Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MIR96-201ENST00000362288 78 ntBASIC1.15□□□□□ -2.23
DEPDC4Q8N2C3 SNORD115-31-201ENST00000365318 82 ntBASIC1.15□□□□□ -2.23
DEPDC4Q8N2C3 RNA5SP325-201ENST00000363756 130 ntBASIC1.14□□□□□ -2.23
DEPDC4Q8N2C3 RNU1-93P-201ENST00000364704 169 ntBASIC1.14□□□□□ -2.23
DEPDC4Q8N2C3 RNU6-663P-201ENST00000391105 106 ntBASIC1.14□□□□□ -2.23
DEPDC4Q8N2C3 PVT1_3.1-201ENST00000620853 95 ntBASIC1.14□□□□□ -2.23
DEPDC4Q8N2C3 SNORA36.2-201ENST00000384004 127 ntBASIC1.13□□□□□ -2.23
DEPDC4Q8N2C3 MIR1285-1-201ENST00000408593 84 ntBASIC1.13□□□□□ -2.23
DEPDC4Q8N2C3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.13□□□□□ -2.23
DEPDC4Q8N2C3 SNORD115-22-201ENST00000364456 82 ntBASIC1.12□□□□□ -2.23
DEPDC4Q8N2C3 RNU6-260P-201ENST00000384092 107 ntBASIC1.12□□□□□ -2.23
DEPDC4Q8N2C3 RNU6-604P-201ENST00000390917 100 ntBASIC1.12□□□□□ -2.23
DEPDC4Q8N2C3 RNU6-881P-201ENST00000516813 102 ntBASIC1.12□□□□□ -2.23
DEPDC4Q8N2C3 MIR5706-201ENST00000579841 80 ntBASIC1.12□□□□□ -2.23
DEPDC4Q8N2C3 RNA5SP517-201ENST00000364724 117 ntBASIC1.11□□□□□ -2.23
DEPDC4Q8N2C3 SNORD45A-201ENST00000384512 84 ntBASIC1.11□□□□□ -2.23
DEPDC4Q8N2C3 SNORA40.6-201ENST00000391153 128 ntBASIC1.11□□□□□ -2.23
DEPDC4Q8N2C3 AC006210.1-201ENST00000424882 111 ntBASIC1.11□□□□□ -2.23
DEPDC4Q8N2C3 RNU6-1223P-201ENST00000517124 104 ntBASIC1.11□□□□□ -2.23
DEPDC4Q8N2C3 AC092634.7-201ENST00000621022 103 ntBASIC1.11□□□□□ -2.23
DEPDC4Q8N2C3 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.11□□□□□ -2.23
DEPDC4Q8N2C3 MIR520E-201ENST00000384867 87 ntBASIC1.1□□□□□ -2.23
DEPDC4Q8N2C3 MIR598-201ENST00000384868 97 ntBASIC1.1□□□□□ -2.23
DEPDC4Q8N2C3 SNORD110-201ENST00000408189 75 ntBASIC1.1□□□□□ -2.23
DEPDC4Q8N2C3 RNU5B-6P-201ENST00000516765 68 ntBASIC1.1□□□□□ -2.23
DEPDC4Q8N2C3 U6.111-201ENST00000636093 83 ntBASIC1.1□□□□□ -2.23
DEPDC4Q8N2C3 AC125388.1-201ENST00000459631 156 ntBASIC1.09□□□□□ -2.23
DEPDC4Q8N2C3 MIR151B-201ENST00000584249 96 ntBASIC1.09□□□□□ -2.23
DEPDC4Q8N2C3 MIR3657-201ENST00000584818 117 ntBASIC1.09□□□□□ -2.23
DEPDC4Q8N2C3 AC211469.2-201ENST00000605461 205 ntBASIC1.09□□□□□ -2.23
DEPDC4Q8N2C3 SNORA2.1-201ENST00000363089 137 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 SNORD113.1-201ENST00000363280 73 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 RNY1P8-201ENST00000383970 114 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 Y_RNA.407-201ENST00000383986 113 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 SNORA40.8-201ENST00000411034 126 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 ACA64.5-201ENST00000516207 127 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 AC018659.1-201ENST00000551083 169 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 MIR3660-201ENST00000584845 100 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 MIR6788-201ENST00000618842 66 ntBASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
DEPDC4Q8N2C3 RNU6-1216P-201ENST00000362590 107 ntBASIC1.07□□□□□ -2.24
DEPDC4Q8N2C3 SNORD118-201ENST00000363593 134 ntBASIC1.07□□□□□ -2.24
DEPDC4Q8N2C3 Y_RNA.250-201ENST00000364542 110 ntBASIC1.07□□□□□ -2.24
DEPDC4Q8N2C3 RNU6-800P-201ENST00000384473 103 ntBASIC1.07□□□□□ -2.24
DEPDC4Q8N2C3 MIR203A-201ENST00000384836 110 ntBASIC1.07□□□□□ -2.24
DEPDC4Q8N2C3 RPS29P1-201ENST00000465274 159 ntBASIC1.07□□□□□ -2.24
DEPDC4Q8N2C3 MIR4295-201ENST00000585286 85 ntBASIC1.06□□□□□ -2.24
DEPDC4Q8N2C3 Y_RNA.340-201ENST00000365330 92 ntBASIC1.05□□□□□ -2.24
DEPDC4Q8N2C3 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
DEPDC4Q8N2C3 AC087343.1-201ENST00000477341 475 ntBASIC1.05□□□□□ -2.24
DEPDC4Q8N2C3 RNU6-848P-201ENST00000515948 107 ntBASIC1.05□□□□□ -2.24
DEPDC4Q8N2C3 RNU6-617P-201ENST00000516147 107 ntBASIC1.05□□□□□ -2.24
DEPDC4Q8N2C3 RNU6-473P-201ENST00000516164 107 ntBASIC1.05□□□□□ -2.24
DEPDC4Q8N2C3 RNU6-1049P-201ENST00000516414 107 ntBASIC1.05□□□□□ -2.24
DEPDC4Q8N2C3 AL590095.2-201ENST00000604136 117 ntBASIC1.05□□□□□ -2.24
DEPDC4Q8N2C3 SNORD71-201ENST00000411292 86 ntBASIC1.04□□□□□ -2.24
DEPDC4Q8N2C3 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
DEPDC4Q8N2C3 RNU6-630P-201ENST00000391258 106 ntBASIC1.03□□□□□ -2.24
DEPDC4Q8N2C3 MIR548J-201ENST00000408833 112 ntBASIC1.03□□□□□ -2.24
DEPDC4Q8N2C3 MTND4LP1-201ENST00000446263 157 ntBASIC1.03□□□□□ -2.24
DEPDC4Q8N2C3 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.03□□□□□ -2.24
DEPDC4Q8N2C3 SNORD114-27-201ENST00000363766 70 ntBASIC1.02□□□□□ -2.25
DEPDC4Q8N2C3 PSMC1P5-201ENST00000512850 177 ntBASIC1.02□□□□□ -2.25
DEPDC4Q8N2C3 SCARNA17.3-201ENST00000516381 125 ntBASIC1.02□□□□□ -2.25
DEPDC4Q8N2C3 RNU1-29P-201ENST00000606574 126 ntBASIC1.02□□□□□ -2.25
DEPDC4Q8N2C3 U7.6-201ENST00000610841 64 ntBASIC1.02□□□□□ -2.25
DEPDC4Q8N2C3 SNORA70.25-201ENST00000612741 95 ntBASIC1.02□□□□□ -2.25
DEPDC4Q8N2C3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
DEPDC4Q8N2C3 Y_RNA.205-201ENST00000364128 113 ntBASIC1.01□□□□□ -2.25
DEPDC4Q8N2C3 RNU6-1187P-201ENST00000364771 110 ntBASIC1.01□□□□□ -2.25
DEPDC4Q8N2C3 Y_RNA.443-201ENST00000384135 111 ntBASIC1.01□□□□□ -2.25
DEPDC4Q8N2C3 MIR518A1-201ENST00000385068 85 ntBASIC1.01□□□□□ -2.25
DEPDC4Q8N2C3 SNORA25.18-201ENST00000607153 114 ntBASIC1.01□□□□□ -2.25
DEPDC4Q8N2C3 SNORA25.4-201ENST00000363666 124 ntBASIC1□□□□□ -2.25
DEPDC4Q8N2C3 Y_RNA.386-201ENST00000383913 105 ntBASIC1□□□□□ -2.25
DEPDC4Q8N2C3 AC069271.1-201ENST00000445577 156 ntBASIC1□□□□□ -2.25
DEPDC4Q8N2C3 SNORA40.17-201ENST00000517256 115 ntBASIC1□□□□□ -2.25
DEPDC4Q8N2C3 AC103810.9-201ENST00000606688 112 ntBASIC1□□□□□ -2.25
DEPDC4Q8N2C3 MIR6767-201ENST00000637302 66 ntBASIC1□□□□□ -2.25
DEPDC4Q8N2C3 RNU6-990P-201ENST00000364385 104 ntBASIC0.99□□□□□ -2.25
DEPDC4Q8N2C3 MIR4752-201ENST00000579672 72 ntBASIC0.99□□□□□ -2.25
DEPDC4Q8N2C3 AC005520.4-201ENST00000604337 90 ntBASIC0.99□□□□□ -2.25
DEPDC4Q8N2C3 MIR6739-201ENST00000622461 75 ntBASIC0.99□□□□□ -2.25
DEPDC4Q8N2C3 MIR652-201ENST00000385278 98 ntBASIC0.98□□□□□ -2.25
DEPDC4Q8N2C3 RNU6-982P-201ENST00000516216 102 ntBASIC0.98□□□□□ -2.25
DEPDC4Q8N2C3 MIR4473-201ENST00000583731 91 ntBASIC0.98□□□□□ -2.25
DEPDC4Q8N2C3 MIR4653-201ENST00000585107 83 ntBASIC0.98□□□□□ -2.25
DEPDC4Q8N2C3 uc_338.10-201ENST00000621872 182 ntBASIC0.98□□□□□ -2.25
DEPDC4Q8N2C3 RNU6-668P-201ENST00000364180 107 ntBASIC0.97□□□□□ -2.25
DEPDC4Q8N2C3 Y_RNA.374-201ENST00000365606 101 ntBASIC0.97□□□□□ -2.25
DEPDC4Q8N2C3 RNU6-471P-201ENST00000383944 106 ntBASIC0.97□□□□□ -2.25
DEPDC4Q8N2C3 SNORD116-24-201ENST00000384549 92 ntBASIC0.97□□□□□ -2.25
DEPDC4Q8N2C3 RPL39P28-201ENST00000465655 155 ntBASIC0.97□□□□□ -2.25
DEPDC4Q8N2C3 RNU6-863P-201ENST00000515989 104 ntBASIC0.97□□□□□ -2.25
DEPDC4Q8N2C3 MIR548AE1-201ENST00000583292 70 ntBASIC0.97□□□□□ -2.25
DEPDC4Q8N2C3 Y_RNA.125-201ENST00000363371 111 ntBASIC0.96□□□□□ -2.26
DEPDC4Q8N2C3 SNORA2A-201ENST00000383885 135 ntBASIC0.96□□□□□ -2.26
DEPDC4Q8N2C3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 227.6 ms