Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-54P-201ENST00000365563 107 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 RNU6-1039P-201ENST00000383931 107 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 RNU6V-201ENST00000384105 107 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 SNORD45A-201ENST00000384512 84 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 MT-TY-201ENST00000387409 66 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 RNU6-663P-201ENST00000391105 106 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 AC114737.2-201ENST00000421583 173 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 RNU6-881P-201ENST00000516813 102 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 NAMPTP3-201ENST00000569273 224 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 MIR4460-201ENST00000577862 86 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 U6.111-201ENST00000636093 83 ntBASIC0.71□□□□□ -2.3
CCDC9Q9Y3X0 SNORD115-22-201ENST00000364456 82 ntBASIC0.7□□□□□ -2.3
CCDC9Q9Y3X0 VTRNA1-3-201ENST00000365645 89 ntBASIC0.7□□□□□ -2.3
CCDC9Q9Y3X0 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
CCDC9Q9Y3X0 RNU6-604P-201ENST00000390917 100 ntBASIC0.7□□□□□ -2.3
CCDC9Q9Y3X0 MIR6509-201ENST00000614603 85 ntBASIC0.7□□□□□ -2.3
CCDC9Q9Y3X0 MIR6828-201ENST00000636181 60 ntBASIC0.7□□□□□ -2.3
CCDC9Q9Y3X0 MIRLET7D-201ENST00000362263 87 ntBASIC0.69□□□□□ -2.3
CCDC9Q9Y3X0 RNU1-141P-201ENST00000364623 158 ntBASIC0.69□□□□□ -2.3
CCDC9Q9Y3X0 RNU6-269P-201ENST00000391077 97 ntBASIC0.69□□□□□ -2.3
CCDC9Q9Y3X0 AC125388.1-201ENST00000459631 156 ntBASIC0.69□□□□□ -2.3
CCDC9Q9Y3X0 SNORD113.1-201ENST00000363280 73 ntBASIC0.68□□□□□ -2.3
CCDC9Q9Y3X0 RNU6-800P-201ENST00000384473 103 ntBASIC0.68□□□□□ -2.3
CCDC9Q9Y3X0 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.68□□□□□ -2.3
CCDC9Q9Y3X0 AL162376.1-201ENST00000624117 175 ntBASIC0.68□□□□□ -2.3
CCDC9Q9Y3X0 RNU6-1216P-201ENST00000362590 107 ntBASIC0.67□□□□□ -2.3
CCDC9Q9Y3X0 Y_RNA.340-201ENST00000365330 92 ntBASIC0.67□□□□□ -2.3
CCDC9Q9Y3X0 Y_RNA.386-201ENST00000383913 105 ntBASIC0.67□□□□□ -2.3
CCDC9Q9Y3X0 MIR92A1-201ENST00000385233 78 ntBASIC0.67□□□□□ -2.3
CCDC9Q9Y3X0 RNA5SP63-201ENST00000391225 112 ntBASIC0.67□□□□□ -2.3
CCDC9Q9Y3X0 SNORD42B-201ENST00000458893 67 ntBASIC0.67□□□□□ -2.3
CCDC9Q9Y3X0 SNORD114-4-201ENST00000363962 75 ntBASIC0.66□□□□□ -2.3
CCDC9Q9Y3X0 RNU6-260P-201ENST00000384092 107 ntBASIC0.66□□□□□ -2.3
CCDC9Q9Y3X0 MIR203A-201ENST00000384836 110 ntBASIC0.66□□□□□ -2.3
CCDC9Q9Y3X0 RNA5SP484-201ENST00000458857 111 ntBASIC0.66□□□□□ -2.3
CCDC9Q9Y3X0 MIR7107-201ENST00000611489 80 ntBASIC0.66□□□□□ -2.3
CCDC9Q9Y3X0 AC069503.3-201ENST00000618674 145 ntBASIC0.66□□□□□ -2.3
CCDC9Q9Y3X0 AC073869.9-201ENST00000641610 120 ntBASIC0.66□□□□□ -2.3
CCDC9Q9Y3X0 RNU6-630P-201ENST00000391258 106 ntBASIC0.65□□□□□ -2.31
CCDC9Q9Y3X0 AL157398.1-201ENST00000452981 186 ntBASIC0.65□□□□□ -2.31
CCDC9Q9Y3X0 MIR3657-201ENST00000584818 117 ntBASIC0.65□□□□□ -2.31
CCDC9Q9Y3X0 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.64□□□□□ -2.31
CCDC9Q9Y3X0 SNORA2.1-201ENST00000363089 137 ntBASIC0.64□□□□□ -2.31
CCDC9Q9Y3X0 SNORA25.4-201ENST00000363666 124 ntBASIC0.64□□□□□ -2.31
CCDC9Q9Y3X0 Y_RNA.443-201ENST00000384135 111 ntBASIC0.64□□□□□ -2.31
CCDC9Q9Y3X0 SNORD116-24-201ENST00000384549 92 ntBASIC0.64□□□□□ -2.31
CCDC9Q9Y3X0 MIR1265-201ENST00000408444 86 ntBASIC0.64□□□□□ -2.31
CCDC9Q9Y3X0 RNU6-863P-201ENST00000515989 104 ntBASIC0.64□□□□□ -2.31
CCDC9Q9Y3X0 RNU5B-6P-201ENST00000516765 68 ntBASIC0.64□□□□□ -2.31
CCDC9Q9Y3X0 AC005520.4-201ENST00000604337 90 ntBASIC0.64□□□□□ -2.31
CCDC9Q9Y3X0 AC090625.1-201ENST00000357130 210 ntBASIC0.63□□□□□ -2.31
CCDC9Q9Y3X0 RNU6-471P-201ENST00000383944 106 ntBASIC0.63□□□□□ -2.31
CCDC9Q9Y3X0 MTND4LP1-201ENST00000446263 157 ntBASIC0.63□□□□□ -2.31
CCDC9Q9Y3X0 RNU6-982P-201ENST00000516216 102 ntBASIC0.62□□□□□ -2.31
CCDC9Q9Y3X0 SNORD44.1-201ENST00000363202 61 ntBASIC0.61□□□□□ -2.31
CCDC9Q9Y3X0 RNU6-668P-201ENST00000364180 107 ntBASIC0.61□□□□□ -2.31
CCDC9Q9Y3X0 RNU6-990P-201ENST00000364385 104 ntBASIC0.61□□□□□ -2.31
CCDC9Q9Y3X0 AC006210.1-201ENST00000424882 111 ntBASIC0.61□□□□□ -2.31
CCDC9Q9Y3X0 Y_RNA.250-201ENST00000364542 110 ntBASIC0.6□□□□□ -2.31
CCDC9Q9Y3X0 Y_RNA.407-201ENST00000383986 113 ntBASIC0.6□□□□□ -2.31
CCDC9Q9Y3X0 SNORD110-201ENST00000408189 75 ntBASIC0.6□□□□□ -2.31
CCDC9Q9Y3X0 AC023932.2-201ENST00000603176 175 ntBASIC0.6□□□□□ -2.31
CCDC9Q9Y3X0 RNU6-645P-201ENST00000364649 106 ntBASIC0.59□□□□□ -2.31
CCDC9Q9Y3X0 RNA5SP147-201ENST00000516493 109 ntBASIC0.59□□□□□ -2.31
CCDC9Q9Y3X0 SNORA40.17-201ENST00000517256 115 ntBASIC0.59□□□□□ -2.31
CCDC9Q9Y3X0 MIR6739-201ENST00000622461 75 ntBASIC0.59□□□□□ -2.31
CCDC9Q9Y3X0 SCARNA17.3-201ENST00000516381 125 ntBASIC0.58□□□□□ -2.32
CCDC9Q9Y3X0 MIR4511-201ENST00000582784 87 ntBASIC0.58□□□□□ -2.32
CCDC9Q9Y3X0 AC103706.3-201ENST00000636297 85 ntBASIC0.58□□□□□ -2.32
CCDC9Q9Y3X0 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.57□□□□□ -2.32
CCDC9Q9Y3X0 MIR103A1-201ENST00000362165 78 ntBASIC0.57□□□□□ -2.32
CCDC9Q9Y3X0 MIR652-201ENST00000385278 98 ntBASIC0.57□□□□□ -2.32
CCDC9Q9Y3X0 MIR5706-201ENST00000579841 80 ntBASIC0.57□□□□□ -2.32
CCDC9Q9Y3X0 MIR4473-201ENST00000583731 91 ntBASIC0.57□□□□□ -2.32
CCDC9Q9Y3X0 SNORA70.25-201ENST00000612741 95 ntBASIC0.57□□□□□ -2.32
CCDC9Q9Y3X0 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
CCDC9Q9Y3X0 RNU6-1162P-201ENST00000384443 104 ntBASIC0.56□□□□□ -2.32
CCDC9Q9Y3X0 AC069271.1-201ENST00000445577 156 ntBASIC0.56□□□□□ -2.32
CCDC9Q9Y3X0 RNU6-656P-201ENST00000516785 107 ntBASIC0.56□□□□□ -2.32
CCDC9Q9Y3X0 MIR4752-201ENST00000579672 72 ntBASIC0.56□□□□□ -2.32
CCDC9Q9Y3X0 RNU6-1327P-201ENST00000365302 105 ntBASIC0.55□□□□□ -2.32
CCDC9Q9Y3X0 MIR521-2-201ENST00000384818 87 ntBASIC0.55□□□□□ -2.32
CCDC9Q9Y3X0 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.55□□□□□ -2.32
CCDC9Q9Y3X0 AC021146.9-201ENST00000512503 156 ntBASIC0.55□□□□□ -2.32
CCDC9Q9Y3X0 MIR4636-201ENST00000582271 80 ntBASIC0.55□□□□□ -2.32
CCDC9Q9Y3X0 MIR548AE1-201ENST00000583292 70 ntBASIC0.55□□□□□ -2.32
CCDC9Q9Y3X0 uc_338.10-201ENST00000621872 182 ntBASIC0.55□□□□□ -2.32
CCDC9Q9Y3X0 SNORA63.6-201ENST00000364921 119 ntBASIC0.54□□□□□ -2.32
CCDC9Q9Y3X0 Y_RNA.375-201ENST00000365625 101 ntBASIC0.54□□□□□ -2.32
CCDC9Q9Y3X0 SNORA15B-2-201ENST00000384058 135 ntBASIC0.54□□□□□ -2.32
CCDC9Q9Y3X0 SNORA50A-201ENST00000384225 134 ntBASIC0.54□□□□□ -2.32
CCDC9Q9Y3X0 SNORA15B-1-201ENST00000384334 135 ntBASIC0.54□□□□□ -2.32
CCDC9Q9Y3X0 RNU6-542P-201ENST00000516405 103 ntBASIC0.54□□□□□ -2.32
CCDC9Q9Y3X0 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.54□□□□□ -2.32
CCDC9Q9Y3X0 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.54□□□□□ -2.32
CCDC9Q9Y3X0 RNA5SP215-201ENST00000363440 122 ntBASIC0.53□□□□□ -2.32
CCDC9Q9Y3X0 snoU13.13-201ENST00000458842 104 ntBASIC0.53□□□□□ -2.32
CCDC9Q9Y3X0 RNU1-29P-201ENST00000606574 126 ntBASIC0.53□□□□□ -2.32
CCDC9Q9Y3X0 U7.6-201ENST00000610841 64 ntBASIC0.53□□□□□ -2.32
CCDC9Q9Y3X0 MIR6759-201ENST00000638110 65 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 225.4 ms