Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Gm43799-201ENSMUST00000201845 579 ntBASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Gm27528-202ENSMUST00000222916 2012 ntBASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 App-207ENSMUST00000227737 2827 ntBASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC12.84□□□□□ -0.35
Trav6-3Q5R1E6 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trav6-3Q5R1E6 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC12.83□□□□□ -0.35
Trav6-3Q5R1E6 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trav6-3Q5R1E6 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
Trav6-3Q5R1E6 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trav6-3Q5R1E6 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Gm9889-202ENSMUST00000206983 1577 ntBASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Gm8668-201ENSMUST00000120559 1447 ntBASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Gm11355-201ENSMUST00000121120 306 ntBASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Trav6-3Q5R1E6 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC12.81□□□□□ -0.36
Trav6-3Q5R1E6 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 76.2 ms