Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL354695.1-201ENST00000427935 228 ntBASIC1.79□□□□□ -2.12
COL9A1P20849 AC025627.3-201ENST00000582078 182 ntBASIC1.79□□□□□ -2.12
COL9A1P20849 MIR6078-201ENST00000611069 100 ntBASIC1.79□□□□□ -2.12
COL9A1P20849 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
COL9A1P20849 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.78□□□□□ -2.12
COL9A1P20849 RNA5SP257-201ENST00000363023 116 ntBASIC1.78□□□□□ -2.12
COL9A1P20849 MIR200A-201ENST00000384875 90 ntBASIC1.78□□□□□ -2.12
COL9A1P20849 HMGN2P38-201ENST00000423806 265 ntBASIC1.78□□□□□ -2.12
COL9A1P20849 RNA5SP227-201ENST00000516184 113 ntBASIC1.78□□□□□ -2.12
COL9A1P20849 MIR7110-201ENST00000612638 86 ntBASIC1.78□□□□□ -2.12
COL9A1P20849 SNORA16.1-201ENST00000364597 132 ntBASIC1.77□□□□□ -2.13
COL9A1P20849 MIR19B1-201ENST00000384829 87 ntBASIC1.77□□□□□ -2.13
COL9A1P20849 SNORA40B-201ENST00000385573 128 ntBASIC1.77□□□□□ -2.13
COL9A1P20849 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.77□□□□□ -2.13
COL9A1P20849 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.77□□□□□ -2.13
COL9A1P20849 MIR548E-201ENST00000408287 88 ntBASIC1.77□□□□□ -2.13
COL9A1P20849 AC006210.1-201ENST00000424882 111 ntBASIC1.77□□□□□ -2.13
COL9A1P20849 CYP3A54P-201ENST00000566950 75 ntBASIC1.77□□□□□ -2.13
COL9A1P20849 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.77□□□□□ -2.13
COL9A1P20849 Y_RNA.74-201ENST00000362911 99 ntBASIC1.76□□□□□ -2.13
COL9A1P20849 SNORD110-201ENST00000408189 75 ntBASIC1.76□□□□□ -2.13
COL9A1P20849 RNU6-419P-201ENST00000517030 63 ntBASIC1.76□□□□□ -2.13
COL9A1P20849 MIR582-201ENST00000365731 98 ntBASIC1.75□□□□□ -2.13
COL9A1P20849 SNORD116-16-201ENST00000384533 92 ntBASIC1.75□□□□□ -2.13
COL9A1P20849 MIR548AL-201ENST00000578416 97 ntBASIC1.75□□□□□ -2.13
COL9A1P20849 U6.96-201ENST00000636425 70 ntBASIC1.75□□□□□ -2.13
COL9A1P20849 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL9A1P20849 RNU4-45P-201ENST00000365469 141 ntBASIC1.74□□□□□ -2.13
COL9A1P20849 RNA5SP121-201ENST00000516537 101 ntBASIC1.74□□□□□ -2.13
COL9A1P20849 AC138207.3-201ENST00000585289 166 ntBASIC1.74□□□□□ -2.13
COL9A1P20849 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL9A1P20849 SNORA9.1-201ENST00000362412 131 ntBASIC1.73□□□□□ -2.13
COL9A1P20849 SNORD114-27-201ENST00000363766 70 ntBASIC1.73□□□□□ -2.13
COL9A1P20849 RNU4-52P-201ENST00000384209 138 ntBASIC1.73□□□□□ -2.13
COL9A1P20849 MIR4419B-201ENST00000577260 68 ntBASIC1.73□□□□□ -2.13
COL9A1P20849 MIR548AE1-201ENST00000583292 70 ntBASIC1.73□□□□□ -2.13
COL9A1P20849 AP000553.5-201ENST00000641933 54 ntBASIC1.73□□□□□ -2.13
COL9A1P20849 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
COL9A1P20849 RNA5SP327-201ENST00000362494 101 ntBASIC1.72□□□□□ -2.13
COL9A1P20849 RNU6-810P-201ENST00000364001 107 ntBASIC1.72□□□□□ -2.13
COL9A1P20849 RNA5SP363-201ENST00000365072 115 ntBASIC1.72□□□□□ -2.13
COL9A1P20849 MIR4473-201ENST00000583731 91 ntBASIC1.72□□□□□ -2.13
COL9A1P20849 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
COL9A1P20849 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.71□□□□□ -2.14
COL9A1P20849 SNORA67.6-201ENST00000391093 99 ntBASIC1.71□□□□□ -2.14
COL9A1P20849 AL590095.2-201ENST00000604136 117 ntBASIC1.71□□□□□ -2.14
COL9A1P20849 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
COL9A1P20849 RNU6-518P-201ENST00000516056 96 ntBASIC1.7□□□□□ -2.14
COL9A1P20849 RNA5SP268-201ENST00000516828 124 ntBASIC1.7□□□□□ -2.14
COL9A1P20849 MIR4490-201ENST00000582647 84 ntBASIC1.7□□□□□ -2.14
COL9A1P20849 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.69□□□□□ -2.14
COL9A1P20849 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.69□□□□□ -2.14
COL9A1P20849 RNU6-822P-201ENST00000362707 106 ntBASIC1.69□□□□□ -2.14
COL9A1P20849 MIR516B1-201ENST00000385211 90 ntBASIC1.69□□□□□ -2.14
COL9A1P20849 RNU6-1246P-201ENST00000391064 107 ntBASIC1.69□□□□□ -2.14
COL9A1P20849 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.69□□□□□ -2.14
COL9A1P20849 RNU6-924P-201ENST00000362926 108 ntBASIC1.68□□□□□ -2.14
COL9A1P20849 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
COL9A1P20849 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
COL9A1P20849 SNORD2-201ENST00000459163 69 ntBASIC1.68□□□□□ -2.14
COL9A1P20849 AC243829.6-201ENST00000612652 106 ntBASIC1.68□□□□□ -2.14
COL9A1P20849 RNU6-1204P-201ENST00000363948 107 ntBASIC1.67□□□□□ -2.14
COL9A1P20849 MIR4448-201ENST00000584360 86 ntBASIC1.67□□□□□ -2.14
COL9A1P20849 MIR18A-201ENST00000362310 71 ntBASIC1.66□□□□□ -2.14
COL9A1P20849 SNORA36.1-201ENST00000363424 132 ntBASIC1.66□□□□□ -2.14
COL9A1P20849 MIR527-201ENST00000385244 85 ntBASIC1.66□□□□□ -2.14
COL9A1P20849 AC244090.1-201ENST00000441884 93 ntBASIC1.66□□□□□ -2.14
COL9A1P20849 Y_RNA.282-201ENST00000364793 102 ntBASIC1.65□□□□□ -2.15
COL9A1P20849 RNA5SP330-201ENST00000517096 96 ntBASIC1.65□□□□□ -2.15
COL9A1P20849 AC243829.3-201ENST00000622177 108 ntBASIC1.65□□□□□ -2.15
COL9A1P20849 MIR20A-201ENST00000362279 71 ntBASIC1.64□□□□□ -2.15
COL9A1P20849 SNORD124-201ENST00000459577 104 ntBASIC1.64□□□□□ -2.15
COL9A1P20849 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.64□□□□□ -2.15
COL9A1P20849 uc_338.20-201ENST00000621563 178 ntBASIC1.64□□□□□ -2.15
COL9A1P20849 SNORD48-201ENST00000364953 64 ntBASIC1.63□□□□□ -2.15
COL9A1P20849 SNORD114-24-201ENST00000365029 72 ntBASIC1.63□□□□□ -2.15
COL9A1P20849 RNU6-742P-201ENST00000365289 107 ntBASIC1.63□□□□□ -2.15
COL9A1P20849 RNU6-172P-201ENST00000411000 93 ntBASIC1.63□□□□□ -2.15
COL9A1P20849 MIR5000-201ENST00000577717 103 ntBASIC1.63□□□□□ -2.15
COL9A1P20849 MIR924-201ENST00000638017 53 ntBASIC1.63□□□□□ -2.15
COL9A1P20849 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.63□□□□□ -2.15
COL9A1P20849 RNU6-59P-201ENST00000384787 107 ntBASIC1.62□□□□□ -2.15
COL9A1P20849 MIR1323-201ENST00000408090 73 ntBASIC1.62□□□□□ -2.15
COL9A1P20849 MIR1255B2-201ENST00000408618 67 ntBASIC1.62□□□□□ -2.15
COL9A1P20849 MIR5706-201ENST00000579841 80 ntBASIC1.62□□□□□ -2.15
COL9A1P20849 MIR7107-201ENST00000611489 80 ntBASIC1.62□□□□□ -2.15
COL9A1P20849 SNORD1B-201ENST00000363091 84 ntBASIC1.61□□□□□ -2.15
COL9A1P20849 RNU6-246P-201ENST00000384702 107 ntBASIC1.61□□□□□ -2.15
COL9A1P20849 MIR519A2-201ENST00000384990 87 ntBASIC1.61□□□□□ -2.15
COL9A1P20849 RNU6-721P-201ENST00000410155 105 ntBASIC1.61□□□□□ -2.15
COL9A1P20849 RNA5SP255-201ENST00000516370 107 ntBASIC1.61□□□□□ -2.15
COL9A1P20849 RNA5SP364-201ENST00000516938 78 ntBASIC1.61□□□□□ -2.15
COL9A1P20849 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
COL9A1P20849 MIR429-201ENST00000362106 83 ntBASIC1.6□□□□□ -2.15
COL9A1P20849 RNU6-133P-201ENST00000383989 107 ntBASIC1.6□□□□□ -2.15
COL9A1P20849 RNA5SP94-201ENST00000516917 108 ntBASIC1.6□□□□□ -2.15
COL9A1P20849 SNORA31.24-201ENST00000517232 57 ntBASIC1.6□□□□□ -2.15
COL9A1P20849 MIR618-201ENST00000385287 98 ntBASIC1.59□□□□□ -2.15
COL9A1P20849 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.59□□□□□ -2.15
COL9A1P20849 RNU7-154P-201ENST00000516194 62 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 210.8 ms