Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.57■□□□□ 0.4
Hmgb1P63158 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Hmgb1P63158 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.57■□□□□ 0.4
Hmgb1P63158 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.57■□□□□ 0.4
Hmgb1P63158 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Hmgb1P63158 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.57■□□□□ 0.4
Hmgb1P63158 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Hmgb1P63158 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.57■□□□□ 0.4
Hmgb1P63158 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Hmgb1P63158 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Hmgb1P63158 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC17.56■□□□□ 0.4
Hmgb1P63158 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC17.56■□□□□ 0.4
Hmgb1P63158 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.56■□□□□ 0.4
Hmgb1P63158 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Hmgb1P63158 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC17.55■□□□□ 0.4
Hmgb1P63158 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Hmgb1P63158 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17.55■□□□□ 0.4
Hmgb1P63158 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Hmgb1P63158 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.55■□□□□ 0.4
Hmgb1P63158 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Hmgb1P63158 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Gm38327-201ENSMUST00000195852 1755 ntBASIC17.55■□□□□ 0.4
Hmgb1P63158 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Hmgb1P63158 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Hmgb1P63158 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Hmgb1P63158 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.54■□□□□ 0.4
Hmgb1P63158 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Hmgb1P63158 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Gm10013-201ENSMUST00000106074 672 ntBASIC17.54■□□□□ 0.4
Hmgb1P63158 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Hmgb1P63158 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC17.54■□□□□ 0.4
Hmgb1P63158 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Hmgb1P63158 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.54■□□□□ 0.4
Hmgb1P63158 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms