Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 U6.81-201ENST00000612550 106 ntBASIC0.44□□□□□ -2.34
VSX1Q9NZR4 Y_RNA.12-201ENST00000362393 112 ntBASIC0.43□□□□□ -2.34
VSX1Q9NZR4 Y_RNA.125-201ENST00000363371 111 ntBASIC0.43□□□□□ -2.34
VSX1Q9NZR4 RNU6-573P-201ENST00000383938 106 ntBASIC0.43□□□□□ -2.34
VSX1Q9NZR4 SNORD78.1-201ENST00000390866 65 ntBASIC0.43□□□□□ -2.34
VSX1Q9NZR4 RNU6-274P-201ENST00000459566 107 ntBASIC0.43□□□□□ -2.34
VSX1Q9NZR4 RNU6-1108P-201ENST00000516308 104 ntBASIC0.43□□□□□ -2.34
VSX1Q9NZR4 Y_RNA.685-201ENST00000516532 108 ntBASIC0.43□□□□□ -2.34
VSX1Q9NZR4 RNU1-29P-201ENST00000606574 126 ntBASIC0.43□□□□□ -2.34
VSX1Q9NZR4 SNORA70.25-201ENST00000612741 95 ntBASIC0.43□□□□□ -2.34
VSX1Q9NZR4 Y_RNA.313-201ENST00000365095 103 ntBASIC0.42□□□□□ -2.34
VSX1Q9NZR4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.42□□□□□ -2.34
VSX1Q9NZR4 RNA5SP128-201ENST00000365305 116 ntBASIC0.42□□□□□ -2.34
VSX1Q9NZR4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.42□□□□□ -2.34
VSX1Q9NZR4 MIR4752-201ENST00000579672 72 ntBASIC0.42□□□□□ -2.34
VSX1Q9NZR4 MIR6755-201ENST00000619993 66 ntBASIC0.42□□□□□ -2.34
VSX1Q9NZR4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.41□□□□□ -2.34
VSX1Q9NZR4 SNORA9.1-201ENST00000362412 131 ntBASIC0.41□□□□□ -2.34
VSX1Q9NZR4 RNA5SP347-201ENST00000362445 119 ntBASIC0.41□□□□□ -2.34
VSX1Q9NZR4 RNU6-478P-201ENST00000363904 110 ntBASIC0.41□□□□□ -2.34
VSX1Q9NZR4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.41□□□□□ -2.34
VSX1Q9NZR4 SNORA68.3-201ENST00000515906 83 ntBASIC0.41□□□□□ -2.34
VSX1Q9NZR4 AC022709.1-201ENST00000615967 87 ntBASIC0.41□□□□□ -2.34
VSX1Q9NZR4 Y_RNA.355-201ENST00000365462 98 ntBASIC0.4□□□□□ -2.35
VSX1Q9NZR4 RNU6-787P-201ENST00000384032 107 ntBASIC0.4□□□□□ -2.35
VSX1Q9NZR4 MIR760-201ENST00000390220 80 ntBASIC0.4□□□□□ -2.35
VSX1Q9NZR4 RNU5B-6P-201ENST00000516765 68 ntBASIC0.4□□□□□ -2.35
VSX1Q9NZR4 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.4□□□□□ -2.35
VSX1Q9NZR4 MIR5087-201ENST00000635826 76 ntBASIC0.4□□□□□ -2.35
VSX1Q9NZR4 RNU6-824P-201ENST00000363724 104 ntBASIC0.39□□□□□ -2.35
VSX1Q9NZR4 RNU6-54P-201ENST00000365563 107 ntBASIC0.39□□□□□ -2.35
VSX1Q9NZR4 Y_RNA.371-201ENST00000365591 113 ntBASIC0.39□□□□□ -2.35
VSX1Q9NZR4 RNU6-1124P-201ENST00000384169 107 ntBASIC0.39□□□□□ -2.35
VSX1Q9NZR4 RNA5SP193-201ENST00000410353 107 ntBASIC0.39□□□□□ -2.35
VSX1Q9NZR4 AC114737.2-201ENST00000421583 173 ntBASIC0.39□□□□□ -2.35
VSX1Q9NZR4 MIR4712-201ENST00000583750 82 ntBASIC0.39□□□□□ -2.35
VSX1Q9NZR4 MIR548AD-201ENST00000584780 82 ntBASIC0.39□□□□□ -2.35
VSX1Q9NZR4 MIR6515-201ENST00000619843 57 ntBASIC0.39□□□□□ -2.35
VSX1Q9NZR4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.39□□□□□ -2.35
VSX1Q9NZR4 Y_RNA.118-201ENST00000363300 101 ntBASIC0.38□□□□□ -2.35
VSX1Q9NZR4 HMGN2P22-201ENST00000427588 175 ntBASIC0.38□□□□□ -2.35
VSX1Q9NZR4 MIR4773-1-201ENST00000637203 78 ntBASIC0.38□□□□□ -2.35
VSX1Q9NZR4 RNU6-382P-201ENST00000365181 106 ntBASIC0.37□□□□□ -2.35
VSX1Q9NZR4 RNU6-279P-201ENST00000391297 101 ntBASIC0.37□□□□□ -2.35
VSX1Q9NZR4 AC074348.1-201ENST00000426503 132 ntBASIC0.37□□□□□ -2.35
VSX1Q9NZR4 SNORD2-201ENST00000459163 69 ntBASIC0.37□□□□□ -2.35
VSX1Q9NZR4 SCARNA17.3-201ENST00000516381 125 ntBASIC0.37□□□□□ -2.35
VSX1Q9NZR4 MIR6513-201ENST00000621188 64 ntBASIC0.37□□□□□ -2.35
VSX1Q9NZR4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.36□□□□□ -2.35
VSX1Q9NZR4 RNA5SP62-201ENST00000363457 110 ntBASIC0.36□□□□□ -2.35
VSX1Q9NZR4 SNORD114-29-201ENST00000364819 70 ntBASIC0.36□□□□□ -2.35
VSX1Q9NZR4 SNORA50A-201ENST00000384225 134 ntBASIC0.36□□□□□ -2.35
VSX1Q9NZR4 MIR936-201ENST00000401264 98 ntBASIC0.36□□□□□ -2.35
VSX1Q9NZR4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
VSX1Q9NZR4 MIR20A-201ENST00000362279 71 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 Y_RNA.36-201ENST00000362602 112 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 Y_RNA.94-201ENST00000363068 106 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 RNU6-24P-201ENST00000384440 107 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 MIR598-201ENST00000384868 97 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 AC073261.1-201ENST00000429409 121 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 AL691482.2-201ENST00000457453 84 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 MIR4473-201ENST00000583731 91 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 MIR4677-201ENST00000584153 80 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 MIR4315-1-201ENST00000636800 73 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 MIR4315-2-201ENST00000640925 73 ntBASIC0.35□□□□□ -2.35
VSX1Q9NZR4 MIR103A1-201ENST00000362165 78 ntBASIC0.34□□□□□ -2.36
VSX1Q9NZR4 RNU6-228P-201ENST00000362700 106 ntBASIC0.34□□□□□ -2.36
VSX1Q9NZR4 Y_RNA.250-201ENST00000364542 110 ntBASIC0.34□□□□□ -2.36
VSX1Q9NZR4 MIR7-2-201ENST00000384970 110 ntBASIC0.34□□□□□ -2.36
VSX1Q9NZR4 MIR501-201ENST00000390204 84 ntBASIC0.34□□□□□ -2.36
VSX1Q9NZR4 MIR892B-201ENST00000401279 77 ntBASIC0.34□□□□□ -2.36
VSX1Q9NZR4 AC244090.1-201ENST00000441884 93 ntBASIC0.34□□□□□ -2.36
VSX1Q9NZR4 AC069113.3-201ENST00000521019 150 ntBASIC0.34□□□□□ -2.36
VSX1Q9NZR4 MIR4711-201ENST00000578274 70 ntBASIC0.34□□□□□ -2.36
VSX1Q9NZR4 Y_RNA.258-201ENST00000364613 105 ntBASIC0.33□□□□□ -2.36
VSX1Q9NZR4 RNU6-1039P-201ENST00000383931 107 ntBASIC0.33□□□□□ -2.36
VSX1Q9NZR4 SNORA75.1-201ENST00000391130 148 ntBASIC0.33□□□□□ -2.36
VSX1Q9NZR4 MIR1255A-201ENST00000408338 113 ntBASIC0.33□□□□□ -2.36
VSX1Q9NZR4 SNORD42B-201ENST00000458893 67 ntBASIC0.33□□□□□ -2.36
VSX1Q9NZR4 RNU6-782P-201ENST00000516852 104 ntBASIC0.33□□□□□ -2.36
VSX1Q9NZR4 AC084368.1-201ENST00000620935 65 ntBASIC0.33□□□□□ -2.36
VSX1Q9NZR4 AC243829.3-201ENST00000622177 108 ntBASIC0.33□□□□□ -2.36
VSX1Q9NZR4 RNU6-260P-201ENST00000384092 107 ntBASIC0.32□□□□□ -2.36
VSX1Q9NZR4 RNU6-154P-201ENST00000384306 106 ntBASIC0.32□□□□□ -2.36
VSX1Q9NZR4 MIR516B1-201ENST00000385211 90 ntBASIC0.32□□□□□ -2.36
VSX1Q9NZR4 MIR652-201ENST00000385278 98 ntBASIC0.32□□□□□ -2.36
VSX1Q9NZR4 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
VSX1Q9NZR4 MIR4743-201ENST00000584576 69 ntBASIC0.32□□□□□ -2.36
VSX1Q9NZR4 RNA5SP134-201ENST00000516492 96 ntBASIC0.31□□□□□ -2.36
VSX1Q9NZR4 RNA5SP395-201ENST00000516567 118 ntBASIC0.31□□□□□ -2.36
VSX1Q9NZR4 MIR3675-201ENST00000583661 73 ntBASIC0.31□□□□□ -2.36
VSX1Q9NZR4 MIR6509-201ENST00000614603 85 ntBASIC0.31□□□□□ -2.36
VSX1Q9NZR4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.3□□□□□ -2.36
VSX1Q9NZR4 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.3□□□□□ -2.36
VSX1Q9NZR4 RNU6-815P-201ENST00000384080 113 ntBASIC0.29□□□□□ -2.36
VSX1Q9NZR4 MIR876-201ENST00000401147 81 ntBASIC0.29□□□□□ -2.36
VSX1Q9NZR4 RNU6-857P-201ENST00000515893 110 ntBASIC0.29□□□□□ -2.36
VSX1Q9NZR4 RNU7-129P-201ENST00000516128 62 ntBASIC0.29□□□□□ -2.36
VSX1Q9NZR4 MIR548AE1-201ENST00000583292 70 ntBASIC0.29□□□□□ -2.36
VSX1Q9NZR4 AC243829.6-201ENST00000612652 106 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 229.4 ms