Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 U6.95-201ENST00000636931 70 ntBASIC-0.9□□□□□ -2.55
SHMT2P34897 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.91□□□□□ -2.56
SHMT2P34897 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.91□□□□□ -2.56
SHMT2P34897 SNORD114-15-201ENST00000364687 72 ntBASIC-0.91□□□□□ -2.56
SHMT2P34897 SNORD58A-201ENST00000383875 65 ntBASIC-0.91□□□□□ -2.56
SHMT2P34897 RNU6-746P-201ENST00000384112 109 ntBASIC-0.91□□□□□ -2.56
SHMT2P34897 MIR548A3-201ENST00000385297 97 ntBASIC-0.91□□□□□ -2.56
SHMT2P34897 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.91□□□□□ -2.56
SHMT2P34897 RNU7-134P-201ENST00000458997 64 ntBASIC-0.91□□□□□ -2.56
SHMT2P34897 MIR6509-201ENST00000614603 85 ntBASIC-0.91□□□□□ -2.56
SHMT2P34897 MIR4773-1-201ENST00000637203 78 ntBASIC-0.91□□□□□ -2.56
SHMT2P34897 SNORA2.1-201ENST00000363089 137 ntBASIC-0.92□□□□□ -2.56
SHMT2P34897 snosnR66.1-201ENST00000391095 99 ntBASIC-0.92□□□□□ -2.56
SHMT2P34897 RNU6-659P-201ENST00000516454 104 ntBASIC-0.92□□□□□ -2.56
SHMT2P34897 MIR548AG1-201ENST00000579932 66 ntBASIC-0.92□□□□□ -2.56
SHMT2P34897 AC006254.2-201ENST00000603259 279 ntBASIC-0.92□□□□□ -2.56
SHMT2P34897 U6.81-201ENST00000612550 106 ntBASIC-0.92□□□□□ -2.56
SHMT2P34897 RNU4-32P-201ENST00000363404 141 ntBASIC-0.93□□□□□ -2.56
SHMT2P34897 SNORD95.1-201ENST00000364099 68 ntBASIC-0.93□□□□□ -2.56
SHMT2P34897 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.93□□□□□ -2.56
SHMT2P34897 SNORD115-22-201ENST00000364456 82 ntBASIC-0.93□□□□□ -2.56
SHMT2P34897 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.93□□□□□ -2.56
SHMT2P34897 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.93□□□□□ -2.56
SHMT2P34897 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.93□□□□□ -2.56
SHMT2P34897 MTATP6P29-201ENST00000415057 132 ntBASIC-0.93□□□□□ -2.56
SHMT2P34897 SNORD63.1-201ENST00000516178 80 ntBASIC-0.93□□□□□ -2.56
SHMT2P34897 RNY4P3-201ENST00000365254 95 ntBASIC-0.94□□□□□ -2.56
SHMT2P34897 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.94□□□□□ -2.56
SHMT2P34897 RNA5SP470-201ENST00000516463 106 ntBASIC-0.94□□□□□ -2.56
SHMT2P34897 RNU6-537P-201ENST00000517277 103 ntBASIC-0.94□□□□□ -2.56
SHMT2P34897 MIR378F-201ENST00000578143 78 ntBASIC-0.94□□□□□ -2.56
SHMT2P34897 AC090425.1-201ENST00000610007 140 ntBASIC-0.94□□□□□ -2.56
SHMT2P34897 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.94□□□□□ -2.56
SHMT2P34897 MIR519A2-201ENST00000384990 87 ntBASIC-0.95□□□□□ -2.56
SHMT2P34897 RNU6-274P-201ENST00000459566 107 ntBASIC-0.95□□□□□ -2.56
SHMT2P34897 RNU6-904P-201ENST00000516206 101 ntBASIC-0.95□□□□□ -2.56
SHMT2P34897 RNY1P9-201ENST00000532431 109 ntBASIC-0.95□□□□□ -2.56
SHMT2P34897 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.95□□□□□ -2.56
SHMT2P34897 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.96□□□□□ -2.56
SHMT2P34897 MIR521-2-201ENST00000384818 87 ntBASIC-0.96□□□□□ -2.56
SHMT2P34897 MIR6086-201ENST00000638065 55 ntBASIC-0.96□□□□□ -2.56
SHMT2P34897 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.97□□□□□ -2.56
SHMT2P34897 SNORA26.4-201ENST00000391188 123 ntBASIC-0.97□□□□□ -2.56
SHMT2P34897 RNU2-51P-201ENST00000410708 197 ntBASIC-0.97□□□□□ -2.56
SHMT2P34897 RNU7-153P-201ENST00000516455 62 ntBASIC-0.97□□□□□ -2.56
SHMT2P34897 MIR4796-201ENST00000580742 81 ntBASIC-0.97□□□□□ -2.56
SHMT2P34897 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.97□□□□□ -2.56
SHMT2P34897 MIR6739-201ENST00000622461 75 ntBASIC-0.97□□□□□ -2.56
SHMT2P34897 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.98□□□□□ -2.57
SHMT2P34897 RNU6-880P-201ENST00000384526 107 ntBASIC-0.98□□□□□ -2.57
SHMT2P34897 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.98□□□□□ -2.57
SHMT2P34897 RNU6-887P-201ENST00000410660 100 ntBASIC-0.98□□□□□ -2.57
SHMT2P34897 AL691482.2-201ENST00000457453 84 ntBASIC-0.98□□□□□ -2.57
SHMT2P34897 SCARNA23-201ENST00000516060 130 ntBASIC-0.98□□□□□ -2.57
SHMT2P34897 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.98□□□□□ -2.57
SHMT2P34897 snoU83B.1-201ENST00000517136 88 ntBASIC-0.98□□□□□ -2.57
SHMT2P34897 RNA5SP26-201ENST00000362406 119 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 RNU5F-1-201ENST00000362507 117 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 RNU6-907P-201ENST00000390924 102 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 RNU6-972P-201ENST00000391208 107 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 RNU7-154P-201ENST00000516194 62 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 RNU6-794P-201ENST00000517261 64 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 AP002795.1-201ENST00000534879 84 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 MIR4324-201ENST00000584846 72 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 MIR6818-201ENST00000621576 65 ntBASIC-0.99□□□□□ -2.57
SHMT2P34897 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.99□□□□□ -2.57
SHMT2P34897 RNU6-924P-201ENST00000362926 108 ntBASIC-1□□□□□ -2.57
SHMT2P34897 RNU6-774P-201ENST00000363238 107 ntBASIC-1□□□□□ -2.57
SHMT2P34897 SNORD115-33-201ENST00000363723 82 ntBASIC-1□□□□□ -2.57
SHMT2P34897 RNU6-1107P-201ENST00000364817 104 ntBASIC-1□□□□□ -2.57
SHMT2P34897 MIR29B1-201ENST00000385015 81 ntBASIC-1□□□□□ -2.57
SHMT2P34897 RNU6-479P-201ENST00000516348 105 ntBASIC-1□□□□□ -2.57
SHMT2P34897 MIR6738-201ENST00000619620 64 ntBASIC-1□□□□□ -2.57
SHMT2P34897 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-1□□□□□ -2.57
SHMT2P34897 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 SNORD115-27-201ENST00000364430 82 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 SNORD116-14-201ENST00000383894 92 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 SNORD116-17-201ENST00000383929 92 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 SNORD116-15-201ENST00000384445 92 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 RNU6-246P-201ENST00000384702 107 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 SNORD116-19-201ENST00000384729 92 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 snoU13.19-201ENST00000459148 104 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 RNU7-61P-201ENST00000515897 61 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 RNA5SP67-201ENST00000516422 131 ntBASIC-1.01□□□□□ -2.57
SHMT2P34897 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1.01□□□□□ -2.57
SHMT2P34897 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.02□□□□□ -2.57
SHMT2P34897 MIR590-201ENST00000385008 97 ntBASIC-1.02□□□□□ -2.57
SHMT2P34897 SNORD19-201ENST00000391191 68 ntBASIC-1.02□□□□□ -2.57
SHMT2P34897 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.02□□□□□ -2.57
SHMT2P34897 RNU6-518P-201ENST00000516056 96 ntBASIC-1.02□□□□□ -2.57
SHMT2P34897 RNU6-412P-201ENST00000516434 106 ntBASIC-1.02□□□□□ -2.57
SHMT2P34897 RNU6-656P-201ENST00000516785 107 ntBASIC-1.02□□□□□ -2.57
SHMT2P34897 MIR4306-201ENST00000583390 91 ntBASIC-1.02□□□□□ -2.57
SHMT2P34897 SNORD116-10-201ENST00000363791 102 ntBASIC-1.03□□□□□ -2.57
SHMT2P34897 RNU6-340P-201ENST00000364005 107 ntBASIC-1.03□□□□□ -2.57
SHMT2P34897 SNORD116-21-201ENST00000384507 92 ntBASIC-1.03□□□□□ -2.57
SHMT2P34897 RNU6-30P-201ENST00000384561 107 ntBASIC-1.03□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 176.5 ms