Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-274P-201ENST00000459566 107 ntBASIC1.03□□□□□ -2.24
CCDC87Q9NVE4 MIR7107-201ENST00000611489 80 ntBASIC1.03□□□□□ -2.24
CCDC87Q9NVE4 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.03□□□□□ -2.24
CCDC87Q9NVE4 RNU6-495P-201ENST00000362995 107 ntBASIC1.02□□□□□ -2.25
CCDC87Q9NVE4 PSMC1P5-201ENST00000512850 177 ntBASIC1.02□□□□□ -2.25
CCDC87Q9NVE4 AC069503.3-201ENST00000618674 145 ntBASIC1.02□□□□□ -2.25
CCDC87Q9NVE4 AC092634.7-201ENST00000621022 103 ntBASIC1.02□□□□□ -2.25
CCDC87Q9NVE4 RNU6-1187P-201ENST00000364771 110 ntBASIC1.01□□□□□ -2.25
CCDC87Q9NVE4 Y_RNA.681-201ENST00000516445 113 ntBASIC1.01□□□□□ -2.25
CCDC87Q9NVE4 RNA5SP330-201ENST00000517096 96 ntBASIC1.01□□□□□ -2.25
CCDC87Q9NVE4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
CCDC87Q9NVE4 MIR6835-201ENST00000621552 64 ntBASIC1.01□□□□□ -2.25
CCDC87Q9NVE4 RNA5SP517-201ENST00000364724 117 ntBASIC1□□□□□ -2.25
CCDC87Q9NVE4 RNU6V-201ENST00000384105 107 ntBASIC1□□□□□ -2.25
CCDC87Q9NVE4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1□□□□□ -2.25
CCDC87Q9NVE4 SCARNA18B-201ENST00000458806 135 ntBASIC1□□□□□ -2.25
CCDC87Q9NVE4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1□□□□□ -2.25
CCDC87Q9NVE4 MIR4484-201ENST00000582855 83 ntBASIC1□□□□□ -2.25
CCDC87Q9NVE4 MIR4773-1-201ENST00000637203 78 ntBASIC1□□□□□ -2.25
CCDC87Q9NVE4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.99□□□□□ -2.25
CCDC87Q9NVE4 RNU6-382P-201ENST00000365181 106 ntBASIC0.99□□□□□ -2.25
CCDC87Q9NVE4 RNU6-154P-201ENST00000384306 106 ntBASIC0.99□□□□□ -2.25
CCDC87Q9NVE4 MIR508-201ENST00000384857 115 ntBASIC0.99□□□□□ -2.25
CCDC87Q9NVE4 RNA5SP484-201ENST00000458857 111 ntBASIC0.99□□□□□ -2.25
CCDC87Q9NVE4 Y_RNA.68-201ENST00000362881 102 ntBASIC0.98□□□□□ -2.25
CCDC87Q9NVE4 Y_RNA.545-201ENST00000384652 105 ntBASIC0.98□□□□□ -2.25
CCDC87Q9NVE4 SNORA40.8-201ENST00000411034 126 ntBASIC0.98□□□□□ -2.25
CCDC87Q9NVE4 RNU6-351P-201ENST00000516097 100 ntBASIC0.98□□□□□ -2.25
CCDC87Q9NVE4 SNORD114-2-201ENST00000363953 78 ntBASIC0.97□□□□□ -2.25
CCDC87Q9NVE4 SNORD114-4-201ENST00000363962 75 ntBASIC0.97□□□□□ -2.25
CCDC87Q9NVE4 Y_RNA.258-201ENST00000364613 105 ntBASIC0.97□□□□□ -2.25
CCDC87Q9NVE4 SNORA8.1-201ENST00000384250 140 ntBASIC0.97□□□□□ -2.25
CCDC87Q9NVE4 RNU6-411P-201ENST00000384451 107 ntBASIC0.97□□□□□ -2.25
CCDC87Q9NVE4 AL109933.3-201ENST00000619095 188 ntBASIC0.97□□□□□ -2.25
CCDC87Q9NVE4 SNORD118-201ENST00000363593 134 ntBASIC0.96□□□□□ -2.26
CCDC87Q9NVE4 RNY1P8-201ENST00000383970 114 ntBASIC0.96□□□□□ -2.26
CCDC87Q9NVE4 SNORD71-201ENST00000411292 86 ntBASIC0.96□□□□□ -2.26
CCDC87Q9NVE4 RPL39P28-201ENST00000465655 155 ntBASIC0.96□□□□□ -2.26
CCDC87Q9NVE4 NAMPTP3-201ENST00000569273 224 ntBASIC0.96□□□□□ -2.26
CCDC87Q9NVE4 MIR5706-201ENST00000579841 80 ntBASIC0.96□□□□□ -2.26
CCDC87Q9NVE4 MIR3675-201ENST00000583661 73 ntBASIC0.96□□□□□ -2.26
CCDC87Q9NVE4 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.96□□□□□ -2.26
CCDC87Q9NVE4 RNU6-54P-201ENST00000365563 107 ntBASIC0.95□□□□□ -2.26
CCDC87Q9NVE4 MIR4653-201ENST00000585107 83 ntBASIC0.95□□□□□ -2.26
CCDC87Q9NVE4 MIR6866-201ENST00000638146 69 ntBASIC0.95□□□□□ -2.26
CCDC87Q9NVE4 SNORD110-201ENST00000408189 75 ntBASIC0.94□□□□□ -2.26
CCDC87Q9NVE4 RNA5SP193-201ENST00000410353 107 ntBASIC0.94□□□□□ -2.26
CCDC87Q9NVE4 AC006210.1-201ENST00000424882 111 ntBASIC0.94□□□□□ -2.26
CCDC87Q9NVE4 AL691482.2-201ENST00000457453 84 ntBASIC0.94□□□□□ -2.26
CCDC87Q9NVE4 RNU6-70P-201ENST00000516438 60 ntBASIC0.94□□□□□ -2.26
CCDC87Q9NVE4 MIR4711-201ENST00000578274 70 ntBASIC0.94□□□□□ -2.26
CCDC87Q9NVE4 MIR8087-201ENST00000612745 78 ntBASIC0.94□□□□□ -2.26
CCDC87Q9NVE4 MIR3134-201ENST00000579433 74 ntBASIC0.93□□□□□ -2.26
CCDC87Q9NVE4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC87Q9NVE4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
CCDC87Q9NVE4 RNU6-848P-201ENST00000515948 107 ntBASIC0.92□□□□□ -2.26
CCDC87Q9NVE4 RNU6-617P-201ENST00000516147 107 ntBASIC0.92□□□□□ -2.26
CCDC87Q9NVE4 RNU6-473P-201ENST00000516164 107 ntBASIC0.92□□□□□ -2.26
CCDC87Q9NVE4 RNU6-1049P-201ENST00000516414 107 ntBASIC0.92□□□□□ -2.26
CCDC87Q9NVE4 Y_RNA.788-201ENST00000622394 112 ntBASIC0.92□□□□□ -2.26
CCDC87Q9NVE4 RNA5SP347-201ENST00000362445 119 ntBASIC0.91□□□□□ -2.26
CCDC87Q9NVE4 MIR518A1-201ENST00000385068 85 ntBASIC0.91□□□□□ -2.26
CCDC87Q9NVE4 MIR889-201ENST00000401280 79 ntBASIC0.91□□□□□ -2.26
CCDC87Q9NVE4 MIR330-201ENST00000362196 94 ntBASIC0.9□□□□□ -2.27
CCDC87Q9NVE4 RNA5SP257-201ENST00000363023 116 ntBASIC0.9□□□□□ -2.27
CCDC87Q9NVE4 RNU6-1039P-201ENST00000383931 107 ntBASIC0.9□□□□□ -2.27
CCDC87Q9NVE4 RNA5SP121-201ENST00000516537 101 ntBASIC0.9□□□□□ -2.27
CCDC87Q9NVE4 RNU5B-6P-201ENST00000516765 68 ntBASIC0.9□□□□□ -2.27
CCDC87Q9NVE4 RNU6-330P-201ENST00000363015 107 ntBASIC0.89□□□□□ -2.27
CCDC87Q9NVE4 SNORA25.18-201ENST00000607153 114 ntBASIC0.89□□□□□ -2.27
CCDC87Q9NVE4 U7.6-201ENST00000610841 64 ntBASIC0.89□□□□□ -2.27
CCDC87Q9NVE4 Y_RNA.407-201ENST00000383986 113 ntBASIC0.88□□□□□ -2.27
CCDC87Q9NVE4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.88□□□□□ -2.27
CCDC87Q9NVE4 RNU6-863P-201ENST00000515989 104 ntBASIC0.88□□□□□ -2.27
CCDC87Q9NVE4 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.88□□□□□ -2.27
CCDC87Q9NVE4 MIR146A-201ENST00000385201 99 ntBASIC0.87□□□□□ -2.27
CCDC87Q9NVE4 RNU6-587P-201ENST00000391282 106 ntBASIC0.87□□□□□ -2.27
CCDC87Q9NVE4 AC069271.1-201ENST00000445577 156 ntBASIC0.87□□□□□ -2.27
CCDC87Q9NVE4 SNORD42B-201ENST00000458893 67 ntBASIC0.87□□□□□ -2.27
CCDC87Q9NVE4 RNU6-871P-201ENST00000516122 100 ntBASIC0.87□□□□□ -2.27
CCDC87Q9NVE4 MIR6509-201ENST00000614603 85 ntBASIC0.87□□□□□ -2.27
CCDC87Q9NVE4 AC243829.3-201ENST00000622177 108 ntBASIC0.87□□□□□ -2.27
CCDC87Q9NVE4 Y_RNA.565-201ENST00000384719 101 ntBASIC0.86□□□□□ -2.27
CCDC87Q9NVE4 AC098934.3-201ENST00000430450 190 ntBASIC0.86□□□□□ -2.27
CCDC87Q9NVE4 AC018659.1-201ENST00000551083 169 ntBASIC0.86□□□□□ -2.27
CCDC87Q9NVE4 MIR8053-201ENST00000613344 75 ntBASIC0.86□□□□□ -2.27
CCDC87Q9NVE4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
CCDC87Q9NVE4 SNORA2A-201ENST00000383885 135 ntBASIC0.85□□□□□ -2.27
CCDC87Q9NVE4 RNU6-260P-201ENST00000384092 107 ntBASIC0.84□□□□□ -2.27
CCDC87Q9NVE4 AC073261.1-201ENST00000429409 121 ntBASIC0.84□□□□□ -2.27
CCDC87Q9NVE4 RNU6-687P-201ENST00000516443 89 ntBASIC0.84□□□□□ -2.27
CCDC87Q9NVE4 MIR4752-201ENST00000579672 72 ntBASIC0.84□□□□□ -2.27
CCDC87Q9NVE4 SNORA70.25-201ENST00000612741 95 ntBASIC0.84□□□□□ -2.27
CCDC87Q9NVE4 RNU6-1241P-201ENST00000384536 107 ntBASIC0.83□□□□□ -2.28
CCDC87Q9NVE4 MIR154-201ENST00000385243 84 ntBASIC0.83□□□□□ -2.28
CCDC87Q9NVE4 RNU6-523P-201ENST00000516304 54 ntBASIC0.83□□□□□ -2.28
CCDC87Q9NVE4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
CCDC87Q9NVE4 MIR1197-201ENST00000408818 88 ntBASIC0.82□□□□□ -2.28
CCDC87Q9NVE4 RNU6-1015P-201ENST00000517121 99 ntBASIC0.82□□□□□ -2.28
CCDC87Q9NVE4 RNU1-29P-201ENST00000606574 126 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 181.5 ms