Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.95□□□□□ -2.56
MSH2P43246 snoU13.19-201ENST00000459148 104 ntBASIC-0.95□□□□□ -2.56
MSH2P43246 RNA5SP476-201ENST00000516613 103 ntBASIC-0.95□□□□□ -2.56
MSH2P43246 MIR4484-201ENST00000582855 83 ntBASIC-0.96□□□□□ -2.56
MSH2P43246 U2.7-201ENST00000619197 100 ntBASIC-0.96□□□□□ -2.56
MSH2P43246 SNORD45.1-201ENST00000363181 77 ntBASIC-0.97□□□□□ -2.56
MSH2P43246 Y_RNA.316-201ENST00000365118 111 ntBASIC-0.97□□□□□ -2.56
MSH2P43246 RNU6-604P-201ENST00000390917 100 ntBASIC-0.97□□□□□ -2.56
MSH2P43246 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.97□□□□□ -2.56
MSH2P43246 RNU7-171P-201ENST00000459581 62 ntBASIC-0.98□□□□□ -2.57
MSH2P43246 RNU6-294P-201ENST00000364999 102 ntBASIC-0.99□□□□□ -2.57
MSH2P43246 RNU6-924P-201ENST00000362926 108 ntBASIC-1□□□□□ -2.57
MSH2P43246 MIR548AX-201ENST00000580117 73 ntBASIC-1□□□□□ -2.57
MSH2P43246 RNU6-30P-201ENST00000384561 107 ntBASIC-1.01□□□□□ -2.57
MSH2P43246 MIR450A2-201ENST00000385022 100 ntBASIC-1.01□□□□□ -2.57
MSH2P43246 MIR494-201ENST00000349529 81 ntBASIC-1.02□□□□□ -2.57
MSH2P43246 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.02□□□□□ -2.57
MSH2P43246 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.02□□□□□ -2.57
MSH2P43246 HAR1A.1-201ENST00000459583 118 ntBASIC-1.02□□□□□ -2.57
MSH2P43246 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-1.02□□□□□ -2.57
MSH2P43246 MIR5582-201ENST00000579697 68 ntBASIC-1.02□□□□□ -2.57
MSH2P43246 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.03□□□□□ -2.57
MSH2P43246 MIR548C-201ENST00000384815 97 ntBASIC-1.03□□□□□ -2.57
MSH2P43246 RNU6-982P-201ENST00000516216 102 ntBASIC-1.03□□□□□ -2.57
MSH2P43246 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.04□□□□□ -2.58
MSH2P43246 SNORD114-17-201ENST00000364699 75 ntBASIC-1.04□□□□□ -2.58
MSH2P43246 RNU6-242P-201ENST00000384359 107 ntBASIC-1.04□□□□□ -2.58
MSH2P43246 MIR1245B-201ENST00000636115 69 ntBASIC-1.05□□□□□ -2.58
MSH2P43246 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.06□□□□□ -2.58
MSH2P43246 MIR4712-201ENST00000583750 82 ntBASIC-1.06□□□□□ -2.58
MSH2P43246 SNORD115-22-201ENST00000364456 82 ntBASIC-1.07□□□□□ -2.58
MSH2P43246 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.07□□□□□ -2.58
MSH2P43246 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.07□□□□□ -2.58
MSH2P43246 MIR8053-201ENST00000613344 75 ntBASIC-1.07□□□□□ -2.58
MSH2P43246 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.08□□□□□ -2.58
MSH2P43246 RNU6-1276P-201ENST00000365372 104 ntBASIC-1.08□□□□□ -2.58
MSH2P43246 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.08□□□□□ -2.58
MSH2P43246 RNU7-174P-201ENST00000516248 59 ntBASIC-1.08□□□□□ -2.58
MSH2P43246 MIR548AG1-201ENST00000579932 66 ntBASIC-1.08□□□□□ -2.58
MSH2P43246 SNORD114-25-201ENST00000363742 72 ntBASIC-1.09□□□□□ -2.58
MSH2P43246 MIR147A-201ENST00000385079 72 ntBASIC-1.09□□□□□ -2.58
MSH2P43246 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.09□□□□□ -2.58
MSH2P43246 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.09□□□□□ -2.58
MSH2P43246 MIR196A1-201ENST00000388006 70 ntBASIC-1.1□□□□□ -2.59
MSH2P43246 MTND4LP1-201ENST00000446263 157 ntBASIC-1.1□□□□□ -2.59
MSH2P43246 RNU6-820P-201ENST00000384273 107 ntBASIC-1.11□□□□□ -2.59
MSH2P43246 SCARNA18B-201ENST00000458806 135 ntBASIC-1.11□□□□□ -2.59
MSH2P43246 MIR4666B-201ENST00000578142 81 ntBASIC-1.11□□□□□ -2.59
MSH2P43246 MIR664A-201ENST00000626086 82 ntBASIC-1.11□□□□□ -2.59
MSH2P43246 RNU6-431P-201ENST00000383874 107 ntBASIC-1.12□□□□□ -2.59
MSH2P43246 RNA5SP67-201ENST00000516422 131 ntBASIC-1.12□□□□□ -2.59
MSH2P43246 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.12□□□□□ -2.59
MSH2P43246 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.13□□□□□ -2.59
MSH2P43246 SNORD113.1-201ENST00000363280 73 ntBASIC-1.13□□□□□ -2.59
MSH2P43246 SNORD64-201ENST00000386683 67 ntBASIC-1.13□□□□□ -2.59
MSH2P43246 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.14□□□□□ -2.59
MSH2P43246 SNORA26.4-201ENST00000391188 123 ntBASIC-1.14□□□□□ -2.59
MSH2P43246 SNORD45A-201ENST00000384512 84 ntBASIC-1.15□□□□□ -2.59
MSH2P43246 RNU6-246P-201ENST00000384702 107 ntBASIC-1.15□□□□□ -2.59
MSH2P43246 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.16□□□□□ -2.6
MSH2P43246 SNORD115-33-201ENST00000363723 82 ntBASIC-1.16□□□□□ -2.6
MSH2P43246 RNU6-668P-201ENST00000364180 107 ntBASIC-1.16□□□□□ -2.6
MSH2P43246 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.16□□□□□ -2.6
MSH2P43246 AC062037.1-201ENST00000605302 128 ntBASIC-1.16□□□□□ -2.6
MSH2P43246 RNU6-698P-201ENST00000363523 107 ntBASIC-1.17□□□□□ -2.6
MSH2P43246 RNU6-34P-201ENST00000364874 107 ntBASIC-1.17□□□□□ -2.6
MSH2P43246 SNORD83B-201ENST00000386745 93 ntBASIC-1.17□□□□□ -2.6
MSH2P43246 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.17□□□□□ -2.6
MSH2P43246 RNA5SP170-201ENST00000517150 101 ntBASIC-1.17□□□□□ -2.6
MSH2P43246 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.18□□□□□ -2.6
MSH2P43246 RNA5SP215-201ENST00000363440 122 ntBASIC-1.18□□□□□ -2.6
MSH2P43246 RNU6-587P-201ENST00000391282 106 ntBASIC-1.18□□□□□ -2.6
MSH2P43246 RNU6-70P-201ENST00000516438 60 ntBASIC-1.18□□□□□ -2.6
MSH2P43246 RNU6-787P-201ENST00000384032 107 ntBASIC-1.19□□□□□ -2.6
MSH2P43246 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.19□□□□□ -2.6
MSH2P43246 SNORD63.1-201ENST00000516178 80 ntBASIC-1.19□□□□□ -2.6
MSH2P43246 SCARNA17-201ENST00000516183 144 ntBASIC-1.19□□□□□ -2.6
MSH2P43246 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.19□□□□□ -2.6
MSH2P43246 U7.5-201ENST00000517224 61 ntBASIC-1.19□□□□□ -2.6
MSH2P43246 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.2□□□□□ -2.6
MSH2P43246 RNU7-88P-201ENST00000458752 63 ntBASIC-1.2□□□□□ -2.6
MSH2P43246 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.2□□□□□ -2.6
MSH2P43246 U4.4-201ENST00000620626 117 ntBASIC-1.2□□□□□ -2.6
MSH2P43246 MIR382-201ENST00000637119 76 ntBASIC-1.2□□□□□ -2.6
MSH2P43246 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.21□□□□□ -2.6
MSH2P43246 AL500527.2-201ENST00000454105 95 ntBASIC-1.21□□□□□ -2.6
MSH2P43246 RNU6-732P-201ENST00000516033 103 ntBASIC-1.21□□□□□ -2.6
MSH2P43246 MIR548V-201ENST00000584165 80 ntBASIC-1.21□□□□□ -2.6
MSH2P43246 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.22□□□□□ -2.6
MSH2P43246 RNU6-458P-201ENST00000384179 107 ntBASIC-1.22□□□□□ -2.6
MSH2P43246 MIR154-201ENST00000385243 84 ntBASIC-1.22□□□□□ -2.6
MSH2P43246 MIR527-201ENST00000385244 85 ntBASIC-1.22□□□□□ -2.6
MSH2P43246 U6.58-201ENST00000613107 107 ntBASIC-1.22□□□□□ -2.6
MSH2P43246 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.23□□□□□ -2.61
MSH2P43246 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.23□□□□□ -2.61
MSH2P43246 AL353691.2-201ENST00000443795 59 ntBASIC-1.24□□□□□ -2.61
MSH2P43246 snoU83B.1-201ENST00000517136 88 ntBASIC-1.24□□□□□ -2.61
MSH2P43246 MIR429-201ENST00000362106 83 ntBASIC-1.25□□□□□ -2.61
MSH2P43246 MIR409-201ENST00000362237 79 ntBASIC-1.25□□□□□ -2.61
MSH2P43246 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.25□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms