Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-35P-201ENST00000384530 107 ntBASIC0.69□□□□□ -2.3
MSX1P28360 SNORA68.3-201ENST00000515906 83 ntBASIC0.69□□□□□ -2.3
MSX1P28360 MIR4432-201ENST00000581823 84 ntBASIC0.69□□□□□ -2.3
MSX1P28360 MIR6835-201ENST00000621552 64 ntBASIC0.69□□□□□ -2.3
MSX1P28360 MIR103A1-201ENST00000362165 78 ntBASIC0.68□□□□□ -2.3
MSX1P28360 MIR508-201ENST00000384857 115 ntBASIC0.68□□□□□ -2.3
MSX1P28360 RNU6-127P-201ENST00000390897 107 ntBASIC0.68□□□□□ -2.3
MSX1P28360 MIR936-201ENST00000401264 98 ntBASIC0.68□□□□□ -2.3
MSX1P28360 AC108740.1-201ENST00000498629 225 ntBASIC0.68□□□□□ -2.3
MSX1P28360 RNA5SP330-201ENST00000517096 96 ntBASIC0.68□□□□□ -2.3
MSX1P28360 Y_RNA.433-201ENST00000384089 102 ntBASIC0.67□□□□□ -2.3
MSX1P28360 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.67□□□□□ -2.3
MSX1P28360 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.67□□□□□ -2.3
MSX1P28360 RNU7-160P-201ENST00000516660 62 ntBASIC0.67□□□□□ -2.3
MSX1P28360 U2.18-201ENST00000622185 84 ntBASIC0.67□□□□□ -2.3
MSX1P28360 AC010487.4-201ENST00000637027 61 ntBASIC0.67□□□□□ -2.3
MSX1P28360 Y_RNA.698-201ENST00000516798 118 ntBASIC0.66□□□□□ -2.3
MSX1P28360 MIRLET7D-201ENST00000362263 87 ntBASIC0.65□□□□□ -2.31
MSX1P28360 RNA5SP257-201ENST00000363023 116 ntBASIC0.65□□□□□ -2.31
MSX1P28360 MIR579-201ENST00000385221 98 ntBASIC0.65□□□□□ -2.31
MSX1P28360 RNA5SP121-201ENST00000516537 101 ntBASIC0.65□□□□□ -2.31
MSX1P28360 RNU7-151P-201ENST00000516930 53 ntBASIC0.65□□□□□ -2.31
MSX1P28360 MIR8087-201ENST00000612745 78 ntBASIC0.65□□□□□ -2.31
MSX1P28360 DLEU2_4.2-201ENST00000616613 58 ntBASIC0.65□□□□□ -2.31
MSX1P28360 RNU6-930P-201ENST00000390938 100 ntBASIC0.64□□□□□ -2.31
MSX1P28360 RNU7-55P-201ENST00000459426 62 ntBASIC0.64□□□□□ -2.31
MSX1P28360 RNU6-1262P-201ENST00000516217 96 ntBASIC0.64□□□□□ -2.31
MSX1P28360 RNU6-419P-201ENST00000517030 63 ntBASIC0.64□□□□□ -2.31
MSX1P28360 RNU6-815P-201ENST00000384080 113 ntBASIC0.63□□□□□ -2.31
MSX1P28360 RNU6-696P-201ENST00000390834 107 ntBASIC0.63□□□□□ -2.31
MSX1P28360 RNU6-1133P-201ENST00000410963 100 ntBASIC0.63□□□□□ -2.31
MSX1P28360 AL391099.1-201ENST00000624635 187 ntBASIC0.63□□□□□ -2.31
MSX1P28360 SNORA62.4-201ENST00000365504 151 ntBASIC0.62□□□□□ -2.31
MSX1P28360 MIR548AA1-201ENST00000384971 97 ntBASIC0.62□□□□□ -2.31
MSX1P28360 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.62□□□□□ -2.31
MSX1P28360 RNA5SP347-201ENST00000362445 119 ntBASIC0.61□□□□□ -2.31
MSX1P28360 RNU6-973P-201ENST00000364690 107 ntBASIC0.61□□□□□ -2.31
MSX1P28360 MIR4464-201ENST00000580818 92 ntBASIC0.61□□□□□ -2.31
MSX1P28360 MIR6888-201ENST00000621977 67 ntBASIC0.61□□□□□ -2.31
MSX1P28360 uc_338.36-201ENST00000622331 158 ntBASIC0.61□□□□□ -2.31
MSX1P28360 Y_RNA.69-201ENST00000362885 109 ntBASIC0.6□□□□□ -2.31
MSX1P28360 RNU6-900P-201ENST00000384498 102 ntBASIC0.6□□□□□ -2.31
MSX1P28360 MIR1197-201ENST00000408818 88 ntBASIC0.6□□□□□ -2.31
MSX1P28360 RNU6-1206P-201ENST00000516339 103 ntBASIC0.6□□□□□ -2.31
MSX1P28360 MIR643-201ENST00000385267 97 ntBASIC0.59□□□□□ -2.31
MSX1P28360 RNU6-995P-201ENST00000391244 107 ntBASIC0.59□□□□□ -2.31
MSX1P28360 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.59□□□□□ -2.31
MSX1P28360 MIR4711-201ENST00000578274 70 ntBASIC0.59□□□□□ -2.31
MSX1P28360 MIR6514-201ENST00000622549 70 ntBASIC0.59□□□□□ -2.31
MSX1P28360 RNA5SP193-201ENST00000410353 107 ntBASIC0.58□□□□□ -2.32
MSX1P28360 U7.5-201ENST00000517224 61 ntBASIC0.58□□□□□ -2.32
MSX1P28360 AC069113.3-201ENST00000521019 150 ntBASIC0.58□□□□□ -2.32
MSX1P28360 AL445584.3-201ENST00000617173 78 ntBASIC0.58□□□□□ -2.32
MSX1P28360 HAR1A.1-201ENST00000459583 118 ntBASIC0.57□□□□□ -2.32
MSX1P28360 CR383656.4-201ENST00000546909 122 ntBASIC0.57□□□□□ -2.32
MSX1P28360 MIR5087-201ENST00000635826 76 ntBASIC0.57□□□□□ -2.32
MSX1P28360 MIR548F3-201ENST00000408509 87 ntBASIC0.56□□□□□ -2.32
MSX1P28360 AC096531.1-201ENST00000419107 107 ntBASIC0.56□□□□□ -2.32
MSX1P28360 MIR330-201ENST00000362196 94 ntBASIC0.55□□□□□ -2.32
MSX1P28360 RNU6-838P-201ENST00000363399 108 ntBASIC0.55□□□□□ -2.32
MSX1P28360 MIR329-2-201ENST00000385029 84 ntBASIC0.55□□□□□ -2.32
MSX1P28360 SNORD57-201ENST00000448188 72 ntBASIC0.55□□□□□ -2.32
MSX1P28360 RNU7-88P-201ENST00000458752 63 ntBASIC0.55□□□□□ -2.32
MSX1P28360 RNA5SP476-201ENST00000516613 103 ntBASIC0.55□□□□□ -2.32
MSX1P28360 RNU6-180P-201ENST00000516697 61 ntBASIC0.55□□□□□ -2.32
MSX1P28360 RNU6-828P-201ENST00000364876 107 ntBASIC0.54□□□□□ -2.32
MSX1P28360 RNU6-455P-201ENST00000384681 107 ntBASIC0.54□□□□□ -2.32
MSX1P28360 MIR125B1-201ENST00000385236 88 ntBASIC0.54□□□□□ -2.32
MSX1P28360 RNA5SP163-201ENST00000410304 99 ntBASIC0.54□□□□□ -2.32
MSX1P28360 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.54□□□□□ -2.32
MSX1P28360 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.53□□□□□ -2.32
MSX1P28360 MIR148A-201ENST00000362215 68 ntBASIC0.53□□□□□ -2.32
MSX1P28360 RNU6-924P-201ENST00000362926 108 ntBASIC0.53□□□□□ -2.32
MSX1P28360 MIR92A1-201ENST00000385233 78 ntBASIC0.53□□□□□ -2.32
MSX1P28360 RNU6-1267P-201ENST00000410747 107 ntBASIC0.53□□□□□ -2.32
MSX1P28360 RNU6-1174P-201ENST00000517278 101 ntBASIC0.53□□□□□ -2.32
MSX1P28360 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
MSX1P28360 AC090625.1-201ENST00000357130 210 ntBASIC0.52□□□□□ -2.33
MSX1P28360 MIR892B-201ENST00000401279 77 ntBASIC0.52□□□□□ -2.33
MSX1P28360 MIR548H2-201ENST00000408874 88 ntBASIC0.52□□□□□ -2.33
MSX1P28360 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.51□□□□□ -2.33
MSX1P28360 SNORD63.1-201ENST00000516178 80 ntBASIC0.51□□□□□ -2.33
MSX1P28360 MIR6507-201ENST00000613630 70 ntBASIC0.51□□□□□ -2.33
MSX1P28360 RNU6-247P-201ENST00000362636 107 ntBASIC0.5□□□□□ -2.33
MSX1P28360 RNA5SP499-201ENST00000363982 119 ntBASIC0.5□□□□□ -2.33
MSX1P28360 Y_RNA.613-201ENST00000410726 97 ntBASIC0.5□□□□□ -2.33
MSX1P28360 RNU6-1327P-201ENST00000365302 105 ntBASIC0.49□□□□□ -2.33
MSX1P28360 SNORA62.5-201ENST00000516634 120 ntBASIC0.48□□□□□ -2.33
MSX1P28360 MIR6086-201ENST00000638065 55 ntBASIC0.48□□□□□ -2.33
MSX1P28360 AL451105.1-201ENST00000450005 189 ntBASIC0.47□□□□□ -2.33
MSX1P28360 MIR5704-201ENST00000584029 77 ntBASIC0.47□□□□□ -2.33
MSX1P28360 MIR4315-1-201ENST00000636800 73 ntBASIC0.46□□□□□ -2.34
MSX1P28360 MIR4315-2-201ENST00000640925 73 ntBASIC0.46□□□□□ -2.34
MSX1P28360 MIR610-201ENST00000385139 96 ntBASIC0.45□□□□□ -2.34
MSX1P28360 MIR4514-201ENST00000581410 57 ntBASIC0.45□□□□□ -2.34
MSX1P28360 MIR4743-201ENST00000584576 69 ntBASIC0.45□□□□□ -2.34
MSX1P28360 MIR6854-201ENST00000614935 69 ntBASIC0.45□□□□□ -2.34
MSX1P28360 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
MSX1P28360 RNA5SP285-201ENST00000516619 119 ntBASIC0.44□□□□□ -2.34
MSX1P28360 MIR8068-201ENST00000618032 68 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 196 ms