Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AL691482.2-201ENST00000457453 84 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 RNA5SP147-201ENST00000516493 109 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 AC091912.2-201ENST00000624798 167 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 RNA5SP93-201ENST00000362525 114 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 RNU6-228P-201ENST00000362700 106 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 RNU6-1227P-201ENST00000383981 107 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 AL078595.1-201ENST00000404458 226 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.626-201ENST00000411288 95 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 MIR3140-201ENST00000583685 90 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 MIR3171-201ENST00000584270 74 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 RNU5F-1-201ENST00000362507 117 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 RNU6-151P-201ENST00000364158 107 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 RNU6-474P-201ENST00000384243 107 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 MIR496-201ENST00000385226 102 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 RNU4-71P-201ENST00000516258 113 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.62□□□□□ -2.67
SCN3AQ9NY46 RNU6-238P-201ENST00000363313 106 ntBASIC-1.63□□□□□ -2.67
SCN3AQ9NY46 SNORD115-27-201ENST00000364430 82 ntBASIC-1.63□□□□□ -2.67
SCN3AQ9NY46 RNU6-80P-201ENST00000384195 107 ntBASIC-1.63□□□□□ -2.67
SCN3AQ9NY46 SNORD58.1-201ENST00000391313 66 ntBASIC-1.63□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.435-201ENST00000384095 112 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 SNORA24B-201ENST00000384176 131 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 MIR521-2-201ENST00000384818 87 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 RNU6-239P-201ENST00000390990 99 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 RNU7-88P-201ENST00000458752 63 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.190-201ENST00000363964 101 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 MIR507-201ENST00000385234 94 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 RNU6-918P-201ENST00000391219 106 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 AP002795.1-201ENST00000534879 84 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 MIR3658-201ENST00000636291 56 ntBASIC-1.64□□□□□ -2.67
SCN3AQ9NY46 MIR548H1-201ENST00000408610 102 ntBASIC-1.65□□□□□ -2.67
SCN3AQ9NY46 SNORD4B-201ENST00000459083 72 ntBASIC-1.65□□□□□ -2.67
SCN3AQ9NY46 RNU6-312P-201ENST00000364629 107 ntBASIC-1.66□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.66□□□□□ -2.67
SCN3AQ9NY46 RNA5SP292-201ENST00000390974 118 ntBASIC-1.66□□□□□ -2.67
SCN3AQ9NY46 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.66□□□□□ -2.67
SCN3AQ9NY46 SNORD127-201ENST00000458892 86 ntBASIC-1.66□□□□□ -2.67
SCN3AQ9NY46 RNU6-118P-201ENST00000516552 102 ntBASIC-1.66□□□□□ -2.67
SCN3AQ9NY46 RNU6-774P-201ENST00000363238 107 ntBASIC-1.66□□□□□ -2.68
SCN3AQ9NY46 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.66□□□□□ -2.68
SCN3AQ9NY46 SNORA7.5-201ENST00000410672 110 ntBASIC-1.66□□□□□ -2.68
SCN3AQ9NY46 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.66□□□□□ -2.68
SCN3AQ9NY46 RNA5SP86-201ENST00000390869 98 ntBASIC-1.67□□□□□ -2.68
SCN3AQ9NY46 snoU13.17-201ENST00000458802 104 ntBASIC-1.67□□□□□ -2.68
SCN3AQ9NY46 FGF7P7-201ENST00000514120 227 ntBASIC-1.67□□□□□ -2.68
SCN3AQ9NY46 U6.104-201ENST00000637979 90 ntBASIC-1.67□□□□□ -2.68
SCN3AQ9NY46 SNORA2.1-201ENST00000363089 137 ntBASIC-1.67□□□□□ -2.68
SCN3AQ9NY46 RNU6-704P-201ENST00000364162 103 ntBASIC-1.67□□□□□ -2.68
SCN3AQ9NY46 RNU2-38P-201ENST00000410856 79 ntBASIC-1.67□□□□□ -2.68
SCN3AQ9NY46 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.67□□□□□ -2.68
SCN3AQ9NY46 Y_RNA.138-201ENST00000363462 102 ntBASIC-1.68□□□□□ -2.68
SCN3AQ9NY46 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.68□□□□□ -2.68
SCN3AQ9NY46 MIR3064-201ENST00000581130 66 ntBASIC-1.68□□□□□ -2.68
SCN3AQ9NY46 SNORD45B-201ENST00000364617 72 ntBASIC-1.69□□□□□ -2.68
SCN3AQ9NY46 MIR548I1-201ENST00000408810 149 ntBASIC-1.69□□□□□ -2.68
SCN3AQ9NY46 RNU6-980P-201ENST00000516925 103 ntBASIC-1.69□□□□□ -2.68
SCN3AQ9NY46 RNU5E-3P-201ENST00000515913 68 ntBASIC-1.69□□□□□ -2.68
SCN3AQ9NY46 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.7□□□□□ -2.68
SCN3AQ9NY46 AC108019.1-201ENST00000512540 175 ntBASIC-1.7□□□□□ -2.68
SCN3AQ9NY46 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.7□□□□□ -2.68
SCN3AQ9NY46 RNU7-121P-201ENST00000516604 62 ntBASIC-1.7□□□□□ -2.68
SCN3AQ9NY46 AC006254.2-201ENST00000603259 279 ntBASIC-1.7□□□□□ -2.68
SCN3AQ9NY46 SNORA33.2-201ENST00000365413 134 ntBASIC-1.71□□□□□ -2.68
SCN3AQ9NY46 Y_RNA.396-201ENST00000383949 103 ntBASIC-1.71□□□□□ -2.68
SCN3AQ9NY46 SNORD54-201ENST00000459159 67 ntBASIC-1.71□□□□□ -2.68
SCN3AQ9NY46 RNU6-1238P-201ENST00000517215 102 ntBASIC-1.71□□□□□ -2.68
SCN3AQ9NY46 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.71□□□□□ -2.68
SCN3AQ9NY46 RNU6-382P-201ENST00000365181 106 ntBASIC-1.71□□□□□ -2.68
SCN3AQ9NY46 MIR4439-201ENST00000583746 80 ntBASIC-1.71□□□□□ -2.68
SCN3AQ9NY46 RNA5SP26-201ENST00000362406 119 ntBASIC-1.72□□□□□ -2.68
SCN3AQ9NY46 RNY1P11-201ENST00000363759 113 ntBASIC-1.72□□□□□ -2.68
SCN3AQ9NY46 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.72□□□□□ -2.68
SCN3AQ9NY46 MIR4756-201ENST00000577874 78 ntBASIC-1.72□□□□□ -2.68
SCN3AQ9NY46 MIR3139-201ENST00000579145 76 ntBASIC-1.72□□□□□ -2.68
SCN3AQ9NY46 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.73□□□□□ -2.69
SCN3AQ9NY46 SNORD115-22-201ENST00000364456 82 ntBASIC-1.73□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.73□□□□□ -2.69
SCN3AQ9NY46 RNU6-460P-201ENST00000391158 108 ntBASIC-1.73□□□□□ -2.69
SCN3AQ9NY46 MIR513C-201ENST00000401352 84 ntBASIC-1.73□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.73□□□□□ -2.69
SCN3AQ9NY46 MIR8062-201ENST00000621515 85 ntBASIC-1.73□□□□□ -2.69
SCN3AQ9NY46 MIR3613-201ENST00000579844 87 ntBASIC-1.73□□□□□ -2.69
SCN3AQ9NY46 MTND4P29-201ENST00000503122 1372 ntBASIC-1.73□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.74□□□□□ -2.69
SCN3AQ9NY46 MTND3P2-201ENST00000438452 342 ntBASIC-1.74□□□□□ -2.69
SCN3AQ9NY46 RNU6-681P-201ENST00000364012 104 ntBASIC-1.74□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.350-201ENST00000365409 98 ntBASIC-1.74□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.512-201ENST00000384518 102 ntBASIC-1.74□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.75□□□□□ -2.69
SCN3AQ9NY46 Y_RNA.356-201ENST00000365475 113 ntBASIC-1.75□□□□□ -2.69
SCN3AQ9NY46 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.75□□□□□ -2.69
SCN3AQ9NY46 RNU6-816P-201ENST00000390914 107 ntBASIC-1.75□□□□□ -2.69
SCN3AQ9NY46 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.75□□□□□ -2.69
SCN3AQ9NY46 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.75□□□□□ -2.69
SCN3AQ9NY46 MIR1263-201ENST00000408324 86 ntBASIC-1.75□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 203.8 ms