Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU4-61P-201ENST00000411243 107 ntBASIC-0.52□□□□□ -2.49
CCDC3Q9BQI4 RNU6-162P-201ENST00000516228 103 ntBASIC-0.52□□□□□ -2.49
CCDC3Q9BQI4 SNORA40.13-201ENST00000516379 120 ntBASIC-0.52□□□□□ -2.49
CCDC3Q9BQI4 RNA5SP275-201ENST00000363936 118 ntBASIC-0.53□□□□□ -2.49
CCDC3Q9BQI4 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.53□□□□□ -2.49
CCDC3Q9BQI4 RNU6-973P-201ENST00000364690 107 ntBASIC-0.53□□□□□ -2.49
CCDC3Q9BQI4 RNU6-901P-201ENST00000384593 106 ntBASIC-0.53□□□□□ -2.49
CCDC3Q9BQI4 snoU13.13-201ENST00000458842 104 ntBASIC-0.53□□□□□ -2.49
CCDC3Q9BQI4 Y_RNA.633-201ENST00000459107 95 ntBASIC-0.53□□□□□ -2.49
CCDC3Q9BQI4 AC114755.3-201ENST00000481111 251 ntBASIC-0.53□□□□□ -2.49
CCDC3Q9BQI4 RNU6-919P-201ENST00000516731 104 ntBASIC-0.53□□□□□ -2.49
CCDC3Q9BQI4 U6.81-201ENST00000612550 106 ntBASIC-0.53□□□□□ -2.49
CCDC3Q9BQI4 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.54□□□□□ -2.5
CCDC3Q9BQI4 RNU6-382P-201ENST00000365181 106 ntBASIC-0.54□□□□□ -2.5
CCDC3Q9BQI4 SNORD56B-201ENST00000384713 71 ntBASIC-0.54□□□□□ -2.5
CCDC3Q9BQI4 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.54□□□□□ -2.5
CCDC3Q9BQI4 AC096531.1-201ENST00000419107 107 ntBASIC-0.54□□□□□ -2.5
CCDC3Q9BQI4 snoU13.17-201ENST00000458802 104 ntBASIC-0.54□□□□□ -2.5
CCDC3Q9BQI4 AC093726.3-201ENST00000637588 150 ntBASIC-0.54□□□□□ -2.5
CCDC3Q9BQI4 MIR450A1-201ENST00000362262 91 ntBASIC-0.55□□□□□ -2.5
CCDC3Q9BQI4 RNU6-824P-201ENST00000363724 104 ntBASIC-0.55□□□□□ -2.5
CCDC3Q9BQI4 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.55□□□□□ -2.5
CCDC3Q9BQI4 MIR519C-201ENST00000385053 87 ntBASIC-0.55□□□□□ -2.5
CCDC3Q9BQI4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.55□□□□□ -2.5
CCDC3Q9BQI4 RNU6-592P-201ENST00000411333 103 ntBASIC-0.55□□□□□ -2.5
CCDC3Q9BQI4 snoU13.19-201ENST00000459148 104 ntBASIC-0.55□□□□□ -2.5
CCDC3Q9BQI4 MIR4432-201ENST00000581823 84 ntBASIC-0.55□□□□□ -2.5
CCDC3Q9BQI4 uc_338.36-201ENST00000622331 158 ntBASIC-0.55□□□□□ -2.5
CCDC3Q9BQI4 RNU6-633P-201ENST00000362612 103 ntBASIC-0.56□□□□□ -2.5
CCDC3Q9BQI4 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.56□□□□□ -2.5
CCDC3Q9BQI4 SNORD114-15-201ENST00000364687 72 ntBASIC-0.56□□□□□ -2.5
CCDC3Q9BQI4 RNU6-260P-201ENST00000384092 107 ntBASIC-0.56□□□□□ -2.5
CCDC3Q9BQI4 RNU6-284P-201ENST00000411105 106 ntBASIC-0.56□□□□□ -2.5
CCDC3Q9BQI4 RNA5SP169-201ENST00000517268 117 ntBASIC-0.56□□□□□ -2.5
CCDC3Q9BQI4 MIR548AI-201ENST00000579940 88 ntBASIC-0.56□□□□□ -2.5
CCDC3Q9BQI4 MIR4280-201ENST00000582178 76 ntBASIC-0.56□□□□□ -2.5
CCDC3Q9BQI4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.56□□□□□ -2.5
CCDC3Q9BQI4 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.57□□□□□ -2.5
CCDC3Q9BQI4 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.57□□□□□ -2.5
CCDC3Q9BQI4 SNORA13-201ENST00000458790 133 ntBASIC-0.57□□□□□ -2.5
CCDC3Q9BQI4 MIR6773-201ENST00000612812 74 ntBASIC-0.57□□□□□ -2.5
CCDC3Q9BQI4 RNU6-32P-201ENST00000383948 107 ntBASIC-0.58□□□□□ -2.5
CCDC3Q9BQI4 RNU6-13P-201ENST00000384248 107 ntBASIC-0.58□□□□□ -2.5
CCDC3Q9BQI4 RNU6-12P-201ENST00000384604 107 ntBASIC-0.58□□□□□ -2.5
CCDC3Q9BQI4 RNU6-41P-201ENST00000384741 107 ntBASIC-0.58□□□□□ -2.5
CCDC3Q9BQI4 RNU6-752P-201ENST00000516376 102 ntBASIC-0.58□□□□□ -2.5
CCDC3Q9BQI4 RNU6-990P-201ENST00000364385 104 ntBASIC-0.59□□□□□ -2.5
CCDC3Q9BQI4 Y_RNA.348-201ENST00000365403 103 ntBASIC-0.59□□□□□ -2.5
CCDC3Q9BQI4 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.59□□□□□ -2.5
CCDC3Q9BQI4 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.59□□□□□ -2.5
CCDC3Q9BQI4 SNORD20-201ENST00000384550 80 ntBASIC-0.59□□□□□ -2.5
CCDC3Q9BQI4 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.59□□□□□ -2.5
CCDC3Q9BQI4 RNU6-274P-201ENST00000459566 107 ntBASIC-0.59□□□□□ -2.5
CCDC3Q9BQI4 MIR6851-201ENST00000617060 67 ntBASIC-0.59□□□□□ -2.5
CCDC3Q9BQI4 MALAT1.1-201ENST00000618249 95 ntBASIC-0.59□□□□□ -2.5
CCDC3Q9BQI4 SNORA2.1-201ENST00000363089 137 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 SNORD116-22-201ENST00000384430 92 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 RNU6-337P-201ENST00000391243 106 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 RPS29P8-201ENST00000445109 171 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 AC021146.9-201ENST00000512503 156 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 RNU7-153P-201ENST00000516455 62 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 SNORD38.3-201ENST00000516599 73 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 MIR4668-201ENST00000582284 70 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 AL391099.1-201ENST00000624635 187 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 MIR4773-1-201ENST00000637203 78 ntBASIC-0.6□□□□□ -2.51
CCDC3Q9BQI4 SNORD114-14-201ENST00000362723 75 ntBASIC-0.61□□□□□ -2.51
CCDC3Q9BQI4 SNORD115-27-201ENST00000364430 82 ntBASIC-0.61□□□□□ -2.51
CCDC3Q9BQI4 Y_RNA.291-201ENST00000364886 113 ntBASIC-0.61□□□□□ -2.51
CCDC3Q9BQI4 MIRLET7B-201ENST00000385140 83 ntBASIC-0.61□□□□□ -2.51
CCDC3Q9BQI4 MIR204-201ENST00000385200 110 ntBASIC-0.61□□□□□ -2.51
CCDC3Q9BQI4 AL450471.1-201ENST00000447509 127 ntBASIC-0.61□□□□□ -2.51
CCDC3Q9BQI4 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.61□□□□□ -2.51
CCDC3Q9BQI4 MIR548AZ-201ENST00000616567 95 ntBASIC-0.61□□□□□ -2.51
CCDC3Q9BQI4 SNORD115-23-201ENST00000364461 82 ntBASIC-0.62□□□□□ -2.51
CCDC3Q9BQI4 RNU6-497P-201ENST00000365316 104 ntBASIC-0.62□□□□□ -2.51
CCDC3Q9BQI4 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.62□□□□□ -2.51
CCDC3Q9BQI4 YWHAEP3-201ENST00000582767 121 ntBASIC-0.62□□□□□ -2.51
CCDC3Q9BQI4 MIR5704-201ENST00000584029 77 ntBASIC-0.62□□□□□ -2.51
CCDC3Q9BQI4 MIR6509-201ENST00000614603 85 ntBASIC-0.62□□□□□ -2.51
CCDC3Q9BQI4 RNU6-624P-201ENST00000363411 107 ntBASIC-0.63□□□□□ -2.51
CCDC3Q9BQI4 SNORD115-37-201ENST00000363768 82 ntBASIC-0.63□□□□□ -2.51
CCDC3Q9BQI4 RNU6-681P-201ENST00000364012 104 ntBASIC-0.63□□□□□ -2.51
CCDC3Q9BQI4 RNU6-147P-201ENST00000383983 107 ntBASIC-0.63□□□□□ -2.51
CCDC3Q9BQI4 AL035461.1-201ENST00000421490 332 ntBASIC-0.63□□□□□ -2.51
CCDC3Q9BQI4 AL691482.2-201ENST00000457453 84 ntBASIC-0.63□□□□□ -2.51
CCDC3Q9BQI4 RNU6-208P-201ENST00000362431 107 ntBASIC-0.64□□□□□ -2.51
CCDC3Q9BQI4 RNU6-340P-201ENST00000364005 107 ntBASIC-0.64□□□□□ -2.51
CCDC3Q9BQI4 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.64□□□□□ -2.51
CCDC3Q9BQI4 RNU6-30P-201ENST00000384561 107 ntBASIC-0.64□□□□□ -2.51
CCDC3Q9BQI4 MIR224-201ENST00000384889 81 ntBASIC-0.64□□□□□ -2.51
CCDC3Q9BQI4 SNORD77.2-201ENST00000391045 68 ntBASIC-0.64□□□□□ -2.51
CCDC3Q9BQI4 SNORA3B-201ENST00000391305 131 ntBASIC-0.64□□□□□ -2.51
CCDC3Q9BQI4 AC093729.1-201ENST00000513074 128 ntBASIC-0.64□□□□□ -2.51
CCDC3Q9BQI4 MIR3657-201ENST00000584818 117 ntBASIC-0.64□□□□□ -2.51
CCDC3Q9BQI4 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.65□□□□□ -2.51
CCDC3Q9BQI4 MIR4436A-201ENST00000585278 85 ntBASIC-0.65□□□□□ -2.51
CCDC3Q9BQI4 RNU6-640P-201ENST00000363693 105 ntBASIC-0.66□□□□□ -2.52
CCDC3Q9BQI4 RNU6-219P-201ENST00000364728 107 ntBASIC-0.66□□□□□ -2.52
CCDC3Q9BQI4 SNORD74.6-201ENST00000364796 70 ntBASIC-0.66□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 342 ms