Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR6739-201ENST00000622461 75 ntBASIC1.28□□□□□ -2.2
USP3Q9Y6I4 Y_RNA.226-201ENST00000364337 114 ntBASIC1.27□□□□□ -2.21
USP3Q9Y6I4 Y_RNA.375-201ENST00000365625 101 ntBASIC1.27□□□□□ -2.21
USP3Q9Y6I4 RNA5SP215-201ENST00000363440 122 ntBASIC1.26□□□□□ -2.21
USP3Q9Y6I4 RNU6-1187P-201ENST00000364771 110 ntBASIC1.26□□□□□ -2.21
USP3Q9Y6I4 RNA5SP94-201ENST00000516917 108 ntBASIC1.26□□□□□ -2.21
USP3Q9Y6I4 MIR4661-201ENST00000582720 75 ntBASIC1.26□□□□□ -2.21
USP3Q9Y6I4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
USP3Q9Y6I4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
USP3Q9Y6I4 Y_RNA.407-201ENST00000383986 113 ntBASIC1.25□□□□□ -2.21
USP3Q9Y6I4 RNU6-1162P-201ENST00000384443 104 ntBASIC1.25□□□□□ -2.21
USP3Q9Y6I4 SNORA36.1-201ENST00000363424 132 ntBASIC1.24□□□□□ -2.21
USP3Q9Y6I4 MIR499A-201ENST00000384903 122 ntBASIC1.24□□□□□ -2.21
USP3Q9Y6I4 AC006210.1-201ENST00000424882 111 ntBASIC1.24□□□□□ -2.21
USP3Q9Y6I4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.24□□□□□ -2.21
USP3Q9Y6I4 RNU5B-6P-201ENST00000516765 68 ntBASIC1.24□□□□□ -2.21
USP3Q9Y6I4 AL353765.1-201ENST00000605514 183 ntBASIC1.24□□□□□ -2.21
USP3Q9Y6I4 MIR6078-201ENST00000611069 100 ntBASIC1.24□□□□□ -2.21
USP3Q9Y6I4 AC110620.1-201ENST00000416042 228 ntBASIC1.23□□□□□ -2.21
USP3Q9Y6I4 RNU6-939P-201ENST00000384634 107 ntBASIC1.22□□□□□ -2.21
USP3Q9Y6I4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.22□□□□□ -2.21
USP3Q9Y6I4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
USP3Q9Y6I4 RNU6-990P-201ENST00000364385 104 ntBASIC1.21□□□□□ -2.22
USP3Q9Y6I4 RNU6-302P-201ENST00000365249 107 ntBASIC1.21□□□□□ -2.22
USP3Q9Y6I4 SCARNA17.3-201ENST00000516381 125 ntBASIC1.21□□□□□ -2.22
USP3Q9Y6I4 MIR7107-201ENST00000611489 80 ntBASIC1.21□□□□□ -2.22
USP3Q9Y6I4 SNORA15B-2-201ENST00000384058 135 ntBASIC1.2□□□□□ -2.22
USP3Q9Y6I4 SNORA15B-1-201ENST00000384334 135 ntBASIC1.2□□□□□ -2.22
USP3Q9Y6I4 MIR521-2-201ENST00000384818 87 ntBASIC1.2□□□□□ -2.22
USP3Q9Y6I4 SNORD110-201ENST00000408189 75 ntBASIC1.2□□□□□ -2.22
USP3Q9Y6I4 RNU6-656P-201ENST00000516785 107 ntBASIC1.2□□□□□ -2.22
USP3Q9Y6I4 SNORA40.17-201ENST00000517256 115 ntBASIC1.2□□□□□ -2.22
USP3Q9Y6I4 MIR5706-201ENST00000579841 80 ntBASIC1.2□□□□□ -2.22
USP3Q9Y6I4 RNA5SP222-201ENST00000411039 105 ntBASIC1.19□□□□□ -2.22
USP3Q9Y6I4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
USP3Q9Y6I4 MIR9-2-201ENST00000384838 87 ntBASIC1.18□□□□□ -2.22
USP3Q9Y6I4 RNA5SP147-201ENST00000516493 109 ntBASIC1.18□□□□□ -2.22
USP3Q9Y6I4 AC021146.9-201ENST00000512503 156 ntBASIC1.17□□□□□ -2.22
USP3Q9Y6I4 uc_338.10-201ENST00000621872 182 ntBASIC1.17□□□□□ -2.22
USP3Q9Y6I4 SNORA63.6-201ENST00000364921 119 ntBASIC1.16□□□□□ -2.22
USP3Q9Y6I4 RNU6-499P-201ENST00000365615 107 ntBASIC1.16□□□□□ -2.22
USP3Q9Y6I4 RNU6-1089P-201ENST00000516473 104 ntBASIC1.16□□□□□ -2.22
USP3Q9Y6I4 AL109933.3-201ENST00000619095 188 ntBASIC1.16□□□□□ -2.22
USP3Q9Y6I4 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.16□□□□□ -2.22
USP3Q9Y6I4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.16□□□□□ -2.22
USP3Q9Y6I4 Y_RNA.118-201ENST00000363300 101 ntBASIC1.15□□□□□ -2.23
USP3Q9Y6I4 snoU13.18-201ENST00000459483 104 ntBASIC1.15□□□□□ -2.23
USP3Q9Y6I4 U7.6-201ENST00000610841 64 ntBASIC1.15□□□□□ -2.23
USP3Q9Y6I4 MIR1285-1-201ENST00000408593 84 ntBASIC1.14□□□□□ -2.23
USP3Q9Y6I4 MIR4295-201ENST00000585286 85 ntBASIC1.14□□□□□ -2.23
USP3Q9Y6I4 MIR8070-201ENST00000616510 88 ntBASIC1.14□□□□□ -2.23
USP3Q9Y6I4 MIR652-201ENST00000385278 98 ntBASIC1.13□□□□□ -2.23
USP3Q9Y6I4 MIR140-201ENST00000385282 100 ntBASIC1.13□□□□□ -2.23
USP3Q9Y6I4 SCARNA21.1-201ENST00000515996 128 ntBASIC1.13□□□□□ -2.23
USP3Q9Y6I4 RNA5SP299-201ENST00000391203 116 ntBASIC1.12□□□□□ -2.23
USP3Q9Y6I4 MIR1276-201ENST00000408707 83 ntBASIC1.12□□□□□ -2.23
USP3Q9Y6I4 Y_RNA.633-201ENST00000459107 95 ntBASIC1.12□□□□□ -2.23
USP3Q9Y6I4 AC087343.1-201ENST00000477341 475 ntBASIC1.12□□□□□ -2.23
USP3Q9Y6I4 MIR4473-201ENST00000583731 91 ntBASIC1.12□□□□□ -2.23
USP3Q9Y6I4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.11□□□□□ -2.23
USP3Q9Y6I4 RNU6-940P-201ENST00000363433 104 ntBASIC1.11□□□□□ -2.23
USP3Q9Y6I4 SNORA25.5-201ENST00000363782 126 ntBASIC1.11□□□□□ -2.23
USP3Q9Y6I4 SNORD2-201ENST00000459163 69 ntBASIC1.11□□□□□ -2.23
USP3Q9Y6I4 RNA5SP102-201ENST00000516865 106 ntBASIC1.11□□□□□ -2.23
USP3Q9Y6I4 SNORD114-21-201ENST00000606412 72 ntBASIC1.11□□□□□ -2.23
USP3Q9Y6I4 MIR7111-201ENST00000619751 72 ntBASIC1.11□□□□□ -2.23
USP3Q9Y6I4 AC092634.7-201ENST00000621022 103 ntBASIC1.11□□□□□ -2.23
USP3Q9Y6I4 Y_RNA.355-201ENST00000365462 98 ntBASIC1.1□□□□□ -2.23
USP3Q9Y6I4 MIR96-201ENST00000362288 78 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 Y_RNA.224-201ENST00000364308 111 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 SNORA36.2-201ENST00000384004 127 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 RNU6-42P-201ENST00000384165 107 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 RNU6-110P-201ENST00000384508 104 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 MIR608-201ENST00000384820 100 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 AL157398.1-201ENST00000452981 186 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 RNU6-848P-201ENST00000515948 107 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 RNU6-617P-201ENST00000516147 107 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 RNU6-473P-201ENST00000516164 107 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 RNU6-1049P-201ENST00000516414 107 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 MIR6504-201ENST00000613520 61 ntBASIC1.09□□□□□ -2.23
USP3Q9Y6I4 RNA5SP517-201ENST00000364724 117 ntBASIC1.08□□□□□ -2.24
USP3Q9Y6I4 RNA5SP220-201ENST00000516298 104 ntBASIC1.08□□□□□ -2.24
USP3Q9Y6I4 MIR548AE1-201ENST00000583292 70 ntBASIC1.08□□□□□ -2.24
USP3Q9Y6I4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.08□□□□□ -2.24
USP3Q9Y6I4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.07□□□□□ -2.24
USP3Q9Y6I4 MIR20A-201ENST00000362279 71 ntBASIC1.07□□□□□ -2.24
USP3Q9Y6I4 SNORA40.8-201ENST00000411034 126 ntBASIC1.07□□□□□ -2.24
USP3Q9Y6I4 SNORD71-201ENST00000411292 86 ntBASIC1.07□□□□□ -2.24
USP3Q9Y6I4 AC244090.1-201ENST00000441884 93 ntBASIC1.07□□□□□ -2.24
USP3Q9Y6I4 SNORA70.25-201ENST00000612741 95 ntBASIC1.07□□□□□ -2.24
USP3Q9Y6I4 MIR6767-201ENST00000637302 66 ntBASIC1.07□□□□□ -2.24
USP3Q9Y6I4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
USP3Q9Y6I4 RNU4-38P-201ENST00000364472 129 ntBASIC1.06□□□□□ -2.24
USP3Q9Y6I4 MIR548E-201ENST00000408287 88 ntBASIC1.06□□□□□ -2.24
USP3Q9Y6I4 OR2A41P-201ENST00000473586 105 ntBASIC1.06□□□□□ -2.24
USP3Q9Y6I4 AL590095.2-201ENST00000604136 117 ntBASIC1.06□□□□□ -2.24
USP3Q9Y6I4 Y_RNA.125-201ENST00000363371 111 ntBASIC1.05□□□□□ -2.24
USP3Q9Y6I4 SNORD118-201ENST00000363593 134 ntBASIC1.05□□□□□ -2.24
USP3Q9Y6I4 RNU1-93P-201ENST00000364704 169 ntBASIC1.05□□□□□ -2.24
USP3Q9Y6I4 snoU13.13-201ENST00000458842 104 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 209.4 ms