Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 MIR6779-201ENST00000617283 64 ntBASIC1.41□□□□□ -2.18
CUEDC1Q9NWM3 CYP3A54P-201ENST00000566950 75 ntBASIC1.4□□□□□ -2.19
CUEDC1Q9NWM3 MIR6515-201ENST00000619843 57 ntBASIC1.4□□□□□ -2.19
CUEDC1Q9NWM3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
CUEDC1Q9NWM3 Y_RNA.74-201ENST00000362911 99 ntBASIC1.39□□□□□ -2.19
CUEDC1Q9NWM3 MIR548AE1-201ENST00000583292 70 ntBASIC1.39□□□□□ -2.19
CUEDC1Q9NWM3 U6.96-201ENST00000636425 70 ntBASIC1.39□□□□□ -2.19
CUEDC1Q9NWM3 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
CUEDC1Q9NWM3 SNORD116-16-201ENST00000384533 92 ntBASIC1.38□□□□□ -2.19
CUEDC1Q9NWM3 MIR4661-201ENST00000582720 75 ntBASIC1.38□□□□□ -2.19
CUEDC1Q9NWM3 MIR7974-201ENST00000615835 79 ntBASIC1.38□□□□□ -2.19
CUEDC1Q9NWM3 RNA5SP268-201ENST00000516828 124 ntBASIC1.37□□□□□ -2.19
CUEDC1Q9NWM3 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC1.37□□□□□ -2.19
CUEDC1Q9NWM3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CUEDC1Q9NWM3 RNA5SP325-201ENST00000363756 130 ntBASIC1.36□□□□□ -2.19
CUEDC1Q9NWM3 RNA5SP61-201ENST00000516453 100 ntBASIC1.36□□□□□ -2.19
CUEDC1Q9NWM3 MIR4473-201ENST00000583731 91 ntBASIC1.36□□□□□ -2.19
CUEDC1Q9NWM3 MIR18A-201ENST00000362310 71 ntBASIC1.35□□□□□ -2.19
CUEDC1Q9NWM3 SNORA9.1-201ENST00000362412 131 ntBASIC1.35□□□□□ -2.19
CUEDC1Q9NWM3 SNORA36.1-201ENST00000363424 132 ntBASIC1.35□□□□□ -2.19
CUEDC1Q9NWM3 MIR516B1-201ENST00000385211 90 ntBASIC1.35□□□□□ -2.19
CUEDC1Q9NWM3 SNORD2-201ENST00000459163 69 ntBASIC1.35□□□□□ -2.19
CUEDC1Q9NWM3 DLEU2_4.2-201ENST00000616613 58 ntBASIC1.35□□□□□ -2.19
CUEDC1Q9NWM3 AC244090.1-201ENST00000441884 93 ntBASIC1.34□□□□□ -2.19
CUEDC1Q9NWM3 RNU6-518P-201ENST00000516056 96 ntBASIC1.34□□□□□ -2.19
CUEDC1Q9NWM3 RNU6-1223P-201ENST00000517124 104 ntBASIC1.34□□□□□ -2.19
CUEDC1Q9NWM3 MIR7110-201ENST00000612638 86 ntBASIC1.34□□□□□ -2.19
CUEDC1Q9NWM3 AC243829.6-201ENST00000612652 106 ntBASIC1.34□□□□□ -2.19
CUEDC1Q9NWM3 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.33□□□□□ -2.2
CUEDC1Q9NWM3 RNU4-33P-201ENST00000364316 85 ntBASIC1.33□□□□□ -2.2
CUEDC1Q9NWM3 MIR598-201ENST00000384868 97 ntBASIC1.33□□□□□ -2.2
CUEDC1Q9NWM3 RNU6-1246P-201ENST00000391064 107 ntBASIC1.33□□□□□ -2.2
CUEDC1Q9NWM3 OR2A41P-201ENST00000473586 105 ntBASIC1.33□□□□□ -2.2
CUEDC1Q9NWM3 AC243829.3-201ENST00000622177 108 ntBASIC1.33□□□□□ -2.2
CUEDC1Q9NWM3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.33□□□□□ -2.2
CUEDC1Q9NWM3 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CUEDC1Q9NWM3 RNA5SP255-201ENST00000516370 107 ntBASIC1.32□□□□□ -2.2
CUEDC1Q9NWM3 MIR5706-201ENST00000579841 80 ntBASIC1.32□□□□□ -2.2
CUEDC1Q9NWM3 PVT1_3.1-201ENST00000620853 95 ntBASIC1.32□□□□□ -2.2
CUEDC1Q9NWM3 MIR20A-201ENST00000362279 71 ntBASIC1.31□□□□□ -2.2
CUEDC1Q9NWM3 Y_RNA.282-201ENST00000364793 102 ntBASIC1.31□□□□□ -2.2
CUEDC1Q9NWM3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.31□□□□□ -2.2
CUEDC1Q9NWM3 RNA5SP94-201ENST00000516917 108 ntBASIC1.31□□□□□ -2.2
CUEDC1Q9NWM3 SNORA40.16-201ENST00000517238 121 ntBASIC1.31□□□□□ -2.2
CUEDC1Q9NWM3 MIR7107-201ENST00000611489 80 ntBASIC1.31□□□□□ -2.2
CUEDC1Q9NWM3 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
CUEDC1Q9NWM3 RNU1-93P-201ENST00000364704 169 ntBASIC1.3□□□□□ -2.2
CUEDC1Q9NWM3 SNORD116.2-201ENST00000391251 93 ntBASIC1.3□□□□□ -2.2
CUEDC1Q9NWM3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.3□□□□□ -2.2
CUEDC1Q9NWM3 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.29□□□□□ -2.2
CUEDC1Q9NWM3 RNU6-35P-201ENST00000384530 107 ntBASIC1.29□□□□□ -2.2
CUEDC1Q9NWM3 MIR527-201ENST00000385244 85 ntBASIC1.29□□□□□ -2.2
CUEDC1Q9NWM3 AC011195.1-201ENST00000578177 177 ntBASIC1.29□□□□□ -2.2
CUEDC1Q9NWM3 MIR548X-201ENST00000580069 75 ntBASIC1.29□□□□□ -2.2
CUEDC1Q9NWM3 MIR151B-201ENST00000584249 96 ntBASIC1.29□□□□□ -2.2
CUEDC1Q9NWM3 RNU6-930P-201ENST00000390938 100 ntBASIC1.28□□□□□ -2.2
CUEDC1Q9NWM3 MIR1255B2-201ENST00000408618 67 ntBASIC1.28□□□□□ -2.2
CUEDC1Q9NWM3 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.27□□□□□ -2.21
CUEDC1Q9NWM3 MIR96-201ENST00000362288 78 ntBASIC1.27□□□□□ -2.21
CUEDC1Q9NWM3 RNU6-246P-201ENST00000384702 107 ntBASIC1.27□□□□□ -2.21
CUEDC1Q9NWM3 MIR519A2-201ENST00000384990 87 ntBASIC1.27□□□□□ -2.21
CUEDC1Q9NWM3 SNORA40B-201ENST00000385573 128 ntBASIC1.27□□□□□ -2.21
CUEDC1Q9NWM3 SNORD99-201ENST00000408612 74 ntBASIC1.27□□□□□ -2.21
CUEDC1Q9NWM3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.27□□□□□ -2.21
CUEDC1Q9NWM3 RNU7-154P-201ENST00000516194 62 ntBASIC1.27□□□□□ -2.21
CUEDC1Q9NWM3 MIR6788-201ENST00000618842 66 ntBASIC1.27□□□□□ -2.21
CUEDC1Q9NWM3 HMGN2P22-201ENST00000427588 175 ntBASIC1.26□□□□□ -2.21
CUEDC1Q9NWM3 AC068338.1-201ENST00000565567 176 ntBASIC1.26□□□□□ -2.21
CUEDC1Q9NWM3 SNORA70.25-201ENST00000612741 95 ntBASIC1.26□□□□□ -2.21
CUEDC1Q9NWM3 AC090617.8-201ENST00000623339 167 ntBASIC1.26□□□□□ -2.21
CUEDC1Q9NWM3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
CUEDC1Q9NWM3 MIR429-201ENST00000362106 83 ntBASIC1.25□□□□□ -2.21
CUEDC1Q9NWM3 RNA5SP470-201ENST00000516463 106 ntBASIC1.25□□□□□ -2.21
CUEDC1Q9NWM3 MIR520E-201ENST00000384867 87 ntBASIC1.24□□□□□ -2.21
CUEDC1Q9NWM3 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
CUEDC1Q9NWM3 MIR3660-201ENST00000584845 100 ntBASIC1.24□□□□□ -2.21
CUEDC1Q9NWM3 SNORD114-29-201ENST00000364819 70 ntBASIC1.23□□□□□ -2.21
CUEDC1Q9NWM3 U7.6-201ENST00000610841 64 ntBASIC1.23□□□□□ -2.21
CUEDC1Q9NWM3 RPS29P1-201ENST00000465274 159 ntBASIC1.22□□□□□ -2.21
CUEDC1Q9NWM3 MIR548F3-201ENST00000408509 87 ntBASIC1.21□□□□□ -2.22
CUEDC1Q9NWM3 SNORD115-25-201ENST00000362619 82 ntBASIC1.2□□□□□ -2.22
CUEDC1Q9NWM3 Y_RNA.374-201ENST00000365606 101 ntBASIC1.2□□□□□ -2.22
CUEDC1Q9NWM3 RNU6-337P-201ENST00000391243 106 ntBASIC1.2□□□□□ -2.22
CUEDC1Q9NWM3 MIR548J-201ENST00000408833 112 ntBASIC1.2□□□□□ -2.22
CUEDC1Q9NWM3 ACA64.5-201ENST00000516207 127 ntBASIC1.2□□□□□ -2.22
CUEDC1Q9NWM3 RNU1-29P-201ENST00000606574 126 ntBASIC1.2□□□□□ -2.22
CUEDC1Q9NWM3 MIR6773-201ENST00000612812 74 ntBASIC1.2□□□□□ -2.22
CUEDC1Q9NWM3 RNU6-810P-201ENST00000364001 107 ntBASIC1.19□□□□□ -2.22
CUEDC1Q9NWM3 RNU6-172P-201ENST00000411000 93 ntBASIC1.19□□□□□ -2.22
CUEDC1Q9NWM3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.19□□□□□ -2.22
CUEDC1Q9NWM3 MIR4752-201ENST00000579672 72 ntBASIC1.19□□□□□ -2.22
CUEDC1Q9NWM3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
CUEDC1Q9NWM3 SNORD1B-201ENST00000363091 84 ntBASIC1.18□□□□□ -2.22
CUEDC1Q9NWM3 MIR608-201ENST00000384820 100 ntBASIC1.18□□□□□ -2.22
CUEDC1Q9NWM3 AC211469.2-201ENST00000605461 205 ntBASIC1.18□□□□□ -2.22
CUEDC1Q9NWM3 AL353765.1-201ENST00000605514 183 ntBASIC1.18□□□□□ -2.22
CUEDC1Q9NWM3 RNA5SP222-201ENST00000411039 105 ntBASIC1.17□□□□□ -2.22
CUEDC1Q9NWM3 RNU6-838P-201ENST00000363399 108 ntBASIC1.16□□□□□ -2.22
CUEDC1Q9NWM3 Y_RNA.109-201ENST00000363215 102 ntBASIC1.15□□□□□ -2.23
CUEDC1Q9NWM3 SNORA49-201ENST00000386157 136 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms