Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.2□□□□□ -2.6
FOXA1P55317 AL450471.1-201ENST00000447509 127 ntBASIC-1.21□□□□□ -2.6
FOXA1P55317 RNU6-752P-201ENST00000516376 102 ntBASIC-1.21□□□□□ -2.6
FOXA1P55317 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.22□□□□□ -2.6
FOXA1P55317 MIR590-201ENST00000385008 97 ntBASIC-1.22□□□□□ -2.6
FOXA1P55317 RNU7-153P-201ENST00000516455 62 ntBASIC-1.22□□□□□ -2.6
FOXA1P55317 RNU6-706P-201ENST00000517229 104 ntBASIC-1.22□□□□□ -2.6
FOXA1P55317 U4.2-201ENST00000618561 85 ntBASIC-1.22□□□□□ -2.6
FOXA1P55317 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.23□□□□□ -2.61
FOXA1P55317 RNU6-162P-201ENST00000516228 103 ntBASIC-1.23□□□□□ -2.61
FOXA1P55317 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.24□□□□□ -2.61
FOXA1P55317 SNORD115-22-201ENST00000364456 82 ntBASIC-1.24□□□□□ -2.61
FOXA1P55317 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.24□□□□□ -2.61
FOXA1P55317 SNORD116-14-201ENST00000383894 92 ntBASIC-1.24□□□□□ -2.61
FOXA1P55317 SNORD116-17-201ENST00000383929 92 ntBASIC-1.24□□□□□ -2.61
FOXA1P55317 SNORD116-15-201ENST00000384445 92 ntBASIC-1.24□□□□□ -2.61
FOXA1P55317 SNORD116-19-201ENST00000384729 92 ntBASIC-1.24□□□□□ -2.61
FOXA1P55317 MIR29B1-201ENST00000385015 81 ntBASIC-1.24□□□□□ -2.61
FOXA1P55317 MIR1302-5-201ENST00000408164 150 ntBASIC-1.24□□□□□ -2.61
FOXA1P55317 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.24□□□□□ -2.61
FOXA1P55317 RNU6-340P-201ENST00000364005 107 ntBASIC-1.25□□□□□ -2.61
FOXA1P55317 AL021921.1-201ENST00000442774 93 ntBASIC-1.25□□□□□ -2.61
FOXA1P55317 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.25□□□□□ -2.61
FOXA1P55317 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.25□□□□□ -2.61
FOXA1P55317 U7.3-201ENST00000616123 62 ntBASIC-1.25□□□□□ -2.61
FOXA1P55317 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.26□□□□□ -2.61
FOXA1P55317 RNU6-681P-201ENST00000364012 104 ntBASIC-1.26□□□□□ -2.61
FOXA1P55317 MIR1207-201ENST00000408249 87 ntBASIC-1.26□□□□□ -2.61
FOXA1P55317 RNU6-479P-201ENST00000516348 105 ntBASIC-1.26□□□□□ -2.61
FOXA1P55317 AC138207.3-201ENST00000585289 166 ntBASIC-1.26□□□□□ -2.61
FOXA1P55317 MIR6818-201ENST00000621576 65 ntBASIC-1.26□□□□□ -2.61
FOXA1P55317 AC132825.6-201ENST00000638861 357 ntBASIC-1.26□□□□□ -2.61
FOXA1P55317 MIR365A-201ENST00000362260 87 ntBASIC-1.27□□□□□ -2.61
FOXA1P55317 RNU4-61P-201ENST00000411243 107 ntBASIC-1.27□□□□□ -2.61
FOXA1P55317 AL353691.2-201ENST00000443795 59 ntBASIC-1.27□□□□□ -2.61
FOXA1P55317 RNU6-109P-201ENST00000516364 107 ntBASIC-1.27□□□□□ -2.61
FOXA1P55317 RNU6-184P-201ENST00000516514 107 ntBASIC-1.27□□□□□ -2.61
FOXA1P55317 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.28□□□□□ -2.61
FOXA1P55317 SNORD115-27-201ENST00000364430 82 ntBASIC-1.28□□□□□ -2.61
FOXA1P55317 SNORD114-3-201ENST00000364969 75 ntBASIC-1.28□□□□□ -2.61
FOXA1P55317 AL035461.1-201ENST00000421490 332 ntBASIC-1.28□□□□□ -2.61
FOXA1P55317 RNU7-134P-201ENST00000458997 64 ntBASIC-1.28□□□□□ -2.61
FOXA1P55317 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.28□□□□□ -2.61
FOXA1P55317 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.28□□□□□ -2.61
FOXA1P55317 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.28□□□□□ -2.61
FOXA1P55317 RNU6-576P-201ENST00000390854 102 ntBASIC-1.29□□□□□ -2.62
FOXA1P55317 SNORD77.2-201ENST00000391045 68 ntBASIC-1.29□□□□□ -2.62
FOXA1P55317 RNU6-656P-201ENST00000516785 107 ntBASIC-1.29□□□□□ -2.62
FOXA1P55317 AC090425.1-201ENST00000610007 140 ntBASIC-1.29□□□□□ -2.62
FOXA1P55317 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.29□□□□□ -2.62
FOXA1P55317 MIR519C-201ENST00000385053 87 ntBASIC-1.3□□□□□ -2.62
FOXA1P55317 RNU6-554P-201ENST00000410466 106 ntBASIC-1.3□□□□□ -2.62
FOXA1P55317 RNU6-732P-201ENST00000516033 103 ntBASIC-1.3□□□□□ -2.62
FOXA1P55317 MIR548AG1-201ENST00000579932 66 ntBASIC-1.3□□□□□ -2.62
FOXA1P55317 RNU6-106P-201ENST00000384405 107 ntBASIC-1.31□□□□□ -2.62
FOXA1P55317 MIR507-201ENST00000385234 94 ntBASIC-1.31□□□□□ -2.62
FOXA1P55317 RNU2-51P-201ENST00000410708 197 ntBASIC-1.31□□□□□ -2.62
FOXA1P55317 RNU7-88P-201ENST00000458752 63 ntBASIC-1.31□□□□□ -2.62
FOXA1P55317 RNA5SP461-201ENST00000516451 104 ntBASIC-1.31□□□□□ -2.62
FOXA1P55317 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.32□□□□□ -2.62
FOXA1P55317 RNU6-246P-201ENST00000384702 107 ntBASIC-1.32□□□□□ -2.62
FOXA1P55317 MIR8485-201ENST00000401372 91 ntBASIC-1.32□□□□□ -2.62
FOXA1P55317 MIR1285-2-201ENST00000408311 88 ntBASIC-1.32□□□□□ -2.62
FOXA1P55317 U7.5-201ENST00000517224 61 ntBASIC-1.32□□□□□ -2.62
FOXA1P55317 U2.7-201ENST00000619197 100 ntBASIC-1.32□□□□□ -2.62
FOXA1P55317 RNA5SP26-201ENST00000362406 119 ntBASIC-1.33□□□□□ -2.62
FOXA1P55317 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.33□□□□□ -2.62
FOXA1P55317 MIR527-201ENST00000385244 85 ntBASIC-1.33□□□□□ -2.62
FOXA1P55317 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1.33□□□□□ -2.62
FOXA1P55317 HLA-S-202ENST00000425174 53 ntBASIC-1.33□□□□□ -2.62
FOXA1P55317 RNA5SP180-201ENST00000516181 101 ntBASIC-1.33□□□□□ -2.62
FOXA1P55317 RNU6-1108P-201ENST00000516308 104 ntBASIC-1.33□□□□□ -2.62
FOXA1P55317 MIR4441-201ENST00000582623 100 ntBASIC-1.33□□□□□ -2.62
FOXA1P55317 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.34□□□□□ -2.62
FOXA1P55317 SNORA19-201ENST00000384737 128 ntBASIC-1.34□□□□□ -2.62
FOXA1P55317 RNU6-807P-201ENST00000516805 107 ntBASIC-1.34□□□□□ -2.62
FOXA1P55317 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.35□□□□□ -2.63
FOXA1P55317 Y_RNA.290-201ENST00000364879 114 ntBASIC-1.35□□□□□ -2.63
FOXA1P55317 SNORD19-201ENST00000391191 68 ntBASIC-1.35□□□□□ -2.63
FOXA1P55317 AP002795.1-201ENST00000534879 84 ntBASIC-1.35□□□□□ -2.63
FOXA1P55317 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.35□□□□□ -2.63
FOXA1P55317 SNORD115-37-201ENST00000363768 82 ntBASIC-1.36□□□□□ -2.63
FOXA1P55317 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.36□□□□□ -2.63
FOXA1P55317 RNU6-645P-201ENST00000364649 106 ntBASIC-1.36□□□□□ -2.63
FOXA1P55317 MTATP8P2-201ENST00000435212 202 ntBASIC-1.36□□□□□ -2.63
FOXA1P55317 MIR4490-201ENST00000582647 84 ntBASIC-1.36□□□□□ -2.63
FOXA1P55317 MIR5683-201ENST00000636514 76 ntBASIC-1.36□□□□□ -2.63
FOXA1P55317 RNU6-704P-201ENST00000364162 103 ntBASIC-1.37□□□□□ -2.63
FOXA1P55317 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.37□□□□□ -2.63
FOXA1P55317 RNU6-794P-201ENST00000517261 64 ntBASIC-1.37□□□□□ -2.63
FOXA1P55317 MIR5591-201ENST00000578248 65 ntBASIC-1.37□□□□□ -2.63
FOXA1P55317 MIR3133-201ENST00000583157 78 ntBASIC-1.37□□□□□ -2.63
FOXA1P55317 RNU6-633P-201ENST00000362612 103 ntBASIC-1.38□□□□□ -2.63
FOXA1P55317 RNU6-774P-201ENST00000363238 107 ntBASIC-1.38□□□□□ -2.63
FOXA1P55317 RNU6-226P-201ENST00000363778 107 ntBASIC-1.38□□□□□ -2.63
FOXA1P55317 MIR548C-201ENST00000384815 97 ntBASIC-1.38□□□□□ -2.63
FOXA1P55317 Y_RNA.703-201ENST00000516846 111 ntBASIC-1.38□□□□□ -2.63
FOXA1P55317 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.38□□□□□ -2.63
FOXA1P55317 RNU6-766P-201ENST00000362478 107 ntBASIC-1.39□□□□□ -2.63
FOXA1P55317 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.39□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms