Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MIR3133-201ENST00000583157 78 ntBASIC-1.34□□□□□ -2.62
CHMP4AQ9BY43 MIR4773-1-201ENST00000637203 78 ntBASIC-1.34□□□□□ -2.62
CHMP4AQ9BY43 RNU6-382P-201ENST00000365181 106 ntBASIC-1.35□□□□□ -2.63
CHMP4AQ9BY43 RNU6-209P-201ENST00000384118 107 ntBASIC-1.35□□□□□ -2.63
CHMP4AQ9BY43 RNU6-592P-201ENST00000411333 103 ntBASIC-1.35□□□□□ -2.63
CHMP4AQ9BY43 AC022137.1-201ENST00000483735 151 ntBASIC-1.35□□□□□ -2.63
CHMP4AQ9BY43 MIR6738-201ENST00000619620 64 ntBASIC-1.35□□□□□ -2.63
CHMP4AQ9BY43 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.36□□□□□ -2.63
CHMP4AQ9BY43 AP000533.3-201ENST00000447704 118 ntBASIC-1.36□□□□□ -2.63
CHMP4AQ9BY43 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1.36□□□□□ -2.63
CHMP4AQ9BY43 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.37□□□□□ -2.63
CHMP4AQ9BY43 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.37□□□□□ -2.63
CHMP4AQ9BY43 Y_RNA.703-201ENST00000516846 111 ntBASIC-1.37□□□□□ -2.63
CHMP4AQ9BY43 AC026421.1-201ENST00000519101 163 ntBASIC-1.37□□□□□ -2.63
CHMP4AQ9BY43 MIR517B-201ENST00000385102 67 ntBASIC-1.38□□□□□ -2.63
CHMP4AQ9BY43 MIR1302-5-201ENST00000408164 150 ntBASIC-1.38□□□□□ -2.63
CHMP4AQ9BY43 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.38□□□□□ -2.63
CHMP4AQ9BY43 RNU6-774P-201ENST00000363238 107 ntBASIC-1.39□□□□□ -2.63
CHMP4AQ9BY43 SNORD115-23-201ENST00000364461 82 ntBASIC-1.39□□□□□ -2.63
CHMP4AQ9BY43 SNORD74.6-201ENST00000364796 70 ntBASIC-1.39□□□□□ -2.63
CHMP4AQ9BY43 RNA5SP147-201ENST00000516493 109 ntBASIC-1.39□□□□□ -2.63
CHMP4AQ9BY43 SNORD116-10-201ENST00000363791 102 ntBASIC-1.4□□□□□ -2.63
CHMP4AQ9BY43 RNU6-10P-201ENST00000384036 107 ntBASIC-1.4□□□□□ -2.63
CHMP4AQ9BY43 MIR196A1-201ENST00000388006 70 ntBASIC-1.4□□□□□ -2.63
CHMP4AQ9BY43 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.4□□□□□ -2.63
CHMP4AQ9BY43 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.41□□□□□ -2.64
CHMP4AQ9BY43 RNU6-260P-201ENST00000384092 107 ntBASIC-1.41□□□□□ -2.64
CHMP4AQ9BY43 RNU6-905P-201ENST00000384434 107 ntBASIC-1.41□□□□□ -2.64
CHMP4AQ9BY43 MIR203A-201ENST00000384836 110 ntBASIC-1.41□□□□□ -2.64
CHMP4AQ9BY43 RNU7-61P-201ENST00000515897 61 ntBASIC-1.41□□□□□ -2.64
CHMP4AQ9BY43 MIR6509-201ENST00000614603 85 ntBASIC-1.41□□□□□ -2.64
CHMP4AQ9BY43 RNU6-824P-201ENST00000363724 104 ntBASIC-1.42□□□□□ -2.64
CHMP4AQ9BY43 RNU6-704P-201ENST00000364162 103 ntBASIC-1.42□□□□□ -2.64
CHMP4AQ9BY43 SNX3P1X-201ENST00000414887 175 ntBASIC-1.42□□□□□ -2.64
CHMP4AQ9BY43 SCARNA17-201ENST00000516183 144 ntBASIC-1.42□□□□□ -2.64
CHMP4AQ9BY43 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.42□□□□□ -2.64
CHMP4AQ9BY43 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.43□□□□□ -2.64
CHMP4AQ9BY43 MIR590-201ENST00000385008 97 ntBASIC-1.43□□□□□ -2.64
CHMP4AQ9BY43 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.43□□□□□ -2.64
CHMP4AQ9BY43 snoU13.17-201ENST00000458802 104 ntBASIC-1.43□□□□□ -2.64
CHMP4AQ9BY43 SNORD18.2-201ENST00000459604 70 ntBASIC-1.43□□□□□ -2.64
CHMP4AQ9BY43 AL691482.2-201ENST00000457453 84 ntBASIC-1.44□□□□□ -2.64
CHMP4AQ9BY43 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.44□□□□□ -2.64
CHMP4AQ9BY43 MIR4796-201ENST00000580742 81 ntBASIC-1.44□□□□□ -2.64
CHMP4AQ9BY43 YWHAEP3-201ENST00000582767 121 ntBASIC-1.44□□□□□ -2.64
CHMP4AQ9BY43 MIR4324-201ENST00000584846 72 ntBASIC-1.44□□□□□ -2.64
CHMP4AQ9BY43 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.45□□□□□ -2.64
CHMP4AQ9BY43 RNU6-208P-201ENST00000362431 107 ntBASIC-1.45□□□□□ -2.64
CHMP4AQ9BY43 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.45□□□□□ -2.64
CHMP4AQ9BY43 SNORA62.4-201ENST00000365504 151 ntBASIC-1.45□□□□□ -2.64
CHMP4AQ9BY43 SNORD114-25-201ENST00000363742 72 ntBASIC-1.46□□□□□ -2.64
CHMP4AQ9BY43 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.46□□□□□ -2.64
CHMP4AQ9BY43 RNU6-274P-201ENST00000459566 107 ntBASIC-1.46□□□□□ -2.64
CHMP4AQ9BY43 Y_RNA.107-201ENST00000363190 121 ntBASIC-1.47□□□□□ -2.64
CHMP4AQ9BY43 MIR124-2-201ENST00000385081 109 ntBASIC-1.47□□□□□ -2.64
CHMP4AQ9BY43 RNU6-162P-201ENST00000516228 103 ntBASIC-1.47□□□□□ -2.64
CHMP4AQ9BY43 AC090617.8-201ENST00000623339 167 ntBASIC-1.47□□□□□ -2.64
CHMP4AQ9BY43 MIR4320-201ENST00000636981 65 ntBASIC-1.47□□□□□ -2.64
CHMP4AQ9BY43 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.48□□□□□ -2.65
CHMP4AQ9BY43 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.48□□□□□ -2.65
CHMP4AQ9BY43 SNORD83B-201ENST00000386745 93 ntBASIC-1.48□□□□□ -2.65
CHMP4AQ9BY43 MIR1236-201ENST00000408340 102 ntBASIC-1.48□□□□□ -2.65
CHMP4AQ9BY43 MIR3668-201ENST00000582138 75 ntBASIC-1.48□□□□□ -2.65
CHMP4AQ9BY43 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.49□□□□□ -2.65
CHMP4AQ9BY43 AL500527.2-201ENST00000454105 95 ntBASIC-1.49□□□□□ -2.65
CHMP4AQ9BY43 RNU6-537P-201ENST00000517277 103 ntBASIC-1.49□□□□□ -2.65
CHMP4AQ9BY43 RNU6-959P-201ENST00000384671 107 ntBASIC-1.5□□□□□ -2.65
CHMP4AQ9BY43 AC008267.6-201ENST00000441664 139 ntBASIC-1.5□□□□□ -2.65
CHMP4AQ9BY43 RNU6-109P-201ENST00000516364 107 ntBASIC-1.5□□□□□ -2.65
CHMP4AQ9BY43 RNU6-184P-201ENST00000516514 107 ntBASIC-1.5□□□□□ -2.65
CHMP4AQ9BY43 MIR3671-201ENST00000580455 88 ntBASIC-1.5□□□□□ -2.65
CHMP4AQ9BY43 MIR3657-201ENST00000584818 117 ntBASIC-1.5□□□□□ -2.65
CHMP4AQ9BY43 AL353803.5-201ENST00000599815 141 ntBASIC-1.5□□□□□ -2.65
CHMP4AQ9BY43 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.5□□□□□ -2.65
CHMP4AQ9BY43 SNORA2.1-201ENST00000363089 137 ntBASIC-1.51□□□□□ -2.65
CHMP4AQ9BY43 SNORA33.1-201ENST00000364957 130 ntBASIC-1.51□□□□□ -2.65
CHMP4AQ9BY43 RNU6-746P-201ENST00000384112 109 ntBASIC-1.52□□□□□ -2.65
CHMP4AQ9BY43 RNU6-554P-201ENST00000410466 106 ntBASIC-1.52□□□□□ -2.65
CHMP4AQ9BY43 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.52□□□□□ -2.65
CHMP4AQ9BY43 U7.3-201ENST00000616123 62 ntBASIC-1.52□□□□□ -2.65
CHMP4AQ9BY43 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.53□□□□□ -2.65
CHMP4AQ9BY43 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.53□□□□□ -2.65
CHMP4AQ9BY43 RNU6-431P-201ENST00000383874 107 ntBASIC-1.54□□□□□ -2.66
CHMP4AQ9BY43 MIR147A-201ENST00000385079 72 ntBASIC-1.54□□□□□ -2.66
CHMP4AQ9BY43 U6.81-201ENST00000612550 106 ntBASIC-1.54□□□□□ -2.66
CHMP4AQ9BY43 Y_RNA.93-201ENST00000363066 109 ntBASIC-1.55□□□□□ -2.66
CHMP4AQ9BY43 RNU6-106P-201ENST00000384405 107 ntBASIC-1.55□□□□□ -2.66
CHMP4AQ9BY43 SNORA19-201ENST00000384737 128 ntBASIC-1.55□□□□□ -2.66
CHMP4AQ9BY43 MIR1255B2-201ENST00000408618 67 ntBASIC-1.55□□□□□ -2.66
CHMP4AQ9BY43 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.56□□□□□ -2.66
CHMP4AQ9BY43 AL450471.1-201ENST00000447509 127 ntBASIC-1.56□□□□□ -2.66
CHMP4AQ9BY43 MIR6129-201ENST00000616087 109 ntBASIC-1.56□□□□□ -2.66
CHMP4AQ9BY43 Y_RNA.818-201ENST00000618813 71 ntBASIC-1.56□□□□□ -2.66
CHMP4AQ9BY43 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.57□□□□□ -2.66
CHMP4AQ9BY43 RNU7-153P-201ENST00000516455 62 ntBASIC-1.57□□□□□ -2.66
CHMP4AQ9BY43 AL365222.1-201ENST00000614661 98 ntBASIC-1.57□□□□□ -2.66
CHMP4AQ9BY43 SNORD64-201ENST00000386683 67 ntBASIC-1.58□□□□□ -2.66
CHMP4AQ9BY43 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.58□□□□□ -2.66
CHMP4AQ9BY43 MIR1468-201ENST00000410600 86 ntBASIC-1.58□□□□□ -2.66
CHMP4AQ9BY43 RNA5SP470-201ENST00000516463 106 ntBASIC-1.58□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms