Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 SNORD114-15-201ENST00000364687 72 ntBASIC0.07□□□□□ -2.4
CBX4O00257 RNU6-180P-201ENST00000516697 61 ntBASIC0.07□□□□□ -2.4
CBX4O00257 SNORA49-201ENST00000386157 136 ntBASIC0.06□□□□□ -2.4
CBX4O00257 SNORD78.1-201ENST00000390866 65 ntBASIC0.06□□□□□ -2.4
CBX4O00257 MIR4667-201ENST00000578933 66 ntBASIC0.06□□□□□ -2.4
CBX4O00257 RNA5SP331-201ENST00000364986 107 ntBASIC0.05□□□□□ -2.4
CBX4O00257 RNU7-165P-201ENST00000458864 60 ntBASIC0.05□□□□□ -2.4
CBX4O00257 RNA5SP147-201ENST00000516493 109 ntBASIC0.05□□□□□ -2.4
CBX4O00257 MIR4493-201ENST00000584016 73 ntBASIC0.05□□□□□ -2.4
CBX4O00257 RNU6-228P-201ENST00000362700 106 ntBASIC0.04□□□□□ -2.4
CBX4O00257 RNU6-302P-201ENST00000365249 107 ntBASIC0.04□□□□□ -2.4
CBX4O00257 AP001180.6-201ENST00000584918 159 ntBASIC0.04□□□□□ -2.4
CBX4O00257 MIR604-201ENST00000384880 94 ntBASIC0.03□□□□□ -2.4
CBX4O00257 MIR1255A-201ENST00000408338 113 ntBASIC0.03□□□□□ -2.4
CBX4O00257 MIR4290-201ENST00000583807 95 ntBASIC0.03□□□□□ -2.4
CBX4O00257 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.03□□□□□ -2.4
CBX4O00257 RNU6-330P-201ENST00000363015 107 ntBASIC0.02□□□□□ -2.41
CBX4O00257 SNORD114-16-201ENST00000363044 70 ntBASIC0.02□□□□□ -2.41
CBX4O00257 SNORA15B-2-201ENST00000384058 135 ntBASIC0.02□□□□□ -2.41
CBX4O00257 SNORA15B-1-201ENST00000384334 135 ntBASIC0.02□□□□□ -2.41
CBX4O00257 snoU13.13-201ENST00000458842 104 ntBASIC0.02□□□□□ -2.41
CBX4O00257 RNA5SP67-201ENST00000516422 131 ntBASIC0.02□□□□□ -2.41
CBX4O00257 AC145423.2-201ENST00000610631 239 ntBASIC0.02□□□□□ -2.41
CBX4O00257 RNU6-929P-201ENST00000384429 107 ntBASIC0.01□□□□□ -2.41
CBX4O00257 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
CBX4O00257 SNORD115-25-201ENST00000362619 82 ntBASIC0□□□□□ -2.41
CBX4O00257 AC104692.1-201ENST00000472406 90 ntBASIC0□□□□□ -2.41
CBX4O00257 AC108676.2-201ENST00000605225 163 ntBASIC0□□□□□ -2.41
CBX4O00257 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.02□□□□□ -2.41
CBX4O00257 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.02□□□□□ -2.41
CBX4O00257 AP000676.1-201ENST00000533307 52 ntBASIC-0.02□□□□□ -2.41
CBX4O00257 MIR6507-201ENST00000613630 70 ntBASIC-0.02□□□□□ -2.41
CBX4O00257 U6.96-201ENST00000636425 70 ntBASIC-0.02□□□□□ -2.41
CBX4O00257 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.02□□□□□ -2.41
CBX4O00257 RNU6-279P-201ENST00000391297 101 ntBASIC-0.03□□□□□ -2.41
CBX4O00257 SCARNA18B-201ENST00000458806 135 ntBASIC-0.03□□□□□ -2.41
CBX4O00257 MIR409-201ENST00000362237 79 ntBASIC-0.04□□□□□ -2.42
CBX4O00257 RNU6-46P-201ENST00000383860 107 ntBASIC-0.04□□□□□ -2.42
CBX4O00257 RNU6-24P-201ENST00000384440 107 ntBASIC-0.04□□□□□ -2.42
CBX4O00257 AC244250.2-201ENST00000418731 148 ntBASIC-0.04□□□□□ -2.42
CBX4O00257 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.04□□□□□ -2.42
CBX4O00257 SNORD45.1-201ENST00000363181 77 ntBASIC-0.05□□□□□ -2.42
CBX4O00257 RNU6-857P-201ENST00000515893 110 ntBASIC-0.05□□□□□ -2.42
CBX4O00257 RNU6-502P-201ENST00000362419 108 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 SNORD95.1-201ENST00000364099 68 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 SNORA33.1-201ENST00000364957 130 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 MIR214-201ENST00000385214 110 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
CBX4O00257 RNU6-337P-201ENST00000391243 106 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 MIR4645-201ENST00000583158 77 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 MIR6773-201ENST00000612812 74 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 U7.4-201ENST00000614961 63 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 MIR6739-201ENST00000622461 75 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 AC090617.8-201ENST00000623339 167 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 MIR664A-201ENST00000626086 82 ntBASIC-0.06□□□□□ -2.42
CBX4O00257 MIR655-201ENST00000362159 97 ntBASIC-0.07□□□□□ -2.42
CBX4O00257 MIR101-1-201ENST00000362265 75 ntBASIC-0.07□□□□□ -2.42
CBX4O00257 MIR521-2-201ENST00000384818 87 ntBASIC-0.07□□□□□ -2.42
CBX4O00257 RNU6-604P-201ENST00000390917 100 ntBASIC-0.07□□□□□ -2.42
CBX4O00257 RNU6-70P-201ENST00000516438 60 ntBASIC-0.07□□□□□ -2.42
CBX4O00257 MIR8053-201ENST00000613344 75 ntBASIC-0.07□□□□□ -2.42
CBX4O00257 MIR1295B-201ENST00000636144 60 ntBASIC-0.07□□□□□ -2.42
CBX4O00257 RNU6-455P-201ENST00000384681 107 ntBASIC-0.08□□□□□ -2.42
CBX4O00257 MIR9-2-201ENST00000384838 87 ntBASIC-0.08□□□□□ -2.42
CBX4O00257 RNA5SP266-201ENST00000410273 108 ntBASIC-0.08□□□□□ -2.42
CBX4O00257 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.08□□□□□ -2.42
CBX4O00257 RNA5SP225-201ENST00000410874 135 ntBASIC-0.08□□□□□ -2.42
CBX4O00257 MIRLET7B-201ENST00000385140 83 ntBASIC-0.09□□□□□ -2.42
CBX4O00257 SNORD49B-201ENST00000365172 72 ntBASIC-0.1□□□□□ -2.43
CBX4O00257 MIR3134-201ENST00000579433 74 ntBASIC-0.1□□□□□ -2.43
CBX4O00257 RNU6-645P-201ENST00000364649 106 ntBASIC-0.11□□□□□ -2.43
CBX4O00257 RNU6-900P-201ENST00000384498 102 ntBASIC-0.11□□□□□ -2.43
CBX4O00257 RPS29P8-201ENST00000445109 171 ntBASIC-0.11□□□□□ -2.43
CBX4O00257 RNU7-55P-201ENST00000459426 62 ntBASIC-0.11□□□□□ -2.43
CBX4O00257 RNU6-982P-201ENST00000516216 102 ntBASIC-0.11□□□□□ -2.43
CBX4O00257 RNU6-656P-201ENST00000516785 107 ntBASIC-0.11□□□□□ -2.43
CBX4O00257 SNORD114-28-201ENST00000363610 72 ntBASIC-0.12□□□□□ -2.43
CBX4O00257 SNORD115-22-201ENST00000364456 82 ntBASIC-0.12□□□□□ -2.43
CBX4O00257 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.12□□□□□ -2.43
CBX4O00257 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.12□□□□□ -2.43
CBX4O00257 SNORA32.1-201ENST00000364514 115 ntBASIC-0.13□□□□□ -2.43
CBX4O00257 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.13□□□□□ -2.43
CBX4O00257 MIR154-201ENST00000385243 84 ntBASIC-0.13□□□□□ -2.43
CBX4O00257 SNORA18.1-201ENST00000363418 128 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 SNORD115-23-201ENST00000364461 82 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 SNORD114-12-201ENST00000365400 75 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 SNORD45A-201ENST00000384512 84 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 SNORD56B-201ENST00000384713 71 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 RNA5SP451-201ENST00000410588 110 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 RNU6-881P-201ENST00000516813 102 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 CYP3A54P-201ENST00000566950 75 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 uc_338.36-201ENST00000622331 158 ntBASIC-0.14□□□□□ -2.43
CBX4O00257 RNU6-973P-201ENST00000364690 107 ntBASIC-0.15□□□□□ -2.43
CBX4O00257 RNU6-411P-201ENST00000384451 107 ntBASIC-0.15□□□□□ -2.43
CBX4O00257 MIR224-201ENST00000384889 81 ntBASIC-0.15□□□□□ -2.43
CBX4O00257 RNU6-1275P-201ENST00000391087 107 ntBASIC-0.15□□□□□ -2.43
CBX4O00257 RNU6-587P-201ENST00000391282 106 ntBASIC-0.15□□□□□ -2.43
CBX4O00257 SNORD57-201ENST00000448188 72 ntBASIC-0.15□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 223.4 ms