Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR5704-201ENST00000584029 77 ntBASIC-0.75□□□□□ -2.53
CDX1P47902 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.76□□□□□ -2.53
CDX1P47902 SNORA63.6-201ENST00000364921 119 ntBASIC-0.76□□□□□ -2.53
CDX1P47902 AP000533.3-201ENST00000447704 118 ntBASIC-0.76□□□□□ -2.53
CDX1P47902 AC022137.1-201ENST00000483735 151 ntBASIC-0.76□□□□□ -2.53
CDX1P47902 AC026421.1-201ENST00000519101 163 ntBASIC-0.76□□□□□ -2.53
CDX1P47902 uc_338.19-201ENST00000616808 99 ntBASIC-0.76□□□□□ -2.53
CDX1P47902 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.77□□□□□ -2.53
CDX1P47902 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.77□□□□□ -2.53
CDX1P47902 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.77□□□□□ -2.53
CDX1P47902 RNU6-973P-201ENST00000364690 107 ntBASIC-0.77□□□□□ -2.53
CDX1P47902 RNA5SP331-201ENST00000364986 107 ntBASIC-0.77□□□□□ -2.53
CDX1P47902 SNORA24B-201ENST00000384176 131 ntBASIC-0.77□□□□□ -2.53
CDX1P47902 SNORD75.2-201ENST00000408784 58 ntBASIC-0.77□□□□□ -2.53
CDX1P47902 RNA5SP266-201ENST00000410273 108 ntBASIC-0.77□□□□□ -2.53
CDX1P47902 RNU7-61P-201ENST00000515897 61 ntBASIC-0.77□□□□□ -2.53
CDX1P47902 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.78□□□□□ -2.53
CDX1P47902 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.78□□□□□ -2.53
CDX1P47902 RNU7-24P-201ENST00000458867 62 ntBASIC-0.78□□□□□ -2.53
CDX1P47902 MIR4499-201ENST00000584834 69 ntBASIC-0.78□□□□□ -2.53
CDX1P47902 AC006254.2-201ENST00000603259 279 ntBASIC-0.78□□□□□ -2.53
CDX1P47902 MIR6129-201ENST00000616087 109 ntBASIC-0.78□□□□□ -2.53
CDX1P47902 snoR1.1-201ENST00000628177 80 ntBASIC-0.78□□□□□ -2.53
CDX1P47902 RNU5F-1-201ENST00000362507 117 ntBASIC-0.79□□□□□ -2.54
CDX1P47902 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.79□□□□□ -2.54
CDX1P47902 RNY1P9-201ENST00000532431 109 ntBASIC-0.79□□□□□ -2.54
CDX1P47902 MIR8068-201ENST00000618032 68 ntBASIC-0.79□□□□□ -2.54
CDX1P47902 SNORD90-201ENST00000391145 111 ntBASIC-0.8□□□□□ -2.54
CDX1P47902 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.8□□□□□ -2.54
CDX1P47902 RNU6-274P-201ENST00000459566 107 ntBASIC-0.8□□□□□ -2.54
CDX1P47902 SCARNA17-201ENST00000516183 144 ntBASIC-0.8□□□□□ -2.54
CDX1P47902 AC140658.3-201ENST00000567603 271 ntBASIC-0.8□□□□□ -2.54
CDX1P47902 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.8□□□□□ -2.54
CDX1P47902 MIR6854-201ENST00000614935 69 ntBASIC-0.8□□□□□ -2.54
CDX1P47902 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-0.8□□□□□ -2.54
CDX1P47902 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 RNU6-990P-201ENST00000364385 104 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 RNU6-431P-201ENST00000383874 107 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 RNU6-106P-201ENST00000384405 107 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 RNU6-905P-201ENST00000384434 107 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 SNORD64-201ENST00000386683 67 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 RNU6-554P-201ENST00000410466 106 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 RNU6-109P-201ENST00000516364 107 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 RNU6-184P-201ENST00000516514 107 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 RNU6-537P-201ENST00000517277 103 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.81□□□□□ -2.54
CDX1P47902 RNU6-1117P-201ENST00000384525 104 ntBASIC-0.82□□□□□ -2.54
CDX1P47902 SNORD57-201ENST00000448188 72 ntBASIC-0.82□□□□□ -2.54
CDX1P47902 SCARNA18B-201ENST00000458806 135 ntBASIC-0.82□□□□□ -2.54
CDX1P47902 AC021146.9-201ENST00000512503 156 ntBASIC-0.82□□□□□ -2.54
CDX1P47902 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.82□□□□□ -2.54
CDX1P47902 RNU6-162P-201ENST00000516228 103 ntBASIC-0.82□□□□□ -2.54
CDX1P47902 MIR6773-201ENST00000612812 74 ntBASIC-0.82□□□□□ -2.54
CDX1P47902 MIR4773-1-201ENST00000637203 78 ntBASIC-0.82□□□□□ -2.54
CDX1P47902 SNORD74.6-201ENST00000364796 70 ntBASIC-0.83□□□□□ -2.54
CDX1P47902 RNU6-382P-201ENST00000365181 106 ntBASIC-0.83□□□□□ -2.54
CDX1P47902 SNORA19-201ENST00000384737 128 ntBASIC-0.83□□□□□ -2.54
CDX1P47902 MIR147A-201ENST00000385079 72 ntBASIC-0.83□□□□□ -2.54
CDX1P47902 MIR1236-201ENST00000408340 102 ntBASIC-0.83□□□□□ -2.54
CDX1P47902 MIR382-201ENST00000637119 76 ntBASIC-0.83□□□□□ -2.54
CDX1P47902 RNU6-834P-201ENST00000362367 110 ntBASIC-0.84□□□□□ -2.54
CDX1P47902 RNU6-22P-201ENST00000384355 107 ntBASIC-0.84□□□□□ -2.54
CDX1P47902 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.84□□□□□ -2.54
CDX1P47902 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.84□□□□□ -2.54
CDX1P47902 U7.3-201ENST00000616123 62 ntBASIC-0.84□□□□□ -2.54
CDX1P47902 U6.96-201ENST00000636425 70 ntBASIC-0.84□□□□□ -2.54
CDX1P47902 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.85□□□□□ -2.55
CDX1P47902 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.85□□□□□ -2.55
CDX1P47902 MIR587-201ENST00000384845 96 ntBASIC-0.85□□□□□ -2.55
CDX1P47902 MIR378F-201ENST00000578143 78 ntBASIC-0.85□□□□□ -2.55
CDX1P47902 MIR4796-201ENST00000580742 81 ntBASIC-0.85□□□□□ -2.55
CDX1P47902 RNU6-260P-201ENST00000384092 107 ntBASIC-0.86□□□□□ -2.55
CDX1P47902 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.86□□□□□ -2.55
CDX1P47902 RNA5SP470-201ENST00000516463 106 ntBASIC-0.86□□□□□ -2.55
CDX1P47902 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.87□□□□□ -2.55
CDX1P47902 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.87□□□□□ -2.55
CDX1P47902 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.87□□□□□ -2.55
CDX1P47902 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.87□□□□□ -2.55
CDX1P47902 RNU6-592P-201ENST00000411333 103 ntBASIC-0.87□□□□□ -2.55
CDX1P47902 snoU13.17-201ENST00000458802 104 ntBASIC-0.87□□□□□ -2.55
CDX1P47902 SNORD18.2-201ENST00000459604 70 ntBASIC-0.88□□□□□ -2.55
CDX1P47902 RNU6-589P-201ENST00000516485 107 ntBASIC-0.88□□□□□ -2.55
CDX1P47902 MIR6509-201ENST00000614603 85 ntBASIC-0.88□□□□□ -2.55
CDX1P47902 MIR6738-201ENST00000619620 64 ntBASIC-0.88□□□□□ -2.55
CDX1P47902 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.88□□□□□ -2.55
CDX1P47902 RNU6-766P-201ENST00000362478 107 ntBASIC-0.89□□□□□ -2.55
CDX1P47902 RNU6-824P-201ENST00000363724 104 ntBASIC-0.89□□□□□ -2.55
CDX1P47902 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.89□□□□□ -2.55
CDX1P47902 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.89□□□□□ -2.55
CDX1P47902 MIRLET7B-201ENST00000385140 83 ntBASIC-0.89□□□□□ -2.55
CDX1P47902 RNU6-337P-201ENST00000391243 106 ntBASIC-0.89□□□□□ -2.55
CDX1P47902 AL691482.2-201ENST00000457453 84 ntBASIC-0.89□□□□□ -2.55
CDX1P47902 RNU6-313P-201ENST00000516317 112 ntBASIC-0.89□□□□□ -2.55
CDX1P47902 snoU83B.1-201ENST00000517136 88 ntBASIC-0.89□□□□□ -2.55
CDX1P47902 SNORD114-17-201ENST00000364699 75 ntBASIC-0.9□□□□□ -2.55
CDX1P47902 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.9□□□□□ -2.55
CDX1P47902 RNU6-10P-201ENST00000384036 107 ntBASIC-0.9□□□□□ -2.55
CDX1P47902 MIR203A-201ENST00000384836 110 ntBASIC-0.9□□□□□ -2.55
CDX1P47902 SNORD115-23-201ENST00000364461 82 ntBASIC-0.91□□□□□ -2.56
CDX1P47902 RNU6-24P-201ENST00000384440 107 ntBASIC-0.91□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 229.1 ms