6-973P-201ENST00000364690 107 ntBASIC0.34□□□□□ -2.36
USP43Q70EL4 RNU7-88P-201ENST00000458752 63 ntBASIC0.34□□□□□ -2.36
USP43Q70EL4 MIR548AL-201ENST00000578416 97 ntBASIC0.34□□□□□ -2.36
USP43Q70EL4 MIR4514-201ENST00000581410 57 ntBASIC0.34□□□□□ -2.36
USP43Q70EL4 AL391099.1-201ENST00000624635 187 ntBASIC0.34□□□□□ -2.36
USP43Q70EL4 RNA5SP98-201ENST00000363158 137 ntBASIC0.33□□□□□ -2.36
USP43Q70EL4 RNU6-900P-201ENST00000384498 102 ntBASIC0.33□□□□□ -2.36
USP43Q70EL4 RNU6-1250P-201ENST00000391218 107 ntBASIC0.33□□□□□ -2.36
USP43Q70EL4 RNU6-180P-201ENST00000516697 61 ntBASIC0.33□□□□□ -2.36
USP43Q70EL4 AC023932.2-201ENST00000603176 175 ntBASIC0.33□□□□□ -2.36
USP43Q70EL4 RNU6-828P-201ENST00000364876 107 ntBASIC0.32□□□□□ -2.36
USP43Q70EL4 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
USP43Q70EL4 RNU7-129P-201ENST00000516128 62 ntBASIC0.32□□□□□ -2.36
USP43Q70EL4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.32□□□□□ -2.36
USP43Q70EL4 MIR5704-201ENST00000584029 77 ntBASIC0.32□□□□□ -2.36
USP43Q70EL4 uc_338.36-201ENST00000622331 158 ntBASIC0.32□□□□□ -2.36
USP43Q70EL4 AC090625.1-201ENST00000357130 210 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 MIR655-201ENST00000362159 97 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 SNORA42.1-201ENST00000363515 137 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 MIR29B1-201ENST00000385015 81 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 MIR329-2-201ENST00000385029 84 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 RNU6-258P-201ENST00000390884 101 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 SNORD19-201ENST00000391191 68 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 RNA5SP63-201ENST00000391225 112 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 MIR548H4-201ENST00000408689 111 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 AC114755.3-201ENST00000481111 251 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 MIR3170-201ENST00000582699 77 ntBASIC0.31□□□□□ -2.36
USP43Q70EL4 RNU6-742P-201ENST00000365289 107 ntBASIC0.3□□□□□ -2.36
USP43Q70EL4 SNORA62.4-201ENST00000365504 151 ntBASIC0.3□□□□□ -2.36
USP43Q70EL4 SNORD56B-201ENST00000384713 71 ntBASIC0.3□□□□□ -2.36
USP43Q70EL4 MIR520D-201ENST00000385002 87 ntBASIC0.3□□□□□ -2.36
USP43Q70EL4 Y_RNA.613-201ENST00000410726 97 ntBASIC0.3□□□□□ -2.36
USP43Q70EL4 AC069113.3-201ENST00000521019 150 ntBASIC0.3□□□□□ -2.36
USP43Q70EL4 MIR643-201ENST00000385267 97 ntBASIC0.29□□□□□ -2.36
USP43Q70EL4 CR383656.4-201ENST00000546909 122 ntBASIC0.29□□□□□ -2.36
USP43Q70EL4 RNU6-455P-201ENST00000384681 107 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 191 ms