Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 AC090617.8-201ENST00000623339 167 ntBASIC-0.54□□□□□ -2.5
PDX1P52945 SNORA2.1-201ENST00000363089 137 ntBASIC-0.55□□□□□ -2.5
PDX1P52945 SNORA3B-201ENST00000391305 131 ntBASIC-0.55□□□□□ -2.5
PDX1P52945 RNA5SP89-201ENST00000410300 108 ntBASIC-0.55□□□□□ -2.5
PDX1P52945 RNU6-592P-201ENST00000411333 103 ntBASIC-0.55□□□□□ -2.5
PDX1P52945 AL627230.5-201ENST00000619807 58 ntBASIC-0.55□□□□□ -2.5
PDX1P52945 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.55□□□□□ -2.5
PDX1P52945 MIR548BB-201ENST00000626714 66 ntBASIC-0.56□□□□□ -2.5
PDX1P52945 RNU6-340P-201ENST00000364005 107 ntBASIC-0.57□□□□□ -2.5
PDX1P52945 SNORD115-23-201ENST00000364461 82 ntBASIC-0.57□□□□□ -2.5
PDX1P52945 AC093729.1-201ENST00000513074 128 ntBASIC-0.57□□□□□ -2.5
PDX1P52945 RNU6-844P-201ENST00000517175 102 ntBASIC-0.57□□□□□ -2.5
PDX1P52945 AC140658.3-201ENST00000567603 271 ntBASIC-0.57□□□□□ -2.5
PDX1P52945 U6.96-201ENST00000636425 70 ntBASIC-0.57□□□□□ -2.5
PDX1P52945 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.58□□□□□ -2.5
PDX1P52945 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.58□□□□□ -2.5
PDX1P52945 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.58□□□□□ -2.5
PDX1P52945 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-0.58□□□□□ -2.5
PDX1P52945 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.59□□□□□ -2.5
PDX1P52945 RNU6-624P-201ENST00000363411 107 ntBASIC-0.59□□□□□ -2.5
PDX1P52945 RNU6-153P-201ENST00000364422 104 ntBASIC-0.59□□□□□ -2.5
PDX1P52945 SNORA33.1-201ENST00000364957 130 ntBASIC-0.59□□□□□ -2.5
PDX1P52945 RNU6-675P-201ENST00000384236 104 ntBASIC-0.59□□□□□ -2.5
PDX1P52945 RNU6-49P-201ENST00000384256 107 ntBASIC-0.59□□□□□ -2.5
PDX1P52945 MIR224-201ENST00000384889 81 ntBASIC-0.59□□□□□ -2.5
PDX1P52945 MIR518B-201ENST00000385127 83 ntBASIC-0.6□□□□□ -2.51
PDX1P52945 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.6□□□□□ -2.51
PDX1P52945 SNORD22.1-201ENST00000516331 125 ntBASIC-0.6□□□□□ -2.51
PDX1P52945 RNU6-752P-201ENST00000516376 102 ntBASIC-0.6□□□□□ -2.51
PDX1P52945 MIR548AX-201ENST00000580117 73 ntBASIC-0.6□□□□□ -2.51
PDX1P52945 MIR6854-201ENST00000614935 69 ntBASIC-0.6□□□□□ -2.51
PDX1P52945 MIR204-201ENST00000385200 110 ntBASIC-0.61□□□□□ -2.51
PDX1P52945 RNU6-881P-201ENST00000516813 102 ntBASIC-0.61□□□□□ -2.51
PDX1P52945 snoR1.1-201ENST00000628177 80 ntBASIC-0.61□□□□□ -2.51
PDX1P52945 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 RNU6-30P-201ENST00000384561 107 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 SNORA13-201ENST00000458790 133 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 MIR3179-1-201ENST00000578940 84 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 MIR3179-2-201ENST00000579107 84 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 MIR3179-3-201ENST00000579566 84 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 MIR4464-201ENST00000580818 92 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 MIR3179-4-201ENST00000617599 84 ntBASIC-0.62□□□□□ -2.51
PDX1P52945 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.63□□□□□ -2.51
PDX1P52945 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.63□□□□□ -2.51
PDX1P52945 SNORD74.6-201ENST00000364796 70 ntBASIC-0.63□□□□□ -2.51
PDX1P52945 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.63□□□□□ -2.51
PDX1P52945 MT-TQ-201ENST00000387372 72 ntBASIC-0.63□□□□□ -2.51
PDX1P52945 RNU4-63P-201ENST00000411313 118 ntBASIC-0.63□□□□□ -2.51
PDX1P52945 YWHAEP3-201ENST00000582767 121 ntBASIC-0.63□□□□□ -2.51
PDX1P52945 RNU6-681P-201ENST00000364012 104 ntBASIC-0.64□□□□□ -2.51
PDX1P52945 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.64□□□□□ -2.51
PDX1P52945 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.64□□□□□ -2.51
PDX1P52945 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.64□□□□□ -2.51
PDX1P52945 AC021146.6-201ENST00000514659 117 ntBASIC-0.64□□□□□ -2.51
PDX1P52945 MIR409-201ENST00000362237 79 ntBASIC-0.65□□□□□ -2.51
PDX1P52945 RNU6-431P-201ENST00000383874 107 ntBASIC-0.65□□□□□ -2.51
PDX1P52945 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.65□□□□□ -2.51
PDX1P52945 AL500527.2-201ENST00000454105 95 ntBASIC-0.65□□□□□ -2.51
PDX1P52945 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.65□□□□□ -2.51
PDX1P52945 snoMBII-202.2-201ENST00000517263 86 ntBASIC-0.65□□□□□ -2.51
PDX1P52945 Y_RNA.73-201ENST00000362910 113 ntBASIC-0.66□□□□□ -2.52
PDX1P52945 RNU6-478P-201ENST00000363904 110 ntBASIC-0.66□□□□□ -2.52
PDX1P52945 AC006160.2-201ENST00000637708 154 ntBASIC-0.66□□□□□ -2.52
PDX1P52945 RNA5SP331-201ENST00000364986 107 ntBASIC-0.67□□□□□ -2.52
PDX1P52945 MIR517B-201ENST00000385102 67 ntBASIC-0.67□□□□□ -2.52
PDX1P52945 AP000533.3-201ENST00000447704 118 ntBASIC-0.67□□□□□ -2.52
PDX1P52945 RNU6-557P-201ENST00000516842 110 ntBASIC-0.67□□□□□ -2.52
PDX1P52945 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.68□□□□□ -2.52
PDX1P52945 MIR521-2-201ENST00000384818 87 ntBASIC-0.68□□□□□ -2.52
PDX1P52945 MIR147A-201ENST00000385079 72 ntBASIC-0.68□□□□□ -2.52
PDX1P52945 AC022137.1-201ENST00000483735 151 ntBASIC-0.68□□□□□ -2.52
PDX1P52945 MIR6888-201ENST00000621977 67 ntBASIC-0.68□□□□□ -2.52
PDX1P52945 MIR6739-201ENST00000622461 75 ntBASIC-0.68□□□□□ -2.52
PDX1P52945 SNORD114-25-201ENST00000363742 72 ntBASIC-0.69□□□□□ -2.52
PDX1P52945 SNORD64-201ENST00000386683 67 ntBASIC-0.69□□□□□ -2.52
PDX1P52945 MIR1255B2-201ENST00000408618 67 ntBASIC-0.69□□□□□ -2.52
PDX1P52945 RNY4P30-201ENST00000410216 95 ntBASIC-0.69□□□□□ -2.52
PDX1P52945 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.69□□□□□ -2.52
PDX1P52945 RNU6-330P-201ENST00000363015 107 ntBASIC-0.7□□□□□ -2.52
PDX1P52945 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.7□□□□□ -2.52
PDX1P52945 MIR196A1-201ENST00000388006 70 ntBASIC-0.7□□□□□ -2.52
PDX1P52945 AL353803.5-201ENST00000599815 141 ntBASIC-0.7□□□□□ -2.52
PDX1P52945 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.71□□□□□ -2.52
PDX1P52945 RNU6-686P-201ENST00000364839 107 ntBASIC-0.71□□□□□ -2.52
PDX1P52945 RNU6-129P-201ENST00000391022 107 ntBASIC-0.71□□□□□ -2.52
PDX1P52945 RNU6-303P-201ENST00000517091 106 ntBASIC-0.71□□□□□ -2.52
PDX1P52945 CYP3A54P-201ENST00000566950 75 ntBASIC-0.71□□□□□ -2.52
PDX1P52945 AL445584.3-201ENST00000617173 78 ntBASIC-0.71□□□□□ -2.52
PDX1P52945 Y_RNA.81-201ENST00000362997 102 ntBASIC-0.72□□□□□ -2.52
PDX1P52945 SNORA8.1-201ENST00000384250 140 ntBASIC-0.72□□□□□ -2.52
PDX1P52945 MIR124-2-201ENST00000385081 109 ntBASIC-0.72□□□□□ -2.52
PDX1P52945 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.72□□□□□ -2.52
PDX1P52945 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.73□□□□□ -2.53
PDX1P52945 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.73□□□□□ -2.53
PDX1P52945 MIR382-201ENST00000637119 76 ntBASIC-0.73□□□□□ -2.53
PDX1P52945 RNY1P1-201ENST00000364372 112 ntBASIC-0.74□□□□□ -2.53
PDX1P52945 SNORA62.4-201ENST00000365504 151 ntBASIC-0.74□□□□□ -2.53
PDX1P52945 MIR5588-201ENST00000581890 63 ntBASIC-0.74□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 243.5 ms