Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR4520-1-201ENST00000582609 70 ntBASIC-1.12□□□□□ -2.59
CDX1P47902 AL603908.1-201ENST00000406098 201 ntBASIC-1.13□□□□□ -2.59
CDX1P47902 MIR4770-201ENST00000579149 58 ntBASIC-1.13□□□□□ -2.59
CDX1P47902 MIR6874-201ENST00000635894 71 ntBASIC-1.13□□□□□ -2.59
CDX1P47902 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.14□□□□□ -2.59
CDX1P47902 MIR507-201ENST00000385234 94 ntBASIC-1.14□□□□□ -2.59
CDX1P47902 AL035461.1-201ENST00000421490 332 ntBASIC-1.14□□□□□ -2.59
CDX1P47902 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.14□□□□□ -2.59
CDX1P47902 MIR6502-201ENST00000617296 76 ntBASIC-1.14□□□□□ -2.59
CDX1P47902 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.14□□□□□ -2.59
CDX1P47902 RNU6-164P-201ENST00000364604 103 ntBASIC-1.15□□□□□ -2.59
CDX1P47902 AL353691.2-201ENST00000443795 59 ntBASIC-1.15□□□□□ -2.59
CDX1P47902 MIR4723-201ENST00000585070 81 ntBASIC-1.15□□□□□ -2.59
CDX1P47902 RNU6-755P-201ENST00000364400 103 ntBASIC-1.16□□□□□ -2.6
CDX1P47902 RNU6-32P-201ENST00000383948 107 ntBASIC-1.16□□□□□ -2.6
CDX1P47902 RNU6-13P-201ENST00000384248 107 ntBASIC-1.16□□□□□ -2.6
CDX1P47902 RNU6-12P-201ENST00000384604 107 ntBASIC-1.16□□□□□ -2.6
CDX1P47902 RNU6-41P-201ENST00000384741 107 ntBASIC-1.16□□□□□ -2.6
CDX1P47902 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.16□□□□□ -2.6
CDX1P47902 RNU6-624P-201ENST00000363411 107 ntBASIC-1.17□□□□□ -2.6
CDX1P47902 RNU6-402P-201ENST00000410678 103 ntBASIC-1.17□□□□□ -2.6
CDX1P47902 RNU6-789P-201ENST00000517105 102 ntBASIC-1.17□□□□□ -2.6
CDX1P47902 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.17□□□□□ -2.6
CDX1P47902 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.18□□□□□ -2.6
CDX1P47902 RNA5SP461-201ENST00000516451 104 ntBASIC-1.18□□□□□ -2.6
CDX1P47902 AP002795.1-201ENST00000534879 84 ntBASIC-1.18□□□□□ -2.6
CDX1P47902 RNU6-226P-201ENST00000363778 107 ntBASIC-1.19□□□□□ -2.6
CDX1P47902 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.19□□□□□ -2.6
CDX1P47902 RNU6-732P-201ENST00000516033 103 ntBASIC-1.19□□□□□ -2.6
CDX1P47902 RNU6-518P-201ENST00000516056 96 ntBASIC-1.19□□□□□ -2.6
CDX1P47902 RNU7-154P-201ENST00000516194 62 ntBASIC-1.19□□□□□ -2.6
CDX1P47902 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.19□□□□□ -2.6
CDX1P47902 SNORA63.4-201ENST00000362763 126 ntBASIC-1.2□□□□□ -2.6
CDX1P47902 RNU6-219P-201ENST00000364728 107 ntBASIC-1.2□□□□□ -2.6
CDX1P47902 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.2□□□□□ -2.6
CDX1P47902 MIR519A2-201ENST00000384990 87 ntBASIC-1.2□□□□□ -2.6
CDX1P47902 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.2□□□□□ -2.6
CDX1P47902 RNU6-267P-201ENST00000516714 103 ntBASIC-1.2□□□□□ -2.6
CDX1P47902 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.2□□□□□ -2.6
CDX1P47902 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.2□□□□□ -2.6
CDX1P47902 MIR548BB-201ENST00000626714 66 ntBASIC-1.2□□□□□ -2.6
CDX1P47902 MIR1285-2-201ENST00000408311 88 ntBASIC-1.21□□□□□ -2.6
CDX1P47902 AL021921.1-201ENST00000442774 93 ntBASIC-1.21□□□□□ -2.6
CDX1P47902 MIR4490-201ENST00000582647 84 ntBASIC-1.21□□□□□ -2.6
CDX1P47902 U4.2-201ENST00000618561 85 ntBASIC-1.21□□□□□ -2.6
CDX1P47902 MIR5683-201ENST00000636514 76 ntBASIC-1.21□□□□□ -2.6
CDX1P47902 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.21□□□□□ -2.6
CDX1P47902 MIR365A-201ENST00000362260 87 ntBASIC-1.22□□□□□ -2.6
CDX1P47902 SNORD20-201ENST00000384550 80 ntBASIC-1.22□□□□□ -2.6
CDX1P47902 SNORD19-201ENST00000391191 68 ntBASIC-1.22□□□□□ -2.6
CDX1P47902 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.22□□□□□ -2.6
CDX1P47902 RPL35AP4-201ENST00000412007 102 ntBASIC-1.22□□□□□ -2.6
CDX1P47902 RNU6-919P-201ENST00000516731 104 ntBASIC-1.22□□□□□ -2.6
CDX1P47902 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.23□□□□□ -2.61
CDX1P47902 AC090616.4-201ENST00000448026 115 ntBASIC-1.23□□□□□ -2.61
CDX1P47902 RNU6-168P-201ENST00000516189 101 ntBASIC-1.23□□□□□ -2.61
CDX1P47902 RNU6-147P-201ENST00000383983 107 ntBASIC-1.24□□□□□ -2.61
CDX1P47902 RNA5SP86-201ENST00000390869 98 ntBASIC-1.24□□□□□ -2.61
CDX1P47902 RNU7-88P-201ENST00000458752 63 ntBASIC-1.24□□□□□ -2.61
CDX1P47902 RNA5SP180-201ENST00000516181 101 ntBASIC-1.24□□□□□ -2.61
CDX1P47902 RNU6-557P-201ENST00000516842 110 ntBASIC-1.24□□□□□ -2.61
CDX1P47902 U7.5-201ENST00000517224 61 ntBASIC-1.24□□□□□ -2.61
CDX1P47902 RNU6-215P-201ENST00000365169 102 ntBASIC-1.25□□□□□ -2.61
CDX1P47902 MIR548H1-201ENST00000408610 102 ntBASIC-1.25□□□□□ -2.61
CDX1P47902 RNU6-656P-201ENST00000516785 107 ntBASIC-1.25□□□□□ -2.61
CDX1P47902 RNU6-303P-201ENST00000517091 106 ntBASIC-1.25□□□□□ -2.61
CDX1P47902 MIR548AG1-201ENST00000579932 66 ntBASIC-1.25□□□□□ -2.61
CDX1P47902 MIR4441-201ENST00000582623 100 ntBASIC-1.25□□□□□ -2.61
CDX1P47902 MIR3675-201ENST00000583661 73 ntBASIC-1.25□□□□□ -2.61
CDX1P47902 RNU6-686P-201ENST00000364839 107 ntBASIC-1.26□□□□□ -2.61
CDX1P47902 SNORD114-3-201ENST00000364969 75 ntBASIC-1.26□□□□□ -2.61
CDX1P47902 MIR488-201ENST00000365739 83 ntBASIC-1.26□□□□□ -2.61
CDX1P47902 RNU6-246P-201ENST00000384702 107 ntBASIC-1.26□□□□□ -2.61
CDX1P47902 MIR548C-201ENST00000384815 97 ntBASIC-1.27□□□□□ -2.61
CDX1P47902 RNU6-640P-201ENST00000363693 105 ntBASIC-1.28□□□□□ -2.61
CDX1P47902 RNU6-645P-201ENST00000364649 106 ntBASIC-1.28□□□□□ -2.61
CDX1P47902 RNU6-400P-201ENST00000391173 106 ntBASIC-1.28□□□□□ -2.61
CDX1P47902 AC018880.2-201ENST00000414265 201 ntBASIC-1.28□□□□□ -2.61
CDX1P47902 MIR548AI-201ENST00000579940 88 ntBASIC-1.28□□□□□ -2.61
CDX1P47902 RNU6-129P-201ENST00000391022 107 ntBASIC-1.29□□□□□ -2.62
CDX1P47902 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.29□□□□□ -2.62
CDX1P47902 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.3□□□□□ -2.62
CDX1P47902 RNU6-497P-201ENST00000365316 104 ntBASIC-1.3□□□□□ -2.62
CDX1P47902 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.3□□□□□ -2.62
CDX1P47902 RNU6-844P-201ENST00000517175 102 ntBASIC-1.3□□□□□ -2.62
CDX1P47902 RNU6-79P-201ENST00000362511 107 ntBASIC-1.31□□□□□ -2.62
CDX1P47902 RNU6-330P-201ENST00000363015 107 ntBASIC-1.31□□□□□ -2.62
CDX1P47902 MIR548Q-201ENST00000408404 100 ntBASIC-1.31□□□□□ -2.62
CDX1P47902 RNU6-380P-201ENST00000410207 107 ntBASIC-1.31□□□□□ -2.62
CDX1P47902 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.31□□□□□ -2.62
CDX1P47902 MIR1246-201ENST00000636535 73 ntBASIC-1.31□□□□□ -2.62
CDX1P47902 AC006160.2-201ENST00000637708 154 ntBASIC-1.31□□□□□ -2.62
CDX1P47902 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.32□□□□□ -2.62
CDX1P47902 SNORA8.1-201ENST00000384250 140 ntBASIC-1.32□□□□□ -2.62
CDX1P47902 MIR487B-201ENST00000385021 84 ntBASIC-1.32□□□□□ -2.62
CDX1P47902 MIR1207-201ENST00000408249 87 ntBASIC-1.32□□□□□ -2.62
CDX1P47902 RNU6-807P-201ENST00000516805 107 ntBASIC-1.32□□□□□ -2.62
CDX1P47902 U2.7-201ENST00000619197 100 ntBASIC-1.32□□□□□ -2.62
CDX1P47902 SNORD18.1-201ENST00000363807 70 ntBASIC-1.33□□□□□ -2.62
CDX1P47902 RNU6-478P-201ENST00000363904 110 ntBASIC-1.33□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms