Protein–RNA interactions for Protein: Q9H3S1

SEMA4A, Semaphorin-4A, humanhuman

Predictions only

Length 761 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4AQ9H3S1 MIR7107-201ENST00000611489 80 ntBASIC0.93□□□□□ -2.26
SEMA4AQ9H3S1 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
SEMA4AQ9H3S1 SNORA2.1-201ENST00000363089 137 ntBASIC0.92□□□□□ -2.26
SEMA4AQ9H3S1 SNORA8.2-201ENST00000384372 139 ntBASIC0.92□□□□□ -2.26
SEMA4AQ9H3S1 MIR652-201ENST00000385278 98 ntBASIC0.92□□□□□ -2.26
SEMA4AQ9H3S1 RNA5SP94-201ENST00000516917 108 ntBASIC0.92□□□□□ -2.26
SEMA4AQ9H3S1 SNORA70.25-201ENST00000612741 95 ntBASIC0.92□□□□□ -2.26
SEMA4AQ9H3S1 SNORA36.2-201ENST00000384004 127 ntBASIC0.91□□□□□ -2.26
SEMA4AQ9H3S1 MTND4LP19-201ENST00000403051 166 ntBASIC0.91□□□□□ -2.26
SEMA4AQ9H3S1 MIR4698-201ENST00000577795 80 ntBASIC0.91□□□□□ -2.26
SEMA4AQ9H3S1 AC092634.7-201ENST00000621022 103 ntBASIC0.91□□□□□ -2.26
SEMA4AQ9H3S1 AL162376.1-201ENST00000624117 175 ntBASIC0.91□□□□□ -2.26
SEMA4AQ9H3S1 MIR582-201ENST00000365731 98 ntBASIC0.9□□□□□ -2.27
SEMA4AQ9H3S1 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC0.9□□□□□ -2.27
SEMA4AQ9H3S1 AL157398.1-201ENST00000452981 186 ntBASIC0.9□□□□□ -2.27
SEMA4AQ9H3S1 RNA5SP476-201ENST00000516613 103 ntBASIC0.9□□□□□ -2.27
SEMA4AQ9H3S1 AC069503.3-201ENST00000618674 145 ntBASIC0.9□□□□□ -2.27
SEMA4AQ9H3S1 RNA5SP62-201ENST00000363457 110 ntBASIC0.89□□□□□ -2.27
SEMA4AQ9H3S1 RNA5SP192-201ENST00000364404 120 ntBASIC0.89□□□□□ -2.27
SEMA4AQ9H3S1 RNA5SP299-201ENST00000391203 116 ntBASIC0.89□□□□□ -2.27
SEMA4AQ9H3S1 SNORD110-201ENST00000408189 75 ntBASIC0.89□□□□□ -2.27
SEMA4AQ9H3S1 AC110620.1-201ENST00000416042 228 ntBASIC0.89□□□□□ -2.27
SEMA4AQ9H3S1 AC006210.1-201ENST00000424882 111 ntBASIC0.89□□□□□ -2.27
SEMA4AQ9H3S1 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.89□□□□□ -2.27
SEMA4AQ9H3S1 MIR6828-201ENST00000636181 60 ntBASIC0.89□□□□□ -2.27
SEMA4AQ9H3S1 AC103706.3-201ENST00000636297 85 ntBASIC0.89□□□□□ -2.27
SEMA4AQ9H3S1 AC021146.9-201ENST00000512503 156 ntBASIC0.88□□□□□ -2.27
SEMA4AQ9H3S1 MIR4653-201ENST00000585107 83 ntBASIC0.88□□□□□ -2.27
SEMA4AQ9H3S1 SNORA33.1-201ENST00000364957 130 ntBASIC0.87□□□□□ -2.27
SEMA4AQ9H3S1 Y_RNA.375-201ENST00000365625 101 ntBASIC0.87□□□□□ -2.27
SEMA4AQ9H3S1 MIR630-201ENST00000384957 97 ntBASIC0.87□□□□□ -2.27
SEMA4AQ9H3S1 SNORA75.1-201ENST00000391130 148 ntBASIC0.87□□□□□ -2.27
SEMA4AQ9H3S1 AC069271.1-201ENST00000445577 156 ntBASIC0.87□□□□□ -2.27
SEMA4AQ9H3S1 HAR1A.1-201ENST00000459583 118 ntBASIC0.87□□□□□ -2.27
SEMA4AQ9H3S1 RNU6-1089P-201ENST00000516473 104 ntBASIC0.87□□□□□ -2.27
SEMA4AQ9H3S1 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.87□□□□□ -2.27
SEMA4AQ9H3S1 SNORA25.18-201ENST00000607153 114 ntBASIC0.87□□□□□ -2.27
SEMA4AQ9H3S1 RNU6-499P-201ENST00000365615 107 ntBASIC0.86□□□□□ -2.27
SEMA4AQ9H3S1 MIR146A-201ENST00000385201 99 ntBASIC0.86□□□□□ -2.27
SEMA4AQ9H3S1 RNU6-351P-201ENST00000516097 100 ntBASIC0.86□□□□□ -2.27
SEMA4AQ9H3S1 ACA64.5-201ENST00000516207 127 ntBASIC0.86□□□□□ -2.27
SEMA4AQ9H3S1 MIR6739-201ENST00000622461 75 ntBASIC0.86□□□□□ -2.27
SEMA4AQ9H3S1 SNORD114-2-201ENST00000363953 78 ntBASIC0.85□□□□□ -2.27
SEMA4AQ9H3S1 RNA5SP517-201ENST00000364724 117 ntBASIC0.85□□□□□ -2.27
SEMA4AQ9H3S1 Y_RNA.407-201ENST00000383986 113 ntBASIC0.84□□□□□ -2.27
SEMA4AQ9H3S1 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.84□□□□□ -2.27
SEMA4AQ9H3S1 RNU6-1232P-201ENST00000516299 86 ntBASIC0.84□□□□□ -2.27
SEMA4AQ9H3S1 RNU6-542P-201ENST00000516405 103 ntBASIC0.84□□□□□ -2.27
SEMA4AQ9H3S1 MIR6835-201ENST00000621552 64 ntBASIC0.84□□□□□ -2.27
SEMA4AQ9H3S1 RNU6-1079P-201ENST00000362861 110 ntBASIC0.83□□□□□ -2.28
SEMA4AQ9H3S1 MIR140-201ENST00000385282 100 ntBASIC0.83□□□□□ -2.28
SEMA4AQ9H3S1 MIR548E-201ENST00000408287 88 ntBASIC0.83□□□□□ -2.28
SEMA4AQ9H3S1 HMGN2P22-201ENST00000427588 175 ntBASIC0.83□□□□□ -2.28
SEMA4AQ9H3S1 PSMC1P5-201ENST00000512850 177 ntBASIC0.83□□□□□ -2.28
SEMA4AQ9H3S1 SCARNA17.3-201ENST00000516381 125 ntBASIC0.83□□□□□ -2.28
SEMA4AQ9H3S1 RNU4-54P-201ENST00000516428 129 ntBASIC0.83□□□□□ -2.28
SEMA4AQ9H3S1 MIR4711-201ENST00000578274 70 ntBASIC0.83□□□□□ -2.28
SEMA4AQ9H3S1 RNA5SP347-201ENST00000362445 119 ntBASIC0.82□□□□□ -2.28
SEMA4AQ9H3S1 SNORA25.5-201ENST00000363782 126 ntBASIC0.82□□□□□ -2.28
SEMA4AQ9H3S1 SNORD114-4-201ENST00000363962 75 ntBASIC0.82□□□□□ -2.28
SEMA4AQ9H3S1 RNU6-1162P-201ENST00000384443 104 ntBASIC0.82□□□□□ -2.28
SEMA4AQ9H3S1 SCARNA21.1-201ENST00000515996 128 ntBASIC0.82□□□□□ -2.28
SEMA4AQ9H3S1 MIR466-201ENST00000580653 84 ntBASIC0.82□□□□□ -2.28
SEMA4AQ9H3S1 RNU1-29P-201ENST00000606574 126 ntBASIC0.82□□□□□ -2.28
SEMA4AQ9H3S1 MIR521-2-201ENST00000384818 87 ntBASIC0.81□□□□□ -2.28
SEMA4AQ9H3S1 AC090617.8-201ENST00000623339 167 ntBASIC0.81□□□□□ -2.28
SEMA4AQ9H3S1 Y_RNA.423-201ENST00000384057 113 ntBASIC0.8□□□□□ -2.28
SEMA4AQ9H3S1 RNU6-35P-201ENST00000384530 107 ntBASIC0.8□□□□□ -2.28
SEMA4AQ9H3S1 RNA5SP193-201ENST00000410353 107 ntBASIC0.8□□□□□ -2.28
SEMA4AQ9H3S1 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.8□□□□□ -2.28
SEMA4AQ9H3S1 U2.7-201ENST00000619197 100 ntBASIC0.79□□□□□ -2.28
SEMA4AQ9H3S1 Y_RNA.125-201ENST00000363371 111 ntBASIC0.78□□□□□ -2.28
SEMA4AQ9H3S1 SNORA63.6-201ENST00000364921 119 ntBASIC0.78□□□□□ -2.28
SEMA4AQ9H3S1 MIR508-201ENST00000384857 115 ntBASIC0.78□□□□□ -2.28
SEMA4AQ9H3S1 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.78□□□□□ -2.28
SEMA4AQ9H3S1 MIR1197-201ENST00000408818 88 ntBASIC0.78□□□□□ -2.28
SEMA4AQ9H3S1 Y_RNA.633-201ENST00000459107 95 ntBASIC0.78□□□□□ -2.28
SEMA4AQ9H3S1 uc_338.10-201ENST00000621872 182 ntBASIC0.78□□□□□ -2.28
SEMA4AQ9H3S1 MIR6866-201ENST00000638146 69 ntBASIC0.78□□□□□ -2.28
SEMA4AQ9H3S1 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.78□□□□□ -2.28
SEMA4AQ9H3S1 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
SEMA4AQ9H3S1 RNU6-829P-201ENST00000363700 112 ntBASIC0.77□□□□□ -2.29
SEMA4AQ9H3S1 RNU6-1246P-201ENST00000391064 107 ntBASIC0.77□□□□□ -2.29
SEMA4AQ9H3S1 AC079150.2-201ENST00000443733 78 ntBASIC0.77□□□□□ -2.29
SEMA4AQ9H3S1 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.77□□□□□ -2.29
SEMA4AQ9H3S1 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
SEMA4AQ9H3S1 RNA5SP215-201ENST00000363440 122 ntBASIC0.76□□□□□ -2.29
SEMA4AQ9H3S1 RNU4-37P-201ENST00000410214 84 ntBASIC0.76□□□□□ -2.29
SEMA4AQ9H3S1 U6.96-201ENST00000636425 70 ntBASIC0.76□□□□□ -2.29
SEMA4AQ9H3S1 SNORA9.1-201ENST00000362412 131 ntBASIC0.75□□□□□ -2.29
SEMA4AQ9H3S1 RNU6-987P-201ENST00000384759 104 ntBASIC0.75□□□□□ -2.29
SEMA4AQ9H3S1 MIR517B-201ENST00000385102 67 ntBASIC0.75□□□□□ -2.29
SEMA4AQ9H3S1 MIR516B1-201ENST00000385211 90 ntBASIC0.75□□□□□ -2.29
SEMA4AQ9H3S1 U4.4-201ENST00000620626 117 ntBASIC0.75□□□□□ -2.29
SEMA4AQ9H3S1 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
SEMA4AQ9H3S1 RNU6-446P-201ENST00000362827 106 ntBASIC0.74□□□□□ -2.29
SEMA4AQ9H3S1 RNU6-669P-201ENST00000365575 107 ntBASIC0.74□□□□□ -2.29
SEMA4AQ9H3S1 RNU7-174P-201ENST00000516248 59 ntBASIC0.74□□□□□ -2.29
SEMA4AQ9H3S1 RNU6-229P-201ENST00000516614 102 ntBASIC0.74□□□□□ -2.29
SEMA4AQ9H3S1 CYP3A54P-201ENST00000566950 75 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 215.7 ms