Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 MIR548X-201ENST00000580069 75 ntBASIC1.77□□□□□ -2.13
LRCH3Q96II8 MIR6788-201ENST00000618842 66 ntBASIC1.77□□□□□ -2.13
LRCH3Q96II8 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
LRCH3Q96II8 SNORD114-27-201ENST00000363766 70 ntBASIC1.76□□□□□ -2.13
LRCH3Q96II8 MIR516B1-201ENST00000385211 90 ntBASIC1.76□□□□□ -2.13
LRCH3Q96II8 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.76□□□□□ -2.13
LRCH3Q96II8 MIR548J-201ENST00000408833 112 ntBASIC1.76□□□□□ -2.13
LRCH3Q96II8 MIR4419B-201ENST00000577260 68 ntBASIC1.76□□□□□ -2.13
LRCH3Q96II8 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.76□□□□□ -2.13
LRCH3Q96II8 Y_RNA.68-201ENST00000362881 102 ntBASIC1.75□□□□□ -2.13
LRCH3Q96II8 Y_RNA.282-201ENST00000364793 102 ntBASIC1.75□□□□□ -2.13
LRCH3Q96II8 SNORA25-201ENST00000384384 134 ntBASIC1.75□□□□□ -2.13
LRCH3Q96II8 FABP5P4-201ENST00000437203 171 ntBASIC1.75□□□□□ -2.13
LRCH3Q96II8 RNA5SP227-201ENST00000516184 113 ntBASIC1.75□□□□□ -2.13
LRCH3Q96II8 SNORA40B-201ENST00000385573 128 ntBASIC1.74□□□□□ -2.13
LRCH3Q96II8 SNORD110-201ENST00000408189 75 ntBASIC1.74□□□□□ -2.13
LRCH3Q96II8 AC012493.3-201ENST00000604494 112 ntBASIC1.74□□□□□ -2.13
LRCH3Q96II8 MIR527-201ENST00000385244 85 ntBASIC1.73□□□□□ -2.13
LRCH3Q96II8 MIR1323-201ENST00000408090 73 ntBASIC1.73□□□□□ -2.13
LRCH3Q96II8 MIR6078-201ENST00000611069 100 ntBASIC1.73□□□□□ -2.13
LRCH3Q96II8 RNU6-810P-201ENST00000364001 107 ntBASIC1.72□□□□□ -2.13
LRCH3Q96II8 RN7SL793P-201ENST00000583259 296 ntBASIC1.72□□□□□ -2.13
LRCH3Q96II8 RNA5SP327-201ENST00000362494 101 ntBASIC1.71□□□□□ -2.14
LRCH3Q96II8 SNORA36.1-201ENST00000363424 132 ntBASIC1.71□□□□□ -2.14
LRCH3Q96II8 MIR519A2-201ENST00000384990 87 ntBASIC1.71□□□□□ -2.14
LRCH3Q96II8 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
LRCH3Q96II8 MIR1255B2-201ENST00000408618 67 ntBASIC1.7□□□□□ -2.14
LRCH3Q96II8 AC243829.3-201ENST00000622177 108 ntBASIC1.7□□□□□ -2.14
LRCH3Q96II8 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.69□□□□□ -2.14
LRCH3Q96II8 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.69□□□□□ -2.14
LRCH3Q96II8 AL354695.1-201ENST00000427935 228 ntBASIC1.69□□□□□ -2.14
LRCH3Q96II8 MIR3122-201ENST00000577243 73 ntBASIC1.69□□□□□ -2.14
LRCH3Q96II8 AC243829.6-201ENST00000612652 106 ntBASIC1.69□□□□□ -2.14
LRCH3Q96II8 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
LRCH3Q96II8 SNORD1B-201ENST00000363091 84 ntBASIC1.68□□□□□ -2.14
LRCH3Q96II8 RNA5SP363-201ENST00000365072 115 ntBASIC1.68□□□□□ -2.14
LRCH3Q96II8 RNU6-172P-201ENST00000411000 93 ntBASIC1.68□□□□□ -2.14
LRCH3Q96II8 MIR548AG1-201ENST00000579932 66 ntBASIC1.68□□□□□ -2.14
LRCH3Q96II8 Y_RNA.433-201ENST00000384089 102 ntBASIC1.67□□□□□ -2.14
LRCH3Q96II8 RNU6-246P-201ENST00000384702 107 ntBASIC1.67□□□□□ -2.14
LRCH3Q96II8 MIR545-201ENST00000385085 106 ntBASIC1.67□□□□□ -2.14
LRCH3Q96II8 RNA5SP476-201ENST00000516613 103 ntBASIC1.67□□□□□ -2.14
LRCH3Q96II8 RNA5SP268-201ENST00000516828 124 ntBASIC1.67□□□□□ -2.14
LRCH3Q96II8 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.67□□□□□ -2.14
LRCH3Q96II8 SNORA70.25-201ENST00000612741 95 ntBASIC1.67□□□□□ -2.14
LRCH3Q96II8 SNORD124-201ENST00000459577 104 ntBASIC1.66□□□□□ -2.14
LRCH3Q96II8 SNORA31.24-201ENST00000517232 57 ntBASIC1.66□□□□□ -2.14
LRCH3Q96II8 MIR7107-201ENST00000611489 80 ntBASIC1.66□□□□□ -2.14
LRCH3Q96II8 RNU6-838P-201ENST00000363399 108 ntBASIC1.65□□□□□ -2.15
LRCH3Q96II8 MIR19B1-201ENST00000384829 87 ntBASIC1.65□□□□□ -2.15
LRCH3Q96II8 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.65□□□□□ -2.15
LRCH3Q96II8 MIR6767-201ENST00000637302 66 ntBASIC1.65□□□□□ -2.15
LRCH3Q96II8 MIR18A-201ENST00000362310 71 ntBASIC1.64□□□□□ -2.15
LRCH3Q96II8 MIR216A-201ENST00000385063 110 ntBASIC1.63□□□□□ -2.15
LRCH3Q96II8 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
LRCH3Q96II8 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.62□□□□□ -2.15
LRCH3Q96II8 MIR4752-201ENST00000579672 72 ntBASIC1.62□□□□□ -2.15
LRCH3Q96II8 MIR4490-201ENST00000582647 84 ntBASIC1.62□□□□□ -2.15
LRCH3Q96II8 Y_RNA.109-201ENST00000363215 102 ntBASIC1.61□□□□□ -2.15
LRCH3Q96II8 MIR200A-201ENST00000384875 90 ntBASIC1.61□□□□□ -2.15
LRCH3Q96II8 HMGN2P22-201ENST00000427588 175 ntBASIC1.61□□□□□ -2.15
LRCH3Q96II8 AC244090.1-201ENST00000441884 93 ntBASIC1.61□□□□□ -2.15
LRCH3Q96II8 AC025627.3-201ENST00000582078 182 ntBASIC1.61□□□□□ -2.15
LRCH3Q96II8 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
LRCH3Q96II8 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
LRCH3Q96II8 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.6□□□□□ -2.15
LRCH3Q96II8 RNA5SP94-201ENST00000516917 108 ntBASIC1.6□□□□□ -2.15
LRCH3Q96II8 MIR20A-201ENST00000362279 71 ntBASIC1.59□□□□□ -2.15
LRCH3Q96II8 RNU6-337P-201ENST00000391243 106 ntBASIC1.59□□□□□ -2.15
LRCH3Q96II8 AC011195.1-201ENST00000578177 177 ntBASIC1.59□□□□□ -2.15
LRCH3Q96II8 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.59□□□□□ -2.16
LRCH3Q96II8 RNU7-154P-201ENST00000516194 62 ntBASIC1.58□□□□□ -2.16
LRCH3Q96II8 RNU6-419P-201ENST00000517030 63 ntBASIC1.58□□□□□ -2.16
LRCH3Q96II8 SNORD115-25-201ENST00000362619 82 ntBASIC1.57□□□□□ -2.16
LRCH3Q96II8 HAR1A.1-201ENST00000459583 118 ntBASIC1.57□□□□□ -2.16
LRCH3Q96II8 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
LRCH3Q96II8 RNA5SP457-201ENST00000363657 124 ntBASIC1.56□□□□□ -2.16
LRCH3Q96II8 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
LRCH3Q96II8 SNORD99-201ENST00000408612 74 ntBASIC1.56□□□□□ -2.16
LRCH3Q96II8 MIR6773-201ENST00000612812 74 ntBASIC1.56□□□□□ -2.16
LRCH3Q96II8 RNU1-29P-201ENST00000606574 126 ntBASIC1.55□□□□□ -2.16
LRCH3Q96II8 RNU6-247P-201ENST00000362636 107 ntBASIC1.54□□□□□ -2.16
LRCH3Q96II8 RNU6-458P-201ENST00000384179 107 ntBASIC1.54□□□□□ -2.16
LRCH3Q96II8 RNA5SP255-201ENST00000516370 107 ntBASIC1.54□□□□□ -2.16
LRCH3Q96II8 MIR5000-201ENST00000577717 103 ntBASIC1.54□□□□□ -2.16
LRCH3Q96II8 U6.58-201ENST00000613107 107 ntBASIC1.54□□□□□ -2.16
LRCH3Q96II8 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
LRCH3Q96II8 Y_RNA.115-201ENST00000363272 98 ntBASIC1.53□□□□□ -2.16
LRCH3Q96II8 SNORA49-201ENST00000386157 136 ntBASIC1.53□□□□□ -2.16
LRCH3Q96II8 MIR429-201ENST00000362106 83 ntBASIC1.52□□□□□ -2.17
LRCH3Q96II8 RNU6-924P-201ENST00000362926 108 ntBASIC1.52□□□□□ -2.17
LRCH3Q96II8 RNU4-45P-201ENST00000365469 141 ntBASIC1.52□□□□□ -2.17
LRCH3Q96II8 MIR579-201ENST00000385221 98 ntBASIC1.51□□□□□ -2.17
LRCH3Q96II8 SNORD114-24-201ENST00000365029 72 ntBASIC1.5□□□□□ -2.17
LRCH3Q96II8 RNU6-997P-201ENST00000384725 107 ntBASIC1.5□□□□□ -2.17
LRCH3Q96II8 MIR193B-201ENST00000384907 83 ntBASIC1.5□□□□□ -2.17
LRCH3Q96II8 MIR320A-201ENST00000385302 82 ntBASIC1.5□□□□□ -2.17
LRCH3Q96II8 MIR1304-201ENST00000408243 91 ntBASIC1.5□□□□□ -2.17
LRCH3Q96II8 SNORD2-201ENST00000459163 69 ntBASIC1.5□□□□□ -2.17
LRCH3Q96II8 RNY1P8-201ENST00000383970 114 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 200.5 ms