Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC012531.4-201ENST00000616509 177 ntBASIC-1.04□□□□□ -2.58
FOXA1P55317 MIR382-201ENST00000637119 76 ntBASIC-1.04□□□□□ -2.58
FOXA1P55317 MIR4773-1-201ENST00000637203 78 ntBASIC-1.04□□□□□ -2.58
FOXA1P55317 MIR3914-2-201ENST00000637339 95 ntBASIC-1.04□□□□□ -2.58
FOXA1P55317 RNU6-824P-201ENST00000363724 104 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 SNORA33.1-201ENST00000364957 130 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 MIR203A-201ENST00000384836 110 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 SNORD33.1-201ENST00000516213 88 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 MIR4723-201ENST00000585070 81 ntBASIC-1.05□□□□□ -2.58
FOXA1P55317 RNU5F-1-201ENST00000362507 117 ntBASIC-1.06□□□□□ -2.58
FOXA1P55317 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.06□□□□□ -2.58
FOXA1P55317 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.06□□□□□ -2.58
FOXA1P55317 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.06□□□□□ -2.58
FOXA1P55317 SCARNA18B-201ENST00000458806 135 ntBASIC-1.06□□□□□ -2.58
FOXA1P55317 RNU7-200P-201ENST00000516105 62 ntBASIC-1.06□□□□□ -2.58
FOXA1P55317 MIR6509-201ENST00000614603 85 ntBASIC-1.06□□□□□ -2.58
FOXA1P55317 AL445584.3-201ENST00000617173 78 ntBASIC-1.06□□□□□ -2.58
FOXA1P55317 MIR6888-201ENST00000621977 67 ntBASIC-1.06□□□□□ -2.58
FOXA1P55317 SNORA2.1-201ENST00000363089 137 ntBASIC-1.07□□□□□ -2.58
FOXA1P55317 MIR548A3-201ENST00000385297 97 ntBASIC-1.07□□□□□ -2.58
FOXA1P55317 RNU6-971P-201ENST00000516920 106 ntBASIC-1.07□□□□□ -2.58
FOXA1P55317 snoU83B.1-201ENST00000517136 88 ntBASIC-1.07□□□□□ -2.58
FOXA1P55317 RNU6-24P-201ENST00000384440 107 ntBASIC-1.08□□□□□ -2.58
FOXA1P55317 MIR1255B2-201ENST00000408618 67 ntBASIC-1.08□□□□□ -2.58
FOXA1P55317 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.08□□□□□ -2.58
FOXA1P55317 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.08□□□□□ -2.58
FOXA1P55317 MIR3657-201ENST00000584818 117 ntBASIC-1.08□□□□□ -2.58
FOXA1P55317 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.09□□□□□ -2.58
FOXA1P55317 SNORD58A-201ENST00000383875 65 ntBASIC-1.09□□□□□ -2.58
FOXA1P55317 RNU6-972P-201ENST00000391208 107 ntBASIC-1.09□□□□□ -2.58
FOXA1P55317 AL691482.2-201ENST00000457453 84 ntBASIC-1.09□□□□□ -2.58
FOXA1P55317 U6.95-201ENST00000636931 70 ntBASIC-1.09□□□□□ -2.58
FOXA1P55317 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.1□□□□□ -2.59
FOXA1P55317 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.1□□□□□ -2.59
FOXA1P55317 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.1□□□□□ -2.59
FOXA1P55317 RNU6-887P-201ENST00000410660 100 ntBASIC-1.1□□□□□ -2.59
FOXA1P55317 CYP3A54P-201ENST00000566950 75 ntBASIC-1.1□□□□□ -2.59
FOXA1P55317 RNU6-80P-201ENST00000384195 107 ntBASIC-1.11□□□□□ -2.59
FOXA1P55317 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.11□□□□□ -2.59
FOXA1P55317 SNORA19.1-201ENST00000410656 129 ntBASIC-1.11□□□□□ -2.59
FOXA1P55317 SCARNA23-201ENST00000516060 130 ntBASIC-1.11□□□□□ -2.59
FOXA1P55317 AC026421.1-201ENST00000519101 163 ntBASIC-1.11□□□□□ -2.59
FOXA1P55317 MIR4306-201ENST00000583390 91 ntBASIC-1.11□□□□□ -2.59
FOXA1P55317 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.11□□□□□ -2.59
FOXA1P55317 AC099654.10-201ENST00000640395 161 ntBASIC-1.11□□□□□ -2.59
FOXA1P55317 RNU6-346P-201ENST00000516288 111 ntBASIC-1.12□□□□□ -2.59
FOXA1P55317 MIR3165-201ENST00000579874 75 ntBASIC-1.12□□□□□ -2.59
FOXA1P55317 U6.81-201ENST00000612550 106 ntBASIC-1.12□□□□□ -2.59
FOXA1P55317 RNU6-924P-201ENST00000362926 108 ntBASIC-1.13□□□□□ -2.59
FOXA1P55317 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.13□□□□□ -2.59
FOXA1P55317 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.13□□□□□ -2.59
FOXA1P55317 RNU6-659P-201ENST00000516454 104 ntBASIC-1.13□□□□□ -2.59
FOXA1P55317 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.13□□□□□ -2.59
FOXA1P55317 MIR4796-201ENST00000580742 81 ntBASIC-1.13□□□□□ -2.59
FOXA1P55317 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.13□□□□□ -2.59
FOXA1P55317 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.14□□□□□ -2.59
FOXA1P55317 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.14□□□□□ -2.59
FOXA1P55317 RNU6-904P-201ENST00000516206 101 ntBASIC-1.14□□□□□ -2.59
FOXA1P55317 MIR4719-201ENST00000585233 84 ntBASIC-1.14□□□□□ -2.59
FOXA1P55317 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.14□□□□□ -2.59
FOXA1P55317 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.15□□□□□ -2.59
FOXA1P55317 SNORD116-10-201ENST00000363791 102 ntBASIC-1.15□□□□□ -2.59
FOXA1P55317 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.15□□□□□ -2.59
FOXA1P55317 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.15□□□□□ -2.59
FOXA1P55317 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.15□□□□□ -2.59
FOXA1P55317 MIR521-2-201ENST00000384818 87 ntBASIC-1.15□□□□□ -2.59
FOXA1P55317 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.15□□□□□ -2.59
FOXA1P55317 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.15□□□□□ -2.59
FOXA1P55317 MIR3115-201ENST00000577915 68 ntBASIC-1.15□□□□□ -2.59
FOXA1P55317 RNA5SP192-201ENST00000364404 120 ntBASIC-1.16□□□□□ -2.6
FOXA1P55317 RNU6-880P-201ENST00000384526 107 ntBASIC-1.16□□□□□ -2.6
FOXA1P55317 RNU6-412P-201ENST00000516434 106 ntBASIC-1.16□□□□□ -2.6
FOXA1P55317 RNY1P5-201ENST00000383890 115 ntBASIC-1.17□□□□□ -2.6
FOXA1P55317 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.17□□□□□ -2.6
FOXA1P55317 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.17□□□□□ -2.6
FOXA1P55317 RNU7-154P-201ENST00000516194 62 ntBASIC-1.17□□□□□ -2.6
FOXA1P55317 RNU6-255P-201ENST00000516957 105 ntBASIC-1.17□□□□□ -2.6
FOXA1P55317 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.17□□□□□ -2.6
FOXA1P55317 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.17□□□□□ -2.6
FOXA1P55317 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.18□□□□□ -2.6
FOXA1P55317 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.18□□□□□ -2.6
FOXA1P55317 SNORD116-21-201ENST00000384507 92 ntBASIC-1.18□□□□□ -2.6
FOXA1P55317 SNORA26.4-201ENST00000391188 123 ntBASIC-1.18□□□□□ -2.6
FOXA1P55317 MIR1236-201ENST00000408340 102 ntBASIC-1.18□□□□□ -2.6
FOXA1P55317 SNORD63.1-201ENST00000516178 80 ntBASIC-1.18□□□□□ -2.6
FOXA1P55317 SNORD115-33-201ENST00000363723 82 ntBASIC-1.19□□□□□ -2.6
FOXA1P55317 RNU6-746P-201ENST00000384112 109 ntBASIC-1.19□□□□□ -2.6
FOXA1P55317 MIR519A2-201ENST00000384990 87 ntBASIC-1.19□□□□□ -2.6
FOXA1P55317 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.19□□□□□ -2.6
FOXA1P55317 RNU7-61P-201ENST00000515897 61 ntBASIC-1.19□□□□□ -2.6
FOXA1P55317 RNU6-537P-201ENST00000517277 103 ntBASIC-1.19□□□□□ -2.6
FOXA1P55317 MIR6739-201ENST00000622461 75 ntBASIC-1.19□□□□□ -2.6
FOXA1P55317 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.2□□□□□ -2.6
FOXA1P55317 RNU6-907P-201ENST00000390924 102 ntBASIC-1.2□□□□□ -2.6
FOXA1P55317 RNU6-518P-201ENST00000516056 96 ntBASIC-1.2□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms