Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR517B-201ENST00000385102 67 ntBASIC-1.46□□□□□ -2.64
HDDC3Q8N4P3 AP000533.3-201ENST00000447704 118 ntBASIC-1.46□□□□□ -2.64
HDDC3Q8N4P3 RNA5SP180-201ENST00000516181 101 ntBASIC-1.46□□□□□ -2.64
HDDC3Q8N4P3 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 RNU6-463P-201ENST00000384340 107 ntBASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 RNU6-394P-201ENST00000410735 107 ntBASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 AL513043.2-201ENST00000573941 143 ntBASIC-1.47□□□□□ -2.64
HDDC3Q8N4P3 RNU6-832P-201ENST00000363319 107 ntBASIC-1.48□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.48□□□□□ -2.65
HDDC3Q8N4P3 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.48□□□□□ -2.65
HDDC3Q8N4P3 AC004792.1-201ENST00000614523 137 ntBASIC-1.48□□□□□ -2.65
HDDC3Q8N4P3 SNORA63.2-201ENST00000362603 126 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 RNY3P2-201ENST00000362918 102 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 MIR569-201ENST00000385228 96 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 RNU7-85P-201ENST00000458851 63 ntBASIC-1.49□□□□□ -2.65
HDDC3Q8N4P3 RNU6-804P-201ENST00000384286 107 ntBASIC-1.5□□□□□ -2.65
HDDC3Q8N4P3 MIR8068-201ENST00000618032 68 ntBASIC-1.5□□□□□ -2.65
HDDC3Q8N4P3 RNU6-379P-201ENST00000363813 104 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 RNU6-388P-201ENST00000517012 105 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 RNU6-389P-201ENST00000517048 105 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 RNU6-158P-201ENST00000517104 100 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 MIR4439-201ENST00000583746 80 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.51□□□□□ -2.65
HDDC3Q8N4P3 RNU6-132P-201ENST00000383863 107 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.398-201ENST00000383952 99 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 MIRLET7B-201ENST00000385140 83 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 MIR3144-201ENST00000579460 79 ntBASIC-1.52□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 SNORD45B-201ENST00000364617 72 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 RNU6-592P-201ENST00000411333 103 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 AC068339.1-201ENST00000526965 141 ntBASIC-1.53□□□□□ -2.65
HDDC3Q8N4P3 RNU6-495P-201ENST00000362995 107 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 SNORD114-25-201ENST00000363742 72 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 SNORD18.2-201ENST00000459604 70 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 AC021146.9-201ENST00000512503 156 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 RNA5SP470-201ENST00000516463 106 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 MIR3140-201ENST00000583685 90 ntBASIC-1.54□□□□□ -2.66
HDDC3Q8N4P3 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 MIR4679-2-201ENST00000578358 77 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 MIR3064-201ENST00000581130 66 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 AC104996.3-201ENST00000590718 94 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 AL035470.1-201ENST00000622571 220 ntBASIC-1.55□□□□□ -2.66
HDDC3Q8N4P3 RNU6-644P-201ENST00000391155 98 ntBASIC-1.56□□□□□ -2.66
HDDC3Q8N4P3 SNORD115-23-201ENST00000364461 82 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 RNU6-772P-201ENST00000516042 105 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 RNA5SP272-201ENST00000516095 111 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 U6.96-201ENST00000636425 70 ntBASIC-1.57□□□□□ -2.66
HDDC3Q8N4P3 AL157777.2-201ENST00000258070 137 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 RNU6-905P-201ENST00000384434 107 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 RNU6-337P-201ENST00000391243 106 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 RNU6-426P-201ENST00000516464 97 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 AC103810.7-201ENST00000607821 91 ntBASIC-1.58□□□□□ -2.66
HDDC3Q8N4P3 RNY4P27-201ENST00000363341 96 ntBASIC-1.59□□□□□ -2.66
HDDC3Q8N4P3 SNORA62.4-201ENST00000365504 151 ntBASIC-1.59□□□□□ -2.66
HDDC3Q8N4P3 RNU6-813P-201ENST00000384691 107 ntBASIC-1.59□□□□□ -2.66
HDDC3Q8N4P3 MIR548Z-201ENST00000584743 97 ntBASIC-1.59□□□□□ -2.66
HDDC3Q8N4P3 RNU6-990P-201ENST00000364385 104 ntBASIC-1.6□□□□□ -2.67
HDDC3Q8N4P3 SNORD75.2-201ENST00000408784 58 ntBASIC-1.6□□□□□ -2.67
HDDC3Q8N4P3 RNU6-519P-201ENST00000410590 108 ntBASIC-1.6□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.6□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.61□□□□□ -2.67
HDDC3Q8N4P3 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.61□□□□□ -2.67
HDDC3Q8N4P3 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.61□□□□□ -2.67
HDDC3Q8N4P3 RNU7-24P-201ENST00000458867 62 ntBASIC-1.62□□□□□ -2.67
HDDC3Q8N4P3 SNORD4B-201ENST00000459083 72 ntBASIC-1.62□□□□□ -2.67
HDDC3Q8N4P3 RNU6-182P-201ENST00000516970 105 ntBASIC-1.62□□□□□ -2.67
HDDC3Q8N4P3 MIR3613-201ENST00000579844 87 ntBASIC-1.63□□□□□ -2.67
HDDC3Q8N4P3 AL353621.2-201ENST00000605340 133 ntBASIC-1.63□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 MIR548A1-201ENST00000385041 97 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 MIR124-2-201ENST00000385081 109 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 MTATP6P29-201ENST00000415057 132 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 MTND4LP9-201ENST00000427694 174 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 uc_338.19-201ENST00000616808 99 ntBASIC-1.64□□□□□ -2.67
HDDC3Q8N4P3 SNORA24B-201ENST00000384176 131 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 MT-TG-201ENST00000387429 68 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 RNU6-62P-201ENST00000516526 102 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 MIR5009-201ENST00000578736 100 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 YWHAEP3-201ENST00000582767 121 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 AC006254.2-201ENST00000603259 279 ntBASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.65□□□□□ -2.67
HDDC3Q8N4P3 RNU6-208P-201ENST00000362431 107 ntBASIC-1.66□□□□□ -2.68
HDDC3Q8N4P3 SNORA40-201ENST00000388090 126 ntBASIC-1.66□□□□□ -2.68
HDDC3Q8N4P3 MTND5P41-201ENST00000517498 206 ntBASIC-1.66□□□□□ -2.68
HDDC3Q8N4P3 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.67□□□□□ -2.68
HDDC3Q8N4P3 Y_RNA.257-201ENST00000364596 102 ntBASIC-1.68□□□□□ -2.68
HDDC3Q8N4P3 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.68□□□□□ -2.68
HDDC3Q8N4P3 AC140658.3-201ENST00000567603 271 ntBASIC-1.68□□□□□ -2.68
HDDC3Q8N4P3 RNU6-274P-201ENST00000459566 107 ntBASIC-1.69□□□□□ -2.68
Retrieved 100 of 98,524 protein–RNA pairs in 189.9 ms