Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.38□□□□□ -2.63
CLDN3O15551 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.38□□□□□ -2.63
CLDN3O15551 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.38□□□□□ -2.63
CLDN3O15551 MIR548I1-201ENST00000408810 149 ntBASIC-1.38□□□□□ -2.63
CLDN3O15551 snoU13.17-201ENST00000458802 104 ntBASIC-1.38□□□□□ -2.63
CLDN3O15551 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.38□□□□□ -2.63
CLDN3O15551 AL353803.5-201ENST00000599815 141 ntBASIC-1.38□□□□□ -2.63
CLDN3O15551 MIR548A3-201ENST00000385297 97 ntBASIC-1.39□□□□□ -2.63
CLDN3O15551 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.39□□□□□ -2.63
CLDN3O15551 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.39□□□□□ -2.63
CLDN3O15551 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.4□□□□□ -2.63
CLDN3O15551 SNORD33.1-201ENST00000516213 88 ntBASIC-1.4□□□□□ -2.63
CLDN3O15551 RNU6-971P-201ENST00000516920 106 ntBASIC-1.4□□□□□ -2.63
CLDN3O15551 MIR4464-201ENST00000580818 92 ntBASIC-1.4□□□□□ -2.63
CLDN3O15551 MIR4773-1-201ENST00000637203 78 ntBASIC-1.4□□□□□ -2.63
CLDN3O15551 AC099654.10-201ENST00000640395 161 ntBASIC-1.4□□□□□ -2.63
CLDN3O15551 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.41□□□□□ -2.64
CLDN3O15551 SNORD114-17-201ENST00000364699 75 ntBASIC-1.41□□□□□ -2.64
CLDN3O15551 SNORD58A-201ENST00000383875 65 ntBASIC-1.41□□□□□ -2.64
CLDN3O15551 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.41□□□□□ -2.64
CLDN3O15551 U6.95-201ENST00000636931 70 ntBASIC-1.41□□□□□ -2.64
CLDN3O15551 RNU5F-1-201ENST00000362507 117 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 RNU6-824P-201ENST00000363724 104 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 RNU6-80P-201ENST00000384195 107 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 RNU6-972P-201ENST00000391208 107 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 RNA5SP147-201ENST00000516493 109 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 AC138207.3-201ENST00000585289 166 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 MIR6509-201ENST00000614603 85 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 AL627230.5-201ENST00000619807 58 ntBASIC-1.42□□□□□ -2.64
CLDN3O15551 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.43□□□□□ -2.64
CLDN3O15551 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.43□□□□□ -2.64
CLDN3O15551 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.43□□□□□ -2.64
CLDN3O15551 SNORA33.1-201ENST00000364957 130 ntBASIC-1.43□□□□□ -2.64
CLDN3O15551 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.43□□□□□ -2.64
CLDN3O15551 MIR203A-201ENST00000384836 110 ntBASIC-1.43□□□□□ -2.64
CLDN3O15551 SNX3P1X-201ENST00000414887 175 ntBASIC-1.43□□□□□ -2.64
CLDN3O15551 RNA5SP180-201ENST00000516181 101 ntBASIC-1.43□□□□□ -2.64
CLDN3O15551 MIR198-201ENST00000637333 62 ntBASIC-1.43□□□□□ -2.64
CLDN3O15551 SNORA2.1-201ENST00000363089 137 ntBASIC-1.44□□□□□ -2.64
CLDN3O15551 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.44□□□□□ -2.64
CLDN3O15551 RNA5SP331-201ENST00000364986 107 ntBASIC-1.44□□□□□ -2.64
CLDN3O15551 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.44□□□□□ -2.64
CLDN3O15551 AL445584.3-201ENST00000617173 78 ntBASIC-1.44□□□□□ -2.64
CLDN3O15551 MIR6888-201ENST00000621977 67 ntBASIC-1.44□□□□□ -2.64
CLDN3O15551 MIR382-201ENST00000637119 76 ntBASIC-1.44□□□□□ -2.64
CLDN3O15551 MIR601-201ENST00000385256 79 ntBASIC-1.45□□□□□ -2.64
CLDN3O15551 MIR1255B2-201ENST00000408618 67 ntBASIC-1.45□□□□□ -2.64
CLDN3O15551 HLA-S-202ENST00000425174 53 ntBASIC-1.45□□□□□ -2.64
CLDN3O15551 SCARNA23-201ENST00000516060 130 ntBASIC-1.45□□□□□ -2.64
CLDN3O15551 AC026421.1-201ENST00000519101 163 ntBASIC-1.45□□□□□ -2.64
CLDN3O15551 MIR3657-201ENST00000584818 117 ntBASIC-1.45□□□□□ -2.64
CLDN3O15551 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.45□□□□□ -2.64
CLDN3O15551 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.46□□□□□ -2.64
CLDN3O15551 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.46□□□□□ -2.64
CLDN3O15551 RNU6-887P-201ENST00000410660 100 ntBASIC-1.46□□□□□ -2.64
CLDN3O15551 AL691482.2-201ENST00000457453 84 ntBASIC-1.46□□□□□ -2.64
CLDN3O15551 RNU6-346P-201ENST00000516288 111 ntBASIC-1.46□□□□□ -2.64
CLDN3O15551 CYP3A54P-201ENST00000566950 75 ntBASIC-1.46□□□□□ -2.64
CLDN3O15551 RNU6-659P-201ENST00000516454 104 ntBASIC-1.47□□□□□ -2.64
CLDN3O15551 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.47□□□□□ -2.64
CLDN3O15551 Y_RNA.96-201ENST00000363092 109 ntBASIC-1.48□□□□□ -2.65
CLDN3O15551 MIR1285-2-201ENST00000408311 88 ntBASIC-1.48□□□□□ -2.65
CLDN3O15551 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.48□□□□□ -2.65
CLDN3O15551 RNU6-904P-201ENST00000516206 101 ntBASIC-1.48□□□□□ -2.65
CLDN3O15551 snoU83B.1-201ENST00000517136 88 ntBASIC-1.48□□□□□ -2.65
CLDN3O15551 RNY1P5-201ENST00000383890 115 ntBASIC-1.49□□□□□ -2.65
CLDN3O15551 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.49□□□□□ -2.65
CLDN3O15551 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.49□□□□□ -2.65
CLDN3O15551 SNORA19.1-201ENST00000410656 129 ntBASIC-1.49□□□□□ -2.65
CLDN3O15551 RNU6-412P-201ENST00000516434 106 ntBASIC-1.49□□□□□ -2.65
CLDN3O15551 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.5□□□□□ -2.65
CLDN3O15551 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.5□□□□□ -2.65
CLDN3O15551 U6.81-201ENST00000612550 106 ntBASIC-1.5□□□□□ -2.65
CLDN3O15551 RNU6-924P-201ENST00000362926 108 ntBASIC-1.51□□□□□ -2.65
CLDN3O15551 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.51□□□□□ -2.65
CLDN3O15551 RNU6-880P-201ENST00000384526 107 ntBASIC-1.51□□□□□ -2.65
CLDN3O15551 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.51□□□□□ -2.65
CLDN3O15551 RNU6-255P-201ENST00000516957 105 ntBASIC-1.51□□□□□ -2.65
CLDN3O15551 MIR4796-201ENST00000580742 81 ntBASIC-1.51□□□□□ -2.65
CLDN3O15551 SNORD116-10-201ENST00000363791 102 ntBASIC-1.52□□□□□ -2.65
CLDN3O15551 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.52□□□□□ -2.65
CLDN3O15551 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.52□□□□□ -2.65
CLDN3O15551 MIR365A-201ENST00000362260 87 ntBASIC-1.53□□□□□ -2.65
CLDN3O15551 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.53□□□□□ -2.65
CLDN3O15551 MIR521-2-201ENST00000384818 87 ntBASIC-1.54□□□□□ -2.66
CLDN3O15551 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.54□□□□□ -2.66
CLDN3O15551 MIR5591-201ENST00000578248 65 ntBASIC-1.54□□□□□ -2.66
CLDN3O15551 MIR4441-201ENST00000582623 100 ntBASIC-1.54□□□□□ -2.66
CLDN3O15551 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.54□□□□□ -2.66
CLDN3O15551 MIR1246-201ENST00000636535 73 ntBASIC-1.54□□□□□ -2.66
CLDN3O15551 SNORD116-21-201ENST00000384507 92 ntBASIC-1.55□□□□□ -2.66
CLDN3O15551 MIR1236-201ENST00000408340 102 ntBASIC-1.55□□□□□ -2.66
CLDN3O15551 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.55□□□□□ -2.66
CLDN3O15551 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.55□□□□□ -2.66
CLDN3O15551 RNU6-907P-201ENST00000390924 102 ntBASIC-1.56□□□□□ -2.66
CLDN3O15551 RNU6-537P-201ENST00000517277 103 ntBASIC-1.56□□□□□ -2.66
CLDN3O15551 Y_RNA.606-201ENST00000410579 103 ntBASIC-1.57□□□□□ -2.66
CLDN3O15551 RNU6-158P-201ENST00000517104 100 ntBASIC-1.57□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 235.6 ms