Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR590-201ENST00000385008 97 ntBASIC-0.32□□□□□ -2.46
CCDC3Q9BQI4 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.32□□□□□ -2.46
CCDC3Q9BQI4 AP001180.6-201ENST00000584918 159 ntBASIC-0.32□□□□□ -2.46
CCDC3Q9BQI4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.32□□□□□ -2.46
CCDC3Q9BQI4 RNU6-766P-201ENST00000362478 107 ntBASIC-0.33□□□□□ -2.46
CCDC3Q9BQI4 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.33□□□□□ -2.46
CCDC3Q9BQI4 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.33□□□□□ -2.46
CCDC3Q9BQI4 AC244250.2-201ENST00000418731 148 ntBASIC-0.33□□□□□ -2.46
CCDC3Q9BQI4 MIR4263-201ENST00000584745 83 ntBASIC-0.33□□□□□ -2.46
CCDC3Q9BQI4 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.34□□□□□ -2.46
CCDC3Q9BQI4 RNY4P3-201ENST00000365254 95 ntBASIC-0.34□□□□□ -2.46
CCDC3Q9BQI4 RNU6-789P-201ENST00000517105 102 ntBASIC-0.34□□□□□ -2.46
CCDC3Q9BQI4 MIR4493-201ENST00000584016 73 ntBASIC-0.34□□□□□ -2.46
CCDC3Q9BQI4 RNU6-54P-201ENST00000365563 107 ntBASIC-0.35□□□□□ -2.47
CCDC3Q9BQI4 SNORA24B-201ENST00000384176 131 ntBASIC-0.35□□□□□ -2.47
CCDC3Q9BQI4 RNA5SP300-201ENST00000391197 107 ntBASIC-0.35□□□□□ -2.47
CCDC3Q9BQI4 RNU7-24P-201ENST00000458867 62 ntBASIC-0.35□□□□□ -2.47
CCDC3Q9BQI4 MIR4645-201ENST00000583158 77 ntBASIC-0.35□□□□□ -2.47
CCDC3Q9BQI4 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.36□□□□□ -2.47
CCDC3Q9BQI4 RNU6-495P-201ENST00000362995 107 ntBASIC-0.37□□□□□ -2.47
CCDC3Q9BQI4 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.37□□□□□ -2.47
CCDC3Q9BQI4 FGF7P7-201ENST00000514120 227 ntBASIC-0.37□□□□□ -2.47
CCDC3Q9BQI4 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.38□□□□□ -2.47
CCDC3Q9BQI4 Y_RNA.629-201ENST00000411368 105 ntBASIC-0.38□□□□□ -2.47
CCDC3Q9BQI4 Z95118.1-201ENST00000421372 247 ntBASIC-0.38□□□□□ -2.47
CCDC3Q9BQI4 SNORA19-201ENST00000384737 128 ntBASIC-0.39□□□□□ -2.47
CCDC3Q9BQI4 MTATP6P29-201ENST00000415057 132 ntBASIC-0.39□□□□□ -2.47
CCDC3Q9BQI4 SNORD42B-201ENST00000458893 67 ntBASIC-0.39□□□□□ -2.47
CCDC3Q9BQI4 SNORA18.5-201ENST00000516616 101 ntBASIC-0.39□□□□□ -2.47
CCDC3Q9BQI4 MIR2052-201ENST00000636055 55 ntBASIC-0.39□□□□□ -2.47
CCDC3Q9BQI4 SNORD114-28-201ENST00000363610 72 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 RNU6-900P-201ENST00000384498 102 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 RNA5SP292-201ENST00000390974 118 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 RNU7-61P-201ENST00000515897 61 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 RNU6-406P-201ENST00000516470 107 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 RNU6-719P-201ENST00000516671 104 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 AL590491.3-201ENST00000610731 82 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 MIR4788-201ENST00000639104 80 ntBASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.4□□□□□ -2.47
CCDC3Q9BQI4 RNU6-755P-201ENST00000364400 103 ntBASIC-0.41□□□□□ -2.48
CCDC3Q9BQI4 RNU6-1081P-201ENST00000384537 107 ntBASIC-0.41□□□□□ -2.48
CCDC3Q9BQI4 SNORA49-201ENST00000386157 136 ntBASIC-0.41□□□□□ -2.48
CCDC3Q9BQI4 RNU6-758P-201ENST00000516292 89 ntBASIC-0.41□□□□□ -2.48
CCDC3Q9BQI4 RNU6-762P-201ENST00000517107 102 ntBASIC-0.41□□□□□ -2.48
CCDC3Q9BQI4 MIR3140-201ENST00000583685 90 ntBASIC-0.41□□□□□ -2.48
CCDC3Q9BQI4 MIR101-1-201ENST00000362265 75 ntBASIC-0.42□□□□□ -2.48
CCDC3Q9BQI4 RNY4P18-201ENST00000391107 89 ntBASIC-0.42□□□□□ -2.48
CCDC3Q9BQI4 MIR548E-201ENST00000408287 88 ntBASIC-0.42□□□□□ -2.48
CCDC3Q9BQI4 SNORD75.2-201ENST00000408784 58 ntBASIC-0.42□□□□□ -2.48
CCDC3Q9BQI4 RNA5SP25-201ENST00000410815 110 ntBASIC-0.42□□□□□ -2.48
CCDC3Q9BQI4 MTATP8P2-201ENST00000435212 202 ntBASIC-0.42□□□□□ -2.48
CCDC3Q9BQI4 RNU6-109P-201ENST00000516364 107 ntBASIC-0.42□□□□□ -2.48
CCDC3Q9BQI4 RNU6-184P-201ENST00000516514 107 ntBASIC-0.42□□□□□ -2.48
CCDC3Q9BQI4 AC026421.1-201ENST00000519101 163 ntBASIC-0.42□□□□□ -2.48
CCDC3Q9BQI4 SNORD115-25-201ENST00000362619 82 ntBASIC-0.43□□□□□ -2.48
CCDC3Q9BQI4 SNORD14C-201ENST00000365382 88 ntBASIC-0.43□□□□□ -2.48
CCDC3Q9BQI4 RNU6-455P-201ENST00000384681 107 ntBASIC-0.43□□□□□ -2.48
CCDC3Q9BQI4 MIR9-2-201ENST00000384838 87 ntBASIC-0.43□□□□□ -2.48
CCDC3Q9BQI4 AL031737.1-201ENST00000450125 223 ntBASIC-0.43□□□□□ -2.48
CCDC3Q9BQI4 AP000676.1-201ENST00000533307 52 ntBASIC-0.43□□□□□ -2.48
CCDC3Q9BQI4 AC145423.2-201ENST00000610631 239 ntBASIC-0.43□□□□□ -2.48
CCDC3Q9BQI4 U7.3-201ENST00000616123 62 ntBASIC-0.43□□□□□ -2.48
CCDC3Q9BQI4 MIR604-201ENST00000384880 94 ntBASIC-0.44□□□□□ -2.48
CCDC3Q9BQI4 MIR1236-201ENST00000408340 102 ntBASIC-0.44□□□□□ -2.48
CCDC3Q9BQI4 AL606753.1-201ENST00000427435 87 ntBASIC-0.44□□□□□ -2.48
CCDC3Q9BQI4 RNU6-320P-201ENST00000516511 106 ntBASIC-0.44□□□□□ -2.48
CCDC3Q9BQI4 SNORA40.17-201ENST00000517256 115 ntBASIC-0.44□□□□□ -2.48
CCDC3Q9BQI4 SNORD114-11-201ENST00000363738 75 ntBASIC-0.45□□□□□ -2.48
CCDC3Q9BQI4 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.45□□□□□ -2.48
CCDC3Q9BQI4 MIR582-201ENST00000365731 98 ntBASIC-0.45□□□□□ -2.48
CCDC3Q9BQI4 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.45□□□□□ -2.48
CCDC3Q9BQI4 RNU7-55P-201ENST00000459426 62 ntBASIC-0.45□□□□□ -2.48
CCDC3Q9BQI4 AC097510.1-201ENST00000510945 133 ntBASIC-0.45□□□□□ -2.48
CCDC3Q9BQI4 MIR8064-201ENST00000612863 90 ntBASIC-0.45□□□□□ -2.48
CCDC3Q9BQI4 AC006254.2-201ENST00000603259 279 ntBASIC-0.46□□□□□ -2.48
CCDC3Q9BQI4 RNU5F-1-201ENST00000362507 117 ntBASIC-0.47□□□□□ -2.48
CCDC3Q9BQI4 RNU4-32P-201ENST00000363404 141 ntBASIC-0.47□□□□□ -2.48
CCDC3Q9BQI4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.47□□□□□ -2.48
CCDC3Q9BQI4 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.47□□□□□ -2.48
CCDC3Q9BQI4 RNA5SP368-201ENST00000364298 116 ntBASIC-0.48□□□□□ -2.49
CCDC3Q9BQI4 SNORD126-201ENST00000459475 77 ntBASIC-0.48□□□□□ -2.49
CCDC3Q9BQI4 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.48□□□□□ -2.49
CCDC3Q9BQI4 RNA5SP66-201ENST00000517178 101 ntBASIC-0.48□□□□□ -2.49
CCDC3Q9BQI4 MIR4796-201ENST00000580742 81 ntBASIC-0.48□□□□□ -2.49
CCDC3Q9BQI4 AC108676.2-201ENST00000605225 163 ntBASIC-0.48□□□□□ -2.49
CCDC3Q9BQI4 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.49□□□□□ -2.49
CCDC3Q9BQI4 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.49□□□□□ -2.49
CCDC3Q9BQI4 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.49□□□□□ -2.49
CCDC3Q9BQI4 SNORD90-201ENST00000391145 111 ntBASIC-0.49□□□□□ -2.49
CCDC3Q9BQI4 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.5□□□□□ -2.49
CCDC3Q9BQI4 SNORA63.6-201ENST00000364921 119 ntBASIC-0.5□□□□□ -2.49
CCDC3Q9BQI4 AP001318.4-201ENST00000616637 121 ntBASIC-0.5□□□□□ -2.49
CCDC3Q9BQI4 RNU6-502P-201ENST00000362419 108 ntBASIC-0.51□□□□□ -2.49
CCDC3Q9BQI4 MIR196A2-201ENST00000385189 110 ntBASIC-0.51□□□□□ -2.49
CCDC3Q9BQI4 AL445193.1-201ENST00000441183 141 ntBASIC-0.51□□□□□ -2.49
CCDC3Q9BQI4 SNORD95.1-201ENST00000364099 68 ntBASIC-0.52□□□□□ -2.49
CCDC3Q9BQI4 RNU6-215P-201ENST00000365169 102 ntBASIC-0.52□□□□□ -2.49
CCDC3Q9BQI4 RNA5SP451-201ENST00000410588 110 ntBASIC-0.52□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms