Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RNU7-88P-201ENST00000458752 63 ntBASIC-1.63□□□□□ -2.67
COL18A1P39060 RNU6-694P-201ENST00000364071 147 ntBASIC-1.64□□□□□ -2.67
COL18A1P39060 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.64□□□□□ -2.67
COL18A1P39060 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.64□□□□□ -2.67
COL18A1P39060 MIR6874-201ENST00000635894 71 ntBASIC-1.64□□□□□ -2.67
COL18A1P39060 RNU6-904P-201ENST00000516206 101 ntBASIC-1.64□□□□□ -2.67
COL18A1P39060 RNU6-656P-201ENST00000516785 107 ntBASIC-1.64□□□□□ -2.67
COL18A1P39060 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.65□□□□□ -2.67
COL18A1P39060 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.65□□□□□ -2.67
COL18A1P39060 MIR487B-201ENST00000385021 84 ntBASIC-1.66□□□□□ -2.68
COL18A1P39060 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.66□□□□□ -2.68
COL18A1P39060 RNU6-886P-201ENST00000384319 105 ntBASIC-1.67□□□□□ -2.68
COL18A1P39060 RNU6-807P-201ENST00000516805 107 ntBASIC-1.67□□□□□ -2.68
COL18A1P39060 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.67□□□□□ -2.68
COL18A1P39060 MIR548Q-201ENST00000408404 100 ntBASIC-1.67□□□□□ -2.68
COL18A1P39060 RNU7-200P-201ENST00000516105 62 ntBASIC-1.67□□□□□ -2.68
COL18A1P39060 RNU7-153P-201ENST00000516455 62 ntBASIC-1.67□□□□□ -2.68
COL18A1P39060 RNU6-971P-201ENST00000516920 106 ntBASIC-1.67□□□□□ -2.68
COL18A1P39060 AP002795.1-201ENST00000534879 84 ntBASIC-1.67□□□□□ -2.68
COL18A1P39060 SNORD77.2-201ENST00000391045 68 ntBASIC-1.68□□□□□ -2.68
COL18A1P39060 SNORD33.1-201ENST00000516213 88 ntBASIC-1.68□□□□□ -2.68
COL18A1P39060 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.68□□□□□ -2.68
COL18A1P39060 RNU6-774P-201ENST00000363238 107 ntBASIC-1.69□□□□□ -2.68
COL18A1P39060 AC018880.2-201ENST00000414265 201 ntBASIC-1.69□□□□□ -2.68
COL18A1P39060 AL035461.1-201ENST00000421490 332 ntBASIC-1.69□□□□□ -2.68
COL18A1P39060 U2.7-201ENST00000619197 100 ntBASIC-1.69□□□□□ -2.68
COL18A1P39060 RNU6-246P-201ENST00000384702 107 ntBASIC-1.7□□□□□ -2.68
COL18A1P39060 AC090616.4-201ENST00000448026 115 ntBASIC-1.7□□□□□ -2.68
COL18A1P39060 RNU7-61P-201ENST00000515897 61 ntBASIC-1.7□□□□□ -2.68
COL18A1P39060 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.7□□□□□ -2.68
COL18A1P39060 MIR519C-201ENST00000385053 87 ntBASIC-1.7□□□□□ -2.68
COL18A1P39060 MIR1302-5-201ENST00000408164 150 ntBASIC-1.7□□□□□ -2.68
COL18A1P39060 RNU6-659P-201ENST00000516454 104 ntBASIC-1.7□□□□□ -2.68
COL18A1P39060 SNORD116-21-201ENST00000384507 92 ntBASIC-1.71□□□□□ -2.68
COL18A1P39060 RNU6-230P-201ENST00000362457 104 ntBASIC-1.72□□□□□ -2.68
COL18A1P39060 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.72□□□□□ -2.68
COL18A1P39060 Y_RNA.74-201ENST00000362911 99 ntBASIC-1.72□□□□□ -2.69
COL18A1P39060 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.72□□□□□ -2.69
COL18A1P39060 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.72□□□□□ -2.69
COL18A1P39060 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.72□□□□□ -2.69
COL18A1P39060 RNU6-168P-201ENST00000516189 101 ntBASIC-1.72□□□□□ -2.69
COL18A1P39060 SNORD115-37-201ENST00000363768 82 ntBASIC-1.73□□□□□ -2.69
COL18A1P39060 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.73□□□□□ -2.69
COL18A1P39060 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.73□□□□□ -2.69
COL18A1P39060 MIR429-201ENST00000362106 83 ntBASIC-1.74□□□□□ -2.69
COL18A1P39060 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.74□□□□□ -2.69
COL18A1P39060 RPL35AP4-201ENST00000412007 102 ntBASIC-1.74□□□□□ -2.69
COL18A1P39060 MIR3675-201ENST00000583661 73 ntBASIC-1.74□□□□□ -2.69
COL18A1P39060 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.75□□□□□ -2.69
COL18A1P39060 MIR23C-201ENST00000579846 100 ntBASIC-1.75□□□□□ -2.69
COL18A1P39060 MIR548AG1-201ENST00000579932 66 ntBASIC-1.75□□□□□ -2.69
COL18A1P39060 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.75□□□□□ -2.69
COL18A1P39060 RNU6-645P-201ENST00000364649 106 ntBASIC-1.75□□□□□ -2.69
COL18A1P39060 MIR548C-201ENST00000384815 97 ntBASIC-1.75□□□□□ -2.69
COL18A1P39060 MIR590-201ENST00000385008 97 ntBASIC-1.75□□□□□ -2.69
COL18A1P39060 RNU6-696P-201ENST00000390834 107 ntBASIC-1.75□□□□□ -2.69
COL18A1P39060 RNU6-400P-201ENST00000391173 106 ntBASIC-1.75□□□□□ -2.69
COL18A1P39060 RNU6-79P-201ENST00000362511 107 ntBASIC-1.76□□□□□ -2.69
COL18A1P39060 U7.3-201ENST00000616123 62 ntBASIC-1.76□□□□□ -2.69
COL18A1P39060 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.77□□□□□ -2.69
COL18A1P39060 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.77□□□□□ -2.69
COL18A1P39060 RNU6-162P-201ENST00000516228 103 ntBASIC-1.77□□□□□ -2.69
COL18A1P39060 RNU6-624P-201ENST00000363411 107 ntBASIC-1.78□□□□□ -2.69
COL18A1P39060 RNU6-478P-201ENST00000363904 110 ntBASIC-1.78□□□□□ -2.69
COL18A1P39060 RNY1P5-201ENST00000383890 115 ntBASIC-1.78□□□□□ -2.69
COL18A1P39060 RNU6-458P-201ENST00000384179 107 ntBASIC-1.78□□□□□ -2.69
COL18A1P39060 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.78□□□□□ -2.69
COL18A1P39060 RNU6-695P-201ENST00000391157 104 ntBASIC-1.78□□□□□ -2.69
COL18A1P39060 U6.58-201ENST00000613107 107 ntBASIC-1.78□□□□□ -2.69
COL18A1P39060 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.79□□□□□ -2.7
COL18A1P39060 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.8□□□□□ -2.7
COL18A1P39060 RNU6-907P-201ENST00000390924 102 ntBASIC-1.8□□□□□ -2.7
COL18A1P39060 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.8□□□□□ -2.7
COL18A1P39060 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.8□□□□□ -2.7
COL18A1P39060 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.8□□□□□ -2.7
COL18A1P39060 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.8□□□□□ -2.7
COL18A1P39060 RNU6-987P-201ENST00000384759 104 ntBASIC-1.8□□□□□ -2.7
COL18A1P39060 RNU7-174P-201ENST00000516248 59 ntBASIC-1.8□□□□□ -2.7
COL18A1P39060 RNU6-346P-201ENST00000516288 111 ntBASIC-1.8□□□□□ -2.7
COL18A1P39060 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.8□□□□□ -2.7
COL18A1P39060 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.81□□□□□ -2.7
COL18A1P39060 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.82□□□□□ -2.7
COL18A1P39060 RNU6-633P-201ENST00000362612 103 ntBASIC-1.82□□□□□ -2.7
COL18A1P39060 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.82□□□□□ -2.7
COL18A1P39060 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.82□□□□□ -2.7
COL18A1P39060 AC093729.1-201ENST00000513074 128 ntBASIC-1.82□□□□□ -2.7
COL18A1P39060 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.83□□□□□ -2.7
COL18A1P39060 RNU6-587P-201ENST00000391282 106 ntBASIC-1.83□□□□□ -2.7
COL18A1P39060 MIR466-201ENST00000580653 84 ntBASIC-1.83□□□□□ -2.7
COL18A1P39060 MIR2052-201ENST00000636055 55 ntBASIC-1.83□□□□□ -2.7
COL18A1P39060 RNU6-630P-201ENST00000391258 106 ntBASIC-1.84□□□□□ -2.7
COL18A1P39060 RNU6-698P-201ENST00000363523 107 ntBASIC-1.85□□□□□ -2.7
COL18A1P39060 RNU6-34P-201ENST00000364874 107 ntBASIC-1.85□□□□□ -2.7
COL18A1P39060 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.85□□□□□ -2.7
COL18A1P39060 SNORD116-14-201ENST00000383894 92 ntBASIC-1.85□□□□□ -2.71
COL18A1P39060 SNORD116-17-201ENST00000383929 92 ntBASIC-1.85□□□□□ -2.71
COL18A1P39060 SNORD116-15-201ENST00000384445 92 ntBASIC-1.85□□□□□ -2.71
COL18A1P39060 SNORD116-19-201ENST00000384729 92 ntBASIC-1.85□□□□□ -2.71
COL18A1P39060 RNU6-109P-201ENST00000516364 107 ntBASIC-1.85□□□□□ -2.71
COL18A1P39060 RNU6-184P-201ENST00000516514 107 ntBASIC-1.85□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 339.1 ms