Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 SNORD42B-201ENST00000458893 67 ntBASIC0.49□□□□□ -2.33
TTC3P53804 RNU4-54P-201ENST00000516428 129 ntBASIC0.49□□□□□ -2.33
TTC3P53804 MIR548AD-201ENST00000584780 82 ntBASIC0.49□□□□□ -2.33
TTC3P53804 U6.81-201ENST00000612550 106 ntBASIC0.49□□□□□ -2.33
TTC3P53804 Y_RNA.115-201ENST00000363272 98 ntBASIC0.48□□□□□ -2.33
TTC3P53804 AC006210.1-201ENST00000424882 111 ntBASIC0.48□□□□□ -2.33
TTC3P53804 AC069271.1-201ENST00000445577 156 ntBASIC0.48□□□□□ -2.33
TTC3P53804 MIR3134-201ENST00000579433 74 ntBASIC0.48□□□□□ -2.33
TTC3P53804 MIR4473-201ENST00000583731 91 ntBASIC0.48□□□□□ -2.33
TTC3P53804 RNU6-590P-201ENST00000365039 107 ntBASIC0.47□□□□□ -2.33
TTC3P53804 RNU6-411P-201ENST00000384451 107 ntBASIC0.47□□□□□ -2.33
TTC3P53804 RNU6-523P-201ENST00000516304 54 ntBASIC0.47□□□□□ -2.33
TTC3P53804 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.47□□□□□ -2.33
TTC3P53804 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.46□□□□□ -2.34
TTC3P53804 RNU6-154P-201ENST00000384306 106 ntBASIC0.46□□□□□ -2.34
TTC3P53804 MIR501-201ENST00000390204 84 ntBASIC0.46□□□□□ -2.34
TTC3P53804 MIR4677-201ENST00000584153 80 ntBASIC0.46□□□□□ -2.34
TTC3P53804 RNU6-663P-201ENST00000391105 106 ntBASIC0.45□□□□□ -2.34
TTC3P53804 snoU13.13-201ENST00000458842 104 ntBASIC0.45□□□□□ -2.34
TTC3P53804 uc_338.17-201ENST00000619633 179 ntBASIC0.45□□□□□ -2.34
TTC3P53804 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
TTC3P53804 RNU6-1039P-201ENST00000383931 107 ntBASIC0.45□□□□□ -2.34
TTC3P53804 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.45□□□□□ -2.34
TTC3P53804 MIR2909-201ENST00000617113 69 ntBASIC0.44□□□□□ -2.34
TTC3P53804 SNORD44.1-201ENST00000363202 61 ntBASIC0.43□□□□□ -2.34
TTC3P53804 SNORA15B-2-201ENST00000384058 135 ntBASIC0.43□□□□□ -2.34
TTC3P53804 SNORA15B-1-201ENST00000384334 135 ntBASIC0.43□□□□□ -2.34
TTC3P53804 SNORD45A-201ENST00000384512 84 ntBASIC0.43□□□□□ -2.34
TTC3P53804 RNU6-634P-201ENST00000459134 106 ntBASIC0.43□□□□□ -2.34
TTC3P53804 AC023932.2-201ENST00000603176 175 ntBASIC0.43□□□□□ -2.34
TTC3P53804 MIR5087-201ENST00000635826 76 ntBASIC0.43□□□□□ -2.34
TTC3P53804 RNU6-330P-201ENST00000363015 107 ntBASIC0.43□□□□□ -2.34
TTC3P53804 SNORD45.1-201ENST00000363181 77 ntBASIC0.43□□□□□ -2.34
TTC3P53804 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.43□□□□□ -2.34
TTC3P53804 AC139453.2-201ENST00000487255 133 ntBASIC0.43□□□□□ -2.34
TTC3P53804 RNU6-945P-201ENST00000383947 107 ntBASIC0.42□□□□□ -2.34
TTC3P53804 Y_RNA.407-201ENST00000383986 113 ntBASIC0.42□□□□□ -2.34
TTC3P53804 Y_RNA.565-201ENST00000384719 101 ntBASIC0.42□□□□□ -2.34
TTC3P53804 AL157398.1-201ENST00000452981 186 ntBASIC0.42□□□□□ -2.34
TTC3P53804 RNA5SP227-201ENST00000516184 113 ntBASIC0.42□□□□□ -2.34
TTC3P53804 RNA5SP147-201ENST00000516493 109 ntBASIC0.42□□□□□ -2.34
TTC3P53804 RNU6-1162P-201ENST00000384443 104 ntBASIC0.42□□□□□ -2.34
TTC3P53804 AC073261.1-201ENST00000429409 121 ntBASIC0.42□□□□□ -2.34
TTC3P53804 AL109933.3-201ENST00000619095 188 ntBASIC0.42□□□□□ -2.34
TTC3P53804 SNORD114-29-201ENST00000364819 70 ntBASIC0.41□□□□□ -2.34
TTC3P53804 MIR521-2-201ENST00000384818 87 ntBASIC0.41□□□□□ -2.34
TTC3P53804 MIR548E-201ENST00000408287 88 ntBASIC0.41□□□□□ -2.34
TTC3P53804 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.41□□□□□ -2.34
TTC3P53804 RNU6-982P-201ENST00000516216 102 ntBASIC0.4□□□□□ -2.34
TTC3P53804 RNU6-542P-201ENST00000516405 103 ntBASIC0.4□□□□□ -2.34
TTC3P53804 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.4□□□□□ -2.35
TTC3P53804 SNORD115-31-201ENST00000365318 82 ntBASIC0.4□□□□□ -2.35
TTC3P53804 SNORA68.3-201ENST00000515906 83 ntBASIC0.4□□□□□ -2.35
TTC3P53804 RNU6-871P-201ENST00000516122 100 ntBASIC0.4□□□□□ -2.35
TTC3P53804 RNU6-687P-201ENST00000516443 89 ntBASIC0.4□□□□□ -2.35
TTC3P53804 RNA5SP121-201ENST00000516537 101 ntBASIC0.4□□□□□ -2.35
TTC3P53804 MIR4484-201ENST00000582855 83 ntBASIC0.4□□□□□ -2.35
TTC3P53804 MIR3925-201ENST00000584674 77 ntBASIC0.4□□□□□ -2.35
TTC3P53804 RNU6-539P-201ENST00000516665 103 ntBASIC0.39□□□□□ -2.35
TTC3P53804 RNU6-656P-201ENST00000516785 107 ntBASIC0.39□□□□□ -2.35
TTC3P53804 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.39□□□□□ -2.35
TTC3P53804 SNORA2.1-201ENST00000363089 137 ntBASIC0.38□□□□□ -2.35
TTC3P53804 MIR106A-201ENST00000384870 81 ntBASIC0.38□□□□□ -2.35
TTC3P53804 MIR652-201ENST00000385278 98 ntBASIC0.38□□□□□ -2.35
TTC3P53804 MTND4LP1-201ENST00000446263 157 ntBASIC0.38□□□□□ -2.35
TTC3P53804 MIR4315-1-201ENST00000636800 73 ntBASIC0.38□□□□□ -2.35
TTC3P53804 MIR4315-2-201ENST00000640925 73 ntBASIC0.38□□□□□ -2.35
TTC3P53804 SNORA75.1-201ENST00000391130 148 ntBASIC0.38□□□□□ -2.35
TTC3P53804 RNU6-1089P-201ENST00000516473 104 ntBASIC0.38□□□□□ -2.35
TTC3P53804 RNU6-782P-201ENST00000516852 104 ntBASIC0.38□□□□□ -2.35
TTC3P53804 MIR548AE1-201ENST00000583292 70 ntBASIC0.38□□□□□ -2.35
TTC3P53804 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.38□□□□□ -2.35
TTC3P53804 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.37□□□□□ -2.35
TTC3P53804 RNU6-471P-201ENST00000383944 106 ntBASIC0.37□□□□□ -2.35
TTC3P53804 SCARNA11.2-201ENST00000517183 154 ntBASIC0.37□□□□□ -2.35
TTC3P53804 RNA5SP215-201ENST00000363440 122 ntBASIC0.37□□□□□ -2.35
TTC3P53804 RNU6-175P-201ENST00000516896 107 ntBASIC0.37□□□□□ -2.35
TTC3P53804 RNU6-1327P-201ENST00000365302 105 ntBASIC0.36□□□□□ -2.35
TTC3P53804 RNA5SP63-201ENST00000391225 112 ntBASIC0.36□□□□□ -2.35
TTC3P53804 RNU6-1232P-201ENST00000516299 86 ntBASIC0.36□□□□□ -2.35
TTC3P53804 RNU7-188P-201ENST00000517063 64 ntBASIC0.36□□□□□ -2.35
TTC3P53804 SNORA40.17-201ENST00000517256 115 ntBASIC0.36□□□□□ -2.35
TTC3P53804 AC084368.1-201ENST00000620935 65 ntBASIC0.36□□□□□ -2.35
TTC3P53804 RNU6-990P-201ENST00000364385 104 ntBASIC0.35□□□□□ -2.35
TTC3P53804 SNORA50A-201ENST00000384225 134 ntBASIC0.35□□□□□ -2.35
TTC3P53804 MIR643-201ENST00000385267 97 ntBASIC0.35□□□□□ -2.35
TTC3P53804 CYP3A54P-201ENST00000566950 75 ntBASIC0.35□□□□□ -2.35
TTC3P53804 MIRLET7B-201ENST00000385140 83 ntBASIC0.35□□□□□ -2.35
TTC3P53804 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.35□□□□□ -2.35
TTC3P53804 RNA5SP128-201ENST00000365305 116 ntBASIC0.34□□□□□ -2.36
TTC3P53804 AC244090.1-201ENST00000441884 93 ntBASIC0.34□□□□□ -2.36
TTC3P53804 SNORA62.5-201ENST00000516634 120 ntBASIC0.34□□□□□ -2.36
TTC3P53804 RNU6-881P-201ENST00000516813 102 ntBASIC0.34□□□□□ -2.36
TTC3P53804 MIR4752-201ENST00000579672 72 ntBASIC0.34□□□□□ -2.36
TTC3P53804 U7.6-201ENST00000610841 64 ntBASIC0.34□□□□□ -2.36
TTC3P53804 AC090625.1-201ENST00000357130 210 ntBASIC0.33□□□□□ -2.36
TTC3P53804 AC069113.3-201ENST00000521019 150 ntBASIC0.33□□□□□ -2.36
TTC3P53804 MIR6718-201ENST00000616153 80 ntBASIC0.33□□□□□ -2.36
TTC3P53804 RNA5SP98-201ENST00000363158 137 ntBASIC0.33□□□□□ -2.36
TTC3P53804 Y_RNA.633-201ENST00000459107 95 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 236.1 ms