Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AC018880.2-201ENST00000414265 201 ntBASIC-2.5□□□□□ -2.81
LIMS3P0CW19 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.5□□□□□ -2.81
LIMS3P0CW19 RNU6-1174P-201ENST00000517278 101 ntBASIC-2.5□□□□□ -2.81
LIMS3P0CW19 AL157777.2-201ENST00000258070 137 ntBASIC-2.51□□□□□ -2.81
LIMS3P0CW19 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.51□□□□□ -2.81
LIMS3P0CW19 AC012531.4-201ENST00000616509 177 ntBASIC-2.51□□□□□ -2.81
LIMS3P0CW19 RNU6-79P-201ENST00000362511 107 ntBASIC-2.52□□□□□ -2.81
LIMS3P0CW19 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.52□□□□□ -2.81
LIMS3P0CW19 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.52□□□□□ -2.81
LIMS3P0CW19 MIR569-201ENST00000385228 96 ntBASIC-2.52□□□□□ -2.81
LIMS3P0CW19 MIR548Q-201ENST00000408404 100 ntBASIC-2.52□□□□□ -2.81
LIMS3P0CW19 RNU6-772P-201ENST00000516042 105 ntBASIC-2.52□□□□□ -2.81
LIMS3P0CW19 RNU6-807P-201ENST00000516805 107 ntBASIC-2.52□□□□□ -2.81
LIMS3P0CW19 Y_RNA.96-201ENST00000363092 109 ntBASIC-2.53□□□□□ -2.81
LIMS3P0CW19 Y_RNA.307-201ENST00000365022 117 ntBASIC-2.53□□□□□ -2.81
LIMS3P0CW19 AL450471.1-201ENST00000447509 127 ntBASIC-2.53□□□□□ -2.81
LIMS3P0CW19 MIR664B-201ENST00000626756 61 ntBASIC-2.53□□□□□ -2.81
LIMS3P0CW19 RNU6-681P-201ENST00000364012 104 ntBASIC-2.54□□□□□ -2.82
LIMS3P0CW19 Y_RNA.400-201ENST00000383963 111 ntBASIC-2.54□□□□□ -2.82
LIMS3P0CW19 RNU6-887P-201ENST00000410660 100 ntBASIC-2.54□□□□□ -2.82
LIMS3P0CW19 Y_RNA.649-201ENST00000459077 103 ntBASIC-2.54□□□□□ -2.82
LIMS3P0CW19 MIR4756-201ENST00000577874 78 ntBASIC-2.54□□□□□ -2.82
LIMS3P0CW19 MIR548AG1-201ENST00000579932 66 ntBASIC-2.54□□□□□ -2.82
LIMS3P0CW19 MIR568-201ENST00000385036 95 ntBASIC-2.55□□□□□ -2.82
LIMS3P0CW19 MIR1236-201ENST00000408340 102 ntBASIC-2.55□□□□□ -2.82
LIMS3P0CW19 RNU6-394P-201ENST00000410735 107 ntBASIC-2.55□□□□□ -2.82
LIMS3P0CW19 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.55□□□□□ -2.82
LIMS3P0CW19 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-2.55□□□□□ -2.82
LIMS3P0CW19 Y_RNA.340-201ENST00000365330 92 ntBASIC-2.56□□□□□ -2.82
LIMS3P0CW19 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.57□□□□□ -2.82
LIMS3P0CW19 RNU6-656P-201ENST00000516785 107 ntBASIC-2.57□□□□□ -2.82
LIMS3P0CW19 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-2.57□□□□□ -2.82
LIMS3P0CW19 U2.7-201ENST00000619197 100 ntBASIC-2.57□□□□□ -2.82
LIMS3P0CW19 SNORD116-10-201ENST00000363791 102 ntBASIC-2.58□□□□□ -2.82
LIMS3P0CW19 Y_RNA.603-201ENST00000410571 108 ntBASIC-2.58□□□□□ -2.82
LIMS3P0CW19 RNU6-340P-201ENST00000364005 107 ntBASIC-2.59□□□□□ -2.82
LIMS3P0CW19 RNU6-478P-201ENST00000363904 110 ntBASIC-2.6□□□□□ -2.83
LIMS3P0CW19 RNU6-738P-201ENST00000384531 106 ntBASIC-2.6□□□□□ -2.83
LIMS3P0CW19 MIR496-201ENST00000385226 102 ntBASIC-2.6□□□□□ -2.83
LIMS3P0CW19 RNU6-118P-201ENST00000516552 102 ntBASIC-2.6□□□□□ -2.83
LIMS3P0CW19 SCARNA23-201ENST00000516060 130 ntBASIC-2.61□□□□□ -2.83
LIMS3P0CW19 Y_RNA.609-201ENST00000410669 89 ntBASIC-2.62□□□□□ -2.83
LIMS3P0CW19 RNU6-797P-201ENST00000363101 109 ntBASIC-2.63□□□□□ -2.83
LIMS3P0CW19 Y_RNA.236-201ENST00000364427 111 ntBASIC-2.63□□□□□ -2.83
LIMS3P0CW19 AL035461.1-201ENST00000421490 332 ntBASIC-2.63□□□□□ -2.83
LIMS3P0CW19 Y_RNA.8-201ENST00000362353 102 ntBASIC-2.64□□□□□ -2.83
LIMS3P0CW19 Y_RNA.190-201ENST00000363964 101 ntBASIC-2.64□□□□□ -2.83
LIMS3P0CW19 Y_RNA.193-201ENST00000363979 102 ntBASIC-2.64□□□□□ -2.83
LIMS3P0CW19 RNU6-695P-201ENST00000391157 104 ntBASIC-2.64□□□□□ -2.83
LIMS3P0CW19 RNU6-537P-201ENST00000517277 103 ntBASIC-2.64□□□□□ -2.83
LIMS3P0CW19 MIR3144-201ENST00000579460 79 ntBASIC-2.64□□□□□ -2.83
LIMS3P0CW19 RNU6-867P-201ENST00000364956 107 ntBASIC-2.65□□□□□ -2.83
LIMS3P0CW19 RNU6-458P-201ENST00000384179 107 ntBASIC-2.65□□□□□ -2.83
LIMS3P0CW19 RNU6-804P-201ENST00000384286 107 ntBASIC-2.65□□□□□ -2.83
LIMS3P0CW19 Y_RNA.489-201ENST00000384410 101 ntBASIC-2.65□□□□□ -2.83
LIMS3P0CW19 MIR548A3-201ENST00000385297 97 ntBASIC-2.65□□□□□ -2.83
LIMS3P0CW19 RNU6-696P-201ENST00000390834 107 ntBASIC-2.65□□□□□ -2.83
LIMS3P0CW19 U6.58-201ENST00000613107 107 ntBASIC-2.65□□□□□ -2.83
LIMS3P0CW19 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.65□□□□□ -2.83
LIMS3P0CW19 Y_RNA.398-201ENST00000383952 99 ntBASIC-2.66□□□□□ -2.84
LIMS3P0CW19 MIR548C-201ENST00000384815 97 ntBASIC-2.66□□□□□ -2.84
LIMS3P0CW19 MTND4LP9-201ENST00000427694 174 ntBASIC-2.66□□□□□ -2.84
LIMS3P0CW19 RNU6-426P-201ENST00000516464 97 ntBASIC-2.66□□□□□ -2.84
LIMS3P0CW19 Y_RNA.812-201ENST00000610788 101 ntBASIC-2.66□□□□□ -2.84
LIMS3P0CW19 Y_RNA.784-201ENST00000613803 101 ntBASIC-2.66□□□□□ -2.84
LIMS3P0CW19 Y_RNA.787-201ENST00000616522 101 ntBASIC-2.66□□□□□ -2.84
LIMS3P0CW19 Y_RNA.780-201ENST00000617336 101 ntBASIC-2.66□□□□□ -2.84
LIMS3P0CW19 Y_RNA.801-201ENST00000619005 101 ntBASIC-2.66□□□□□ -2.84
LIMS3P0CW19 MIR429-201ENST00000362106 83 ntBASIC-2.67□□□□□ -2.84
LIMS3P0CW19 RNU6-200P-201ENST00000364743 107 ntBASIC-2.67□□□□□ -2.84
LIMS3P0CW19 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.67□□□□□ -2.84
LIMS3P0CW19 SNORA63-201ENST00000363450 132 ntBASIC-2.68□□□□□ -2.84
LIMS3P0CW19 SNORD77.2-201ENST00000391045 68 ntBASIC-2.68□□□□□ -2.84
LIMS3P0CW19 MIR23C-201ENST00000579846 100 ntBASIC-2.68□□□□□ -2.84
LIMS3P0CW19 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.68□□□□□ -2.84
LIMS3P0CW19 RNU6-645P-201ENST00000364649 106 ntBASIC-2.69□□□□□ -2.84
LIMS3P0CW19 RNU6-841P-201ENST00000383872 107 ntBASIC-2.69□□□□□ -2.84
LIMS3P0CW19 Y_RNA.281-201ENST00000364774 94 ntBASIC-2.7□□□□□ -2.84
LIMS3P0CW19 RNU6-1152P-201ENST00000384576 107 ntBASIC-2.7□□□□□ -2.84
LIMS3P0CW19 RNU6-904P-201ENST00000516206 101 ntBASIC-2.7□□□□□ -2.84
LIMS3P0CW19 RNU6-980P-201ENST00000516925 103 ntBASIC-2.7□□□□□ -2.84
LIMS3P0CW19 MIR3914-2-201ENST00000637339 95 ntBASIC-2.7□□□□□ -2.84
LIMS3P0CW19 Y_RNA.74-201ENST00000362911 99 ntBASIC-2.71□□□□□ -2.84
LIMS3P0CW19 SNORA40-201ENST00000388090 126 ntBASIC-2.71□□□□□ -2.84
LIMS3P0CW19 RNU7-107P-201ENST00000459121 61 ntBASIC-2.71□□□□□ -2.84
LIMS3P0CW19 RNU7-153P-201ENST00000516455 62 ntBASIC-2.71□□□□□ -2.84
LIMS3P0CW19 MIR548AM-201ENST00000584298 74 ntBASIC-2.71□□□□□ -2.84
LIMS3P0CW19 Y_RNA.264-201ENST00000364665 102 ntBASIC-2.72□□□□□ -2.84
LIMS3P0CW19 RNU6-630P-201ENST00000391258 106 ntBASIC-2.72□□□□□ -2.84
LIMS3P0CW19 MIR3123-201ENST00000583417 75 ntBASIC-2.72□□□□□ -2.84
LIMS3P0CW19 AC004792.1-201ENST00000614523 137 ntBASIC-2.72□□□□□ -2.84
LIMS3P0CW19 RNU6-608P-201ENST00000383927 104 ntBASIC-2.73□□□□□ -2.85
LIMS3P0CW19 SNORD33.1-201ENST00000516213 88 ntBASIC-2.73□□□□□ -2.85
LIMS3P0CW19 RNA5SP405-201ENST00000363059 114 ntBASIC-2.74□□□□□ -2.85
LIMS3P0CW19 RNU6-1262P-201ENST00000516217 96 ntBASIC-2.74□□□□□ -2.85
LIMS3P0CW19 U6.95-201ENST00000636931 70 ntBASIC-2.74□□□□□ -2.85
LIMS3P0CW19 SNORD54-201ENST00000459159 67 ntBASIC-2.75□□□□□ -2.85
LIMS3P0CW19 RNU7-174P-201ENST00000516248 59 ntBASIC-2.75□□□□□ -2.85
LIMS3P0CW19 RNU6-1211P-201ENST00000459179 105 ntBASIC-2.76□□□□□ -2.85
LIMS3P0CW19 Y_RNA.712-201ENST00000517011 92 ntBASIC-2.76□□□□□ -2.85
Retrieved 100 of 98,524 protein–RNA pairs in 8.6 ms