Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 SNORD77.2-201ENST00000391045 68 ntBASIC0.5□□□□□ -2.33
PCIF1Q9H4Z3 AC114737.2-201ENST00000421583 173 ntBASIC0.5□□□□□ -2.33
PCIF1Q9H4Z3 MIR1273G-201ENST00000577677 100 ntBASIC0.5□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-478P-201ENST00000363904 110 ntBASIC0.49□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-573P-201ENST00000383938 106 ntBASIC0.49□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-848P-201ENST00000515948 107 ntBASIC0.49□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-617P-201ENST00000516147 107 ntBASIC0.49□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-473P-201ENST00000516164 107 ntBASIC0.49□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-1049P-201ENST00000516414 107 ntBASIC0.49□□□□□ -2.33
PCIF1Q9H4Z3 AC243829.3-201ENST00000622177 108 ntBASIC0.49□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-824P-201ENST00000363724 104 ntBASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 RNA5SP325-201ENST00000363756 130 ntBASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-787P-201ENST00000384032 107 ntBASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 Y_RNA.437-201ENST00000384113 113 ntBASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 MIR501-201ENST00000390204 84 ntBASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-129P-201ENST00000391022 107 ntBASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 RNA5SP193-201ENST00000410353 107 ntBASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 RNU6-557P-201ENST00000516842 110 ntBASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 MIR4666B-201ENST00000578142 81 ntBASIC0.48□□□□□ -2.33
PCIF1Q9H4Z3 AC097510.1-201ENST00000510945 133 ntBASIC0.47□□□□□ -2.33
PCIF1Q9H4Z3 RNU7-129P-201ENST00000516128 62 ntBASIC0.47□□□□□ -2.33
PCIF1Q9H4Z3 MIR548AE1-201ENST00000583292 70 ntBASIC0.47□□□□□ -2.33
PCIF1Q9H4Z3 RNA5SP128-201ENST00000365305 116 ntBASIC0.46□□□□□ -2.34
PCIF1Q9H4Z3 SNORA50A-201ENST00000384225 134 ntBASIC0.46□□□□□ -2.34
PCIF1Q9H4Z3 Y_RNA.660-201ENST00000516002 120 ntBASIC0.46□□□□□ -2.34
PCIF1Q9H4Z3 MIR924-201ENST00000638017 53 ntBASIC0.46□□□□□ -2.34
PCIF1Q9H4Z3 RNU6-495P-201ENST00000362995 107 ntBASIC0.45□□□□□ -2.34
PCIF1Q9H4Z3 Y_RNA.125-201ENST00000363371 111 ntBASIC0.45□□□□□ -2.34
PCIF1Q9H4Z3 RNU6-652P-201ENST00000365488 107 ntBASIC0.45□□□□□ -2.34
PCIF1Q9H4Z3 SNORD42B-201ENST00000458893 67 ntBASIC0.45□□□□□ -2.34
PCIF1Q9H4Z3 U6.81-201ENST00000612550 106 ntBASIC0.45□□□□□ -2.34
PCIF1Q9H4Z3 Y_RNA.264-201ENST00000364665 102 ntBASIC0.44□□□□□ -2.34
PCIF1Q9H4Z3 RNU6-382P-201ENST00000365181 106 ntBASIC0.44□□□□□ -2.34
PCIF1Q9H4Z3 Y_RNA.407-201ENST00000383986 113 ntBASIC0.44□□□□□ -2.34
PCIF1Q9H4Z3 RNU6-815P-201ENST00000384080 113 ntBASIC0.44□□□□□ -2.34
PCIF1Q9H4Z3 SNORD75.2-201ENST00000408784 58 ntBASIC0.44□□□□□ -2.34
PCIF1Q9H4Z3 AC073261.1-201ENST00000429409 121 ntBASIC0.44□□□□□ -2.34
PCIF1Q9H4Z3 SNORA72.7-201ENST00000516349 94 ntBASIC0.44□□□□□ -2.34
PCIF1Q9H4Z3 U7.6-201ENST00000610841 64 ntBASIC0.44□□□□□ -2.34
PCIF1Q9H4Z3 AC243829.6-201ENST00000612652 106 ntBASIC0.44□□□□□ -2.34
PCIF1Q9H4Z3 MIRLET7A1-201ENST00000362295 80 ntBASIC0.43□□□□□ -2.34
PCIF1Q9H4Z3 RNA5SP62-201ENST00000363457 110 ntBASIC0.43□□□□□ -2.34
PCIF1Q9H4Z3 Y_RNA.12-201ENST00000362393 112 ntBASIC0.42□□□□□ -2.34
PCIF1Q9H4Z3 RNU6-686P-201ENST00000364839 107 ntBASIC0.42□□□□□ -2.34
PCIF1Q9H4Z3 Y_RNA.313-201ENST00000365095 103 ntBASIC0.42□□□□□ -2.34
PCIF1Q9H4Z3 Y_RNA.371-201ENST00000365591 113 ntBASIC0.42□□□□□ -2.34
PCIF1Q9H4Z3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.42□□□□□ -2.34
PCIF1Q9H4Z3 MIR4712-201ENST00000583750 82 ntBASIC0.42□□□□□ -2.34
PCIF1Q9H4Z3 MIR1245B-201ENST00000636115 69 ntBASIC0.42□□□□□ -2.34
PCIF1Q9H4Z3 MIR499B-201ENST00000636498 73 ntBASIC0.42□□□□□ -2.34
PCIF1Q9H4Z3 MIR4773-1-201ENST00000637203 78 ntBASIC0.42□□□□□ -2.34
PCIF1Q9H4Z3 SNORA9.1-201ENST00000362412 131 ntBASIC0.41□□□□□ -2.34
PCIF1Q9H4Z3 RNA5SP457-201ENST00000363657 124 ntBASIC0.41□□□□□ -2.34
PCIF1Q9H4Z3 Y_RNA.219-201ENST00000364232 113 ntBASIC0.41□□□□□ -2.34
PCIF1Q9H4Z3 RNU7-24P-201ENST00000458867 62 ntBASIC0.41□□□□□ -2.34
PCIF1Q9H4Z3 MIR4677-201ENST00000584153 80 ntBASIC0.41□□□□□ -2.34
PCIF1Q9H4Z3 MIR548AD-201ENST00000584780 82 ntBASIC0.41□□□□□ -2.34
PCIF1Q9H4Z3 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.41□□□□□ -2.34
PCIF1Q9H4Z3 MIR3202-2-201ENST00000635980 79 ntBASIC0.41□□□□□ -2.34
PCIF1Q9H4Z3 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.41□□□□□ -2.34
PCIF1Q9H4Z3 AC090625.1-201ENST00000357130 210 ntBASIC0.4□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-315P-201ENST00000362666 107 ntBASIC0.4□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-340P-201ENST00000364005 107 ntBASIC0.4□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.4□□□□□ -2.35
PCIF1Q9H4Z3 Y_RNA.606-201ENST00000410579 103 ntBASIC0.4□□□□□ -2.35
PCIF1Q9H4Z3 MIR330-201ENST00000362196 94 ntBASIC0.39□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-228P-201ENST00000362700 106 ntBASIC0.39□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-1124P-201ENST00000384169 107 ntBASIC0.39□□□□□ -2.35
PCIF1Q9H4Z3 Y_RNA.532-201ENST00000384590 113 ntBASIC0.39□□□□□ -2.35
PCIF1Q9H4Z3 AC108740.1-201ENST00000498629 225 ntBASIC0.39□□□□□ -2.35
PCIF1Q9H4Z3 AC069113.3-201ENST00000521019 150 ntBASIC0.39□□□□□ -2.35
PCIF1Q9H4Z3 YWHAEP3-201ENST00000582767 121 ntBASIC0.39□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-154P-201ENST00000384306 106 ntBASIC0.38□□□□□ -2.35
PCIF1Q9H4Z3 MIR652-201ENST00000385278 98 ntBASIC0.38□□□□□ -2.35
PCIF1Q9H4Z3 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.38□□□□□ -2.35
PCIF1Q9H4Z3 Y_RNA.94-201ENST00000363068 106 ntBASIC0.37□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-127P-201ENST00000390897 107 ntBASIC0.37□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-274P-201ENST00000459566 107 ntBASIC0.37□□□□□ -2.35
PCIF1Q9H4Z3 uc_338.10-201ENST00000621872 182 ntBASIC0.37□□□□□ -2.35
PCIF1Q9H4Z3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
PCIF1Q9H4Z3 MIR516B1-201ENST00000385211 90 ntBASIC0.36□□□□□ -2.35
PCIF1Q9H4Z3 SNORD78.1-201ENST00000390866 65 ntBASIC0.35□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-303P-201ENST00000517091 106 ntBASIC0.35□□□□□ -2.35
PCIF1Q9H4Z3 RNA5SP330-201ENST00000517096 96 ntBASIC0.35□□□□□ -2.35
PCIF1Q9H4Z3 MIR8087-201ENST00000612745 78 ntBASIC0.35□□□□□ -2.35
PCIF1Q9H4Z3 RNU6-681P-201ENST00000364012 104 ntBASIC0.34□□□□□ -2.36
PCIF1Q9H4Z3 SCARNA17.3-201ENST00000516381 125 ntBASIC0.34□□□□□ -2.36
PCIF1Q9H4Z3 MIR3925-201ENST00000584674 77 ntBASIC0.34□□□□□ -2.36
PCIF1Q9H4Z3 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
PCIF1Q9H4Z3 Y_RNA.115-201ENST00000363272 98 ntBASIC0.33□□□□□ -2.36
PCIF1Q9H4Z3 SNORD114-4-201ENST00000363962 75 ntBASIC0.33□□□□□ -2.36
PCIF1Q9H4Z3 MIR1255A-201ENST00000408338 113 ntBASIC0.33□□□□□ -2.36
PCIF1Q9H4Z3 RNU6-990P-201ENST00000364385 104 ntBASIC0.32□□□□□ -2.36
PCIF1Q9H4Z3 RNU6-1039P-201ENST00000383931 107 ntBASIC0.32□□□□□ -2.36
PCIF1Q9H4Z3 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
PCIF1Q9H4Z3 RNU7-188P-201ENST00000517063 64 ntBASIC0.32□□□□□ -2.36
PCIF1Q9H4Z3 AC084368.1-201ENST00000620935 65 ntBASIC0.32□□□□□ -2.36
PCIF1Q9H4Z3 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.31□□□□□ -2.36
PCIF1Q9H4Z3 MIR643-201ENST00000385267 97 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 226.3 ms