Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 7SK.8-201ENST00000612110 250 ntBASIC1.79□□□□□ -2.12
NPAS3Q8IXF0 7SK.11-201ENST00000615477 250 ntBASIC1.79□□□□□ -2.12
NPAS3Q8IXF0 7SK.13-201ENST00000622040 250 ntBASIC1.79□□□□□ -2.12
NPAS3Q8IXF0 AC090617.8-201ENST00000623339 167 ntBASIC1.79□□□□□ -2.12
NPAS3Q8IXF0 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
NPAS3Q8IXF0 RNU6-726P-201ENST00000364680 107 ntBASIC1.78□□□□□ -2.12
NPAS3Q8IXF0 RNU7-21P-201ENST00000459430 62 ntBASIC1.78□□□□□ -2.12
NPAS3Q8IXF0 RNU6-469P-201ENST00000516253 101 ntBASIC1.78□□□□□ -2.12
NPAS3Q8IXF0 SCARNA17.3-201ENST00000516381 125 ntBASIC1.78□□□□□ -2.12
NPAS3Q8IXF0 MIR4639-201ENST00000584938 69 ntBASIC1.78□□□□□ -2.12
NPAS3Q8IXF0 RMST_2.1-201ENST00000617263 136 ntBASIC1.78□□□□□ -2.12
NPAS3Q8IXF0 MIR579-201ENST00000385221 98 ntBASIC1.77□□□□□ -2.13
NPAS3Q8IXF0 AL021921.1-201ENST00000442774 93 ntBASIC1.77□□□□□ -2.13
NPAS3Q8IXF0 AC002350.1-201ENST00000490759 375 ntBASIC1.77□□□□□ -2.13
NPAS3Q8IXF0 MIR4287-201ENST00000579398 78 ntBASIC1.77□□□□□ -2.13
NPAS3Q8IXF0 MIR4473-201ENST00000583731 91 ntBASIC1.77□□□□□ -2.13
NPAS3Q8IXF0 AL096840.1-201ENST00000603287 93 ntBASIC1.77□□□□□ -2.13
NPAS3Q8IXF0 AC012493.3-201ENST00000604494 112 ntBASIC1.77□□□□□ -2.13
NPAS3Q8IXF0 RNU6-924P-201ENST00000362926 108 ntBASIC1.76□□□□□ -2.13
NPAS3Q8IXF0 MIR499A-201ENST00000384903 122 ntBASIC1.76□□□□□ -2.13
NPAS3Q8IXF0 RNU6-910P-201ENST00000390844 107 ntBASIC1.76□□□□□ -2.13
NPAS3Q8IXF0 MIR548E-201ENST00000408287 88 ntBASIC1.76□□□□□ -2.13
NPAS3Q8IXF0 RNU6-419P-201ENST00000517030 63 ntBASIC1.76□□□□□ -2.13
NPAS3Q8IXF0 MIR4419B-201ENST00000577260 68 ntBASIC1.76□□□□□ -2.13
NPAS3Q8IXF0 MIR548AG1-201ENST00000579932 66 ntBASIC1.76□□□□□ -2.13
NPAS3Q8IXF0 MIR4713-201ENST00000582691 75 ntBASIC1.76□□□□□ -2.13
NPAS3Q8IXF0 RNU6-246P-201ENST00000384702 107 ntBASIC1.75□□□□□ -2.13
NPAS3Q8IXF0 MIR519A2-201ENST00000384990 87 ntBASIC1.75□□□□□ -2.13
NPAS3Q8IXF0 MIR1255B2-201ENST00000408618 67 ntBASIC1.75□□□□□ -2.13
NPAS3Q8IXF0 HMGN2P19-201ENST00000425149 265 ntBASIC1.75□□□□□ -2.13
NPAS3Q8IXF0 RNU7-95P-201ENST00000459222 64 ntBASIC1.75□□□□□ -2.13
NPAS3Q8IXF0 MIR548AE1-201ENST00000583292 70 ntBASIC1.75□□□□□ -2.13
NPAS3Q8IXF0 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
NPAS3Q8IXF0 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.74□□□□□ -2.13
NPAS3Q8IXF0 MIR517C-201ENST00000385103 95 ntBASIC1.74□□□□□ -2.13
NPAS3Q8IXF0 RNU7-90P-201ENST00000459216 62 ntBASIC1.74□□□□□ -2.13
NPAS3Q8IXF0 TRMT112P2-201ENST00000512910 132 ntBASIC1.74□□□□□ -2.13
NPAS3Q8IXF0 Y_RNA.109-201ENST00000363215 102 ntBASIC1.73□□□□□ -2.13
NPAS3Q8IXF0 Y_RNA.407-201ENST00000383986 113 ntBASIC1.73□□□□□ -2.13
NPAS3Q8IXF0 MIR676-201ENST00000390702 67 ntBASIC1.73□□□□□ -2.13
NPAS3Q8IXF0 SNORA8.2-201ENST00000384372 139 ntBASIC1.72□□□□□ -2.13
NPAS3Q8IXF0 SNORA80D-201ENST00000384488 135 ntBASIC1.72□□□□□ -2.13
NPAS3Q8IXF0 MIR516B1-201ENST00000385211 90 ntBASIC1.72□□□□□ -2.13
NPAS3Q8IXF0 MIR1827-201ENST00000408549 66 ntBASIC1.72□□□□□ -2.13
NPAS3Q8IXF0 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
NPAS3Q8IXF0 SNORD18A-201ENST00000363753 72 ntBASIC1.71□□□□□ -2.14
NPAS3Q8IXF0 SNORD33-201ENST00000362761 85 ntBASIC1.7□□□□□ -2.14
NPAS3Q8IXF0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.7□□□□□ -2.14
NPAS3Q8IXF0 RNU6-135P-201ENST00000516769 101 ntBASIC1.7□□□□□ -2.14
NPAS3Q8IXF0 MIR4299-201ENST00000577899 72 ntBASIC1.7□□□□□ -2.14
NPAS3Q8IXF0 RNA5SP47-201ENST00000517230 109 ntBASIC1.69□□□□□ -2.14
NPAS3Q8IXF0 MIR3122-201ENST00000577243 73 ntBASIC1.69□□□□□ -2.14
NPAS3Q8IXF0 SNORD53B-201ENST00000577887 78 ntBASIC1.69□□□□□ -2.14
NPAS3Q8IXF0 RNU1-42P-201ENST00000364033 160 ntBASIC1.68□□□□□ -2.14
NPAS3Q8IXF0 MIR30A-201ENST00000385092 71 ntBASIC1.68□□□□□ -2.14
NPAS3Q8IXF0 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.68□□□□□ -2.14
NPAS3Q8IXF0 BX248123.2-201ENST00000606318 124 ntBASIC1.68□□□□□ -2.14
NPAS3Q8IXF0 AC243829.6-201ENST00000612652 106 ntBASIC1.68□□□□□ -2.14
NPAS3Q8IXF0 SNORD48-201ENST00000364953 64 ntBASIC1.67□□□□□ -2.14
NPAS3Q8IXF0 SNORD79.1-201ENST00000516069 84 ntBASIC1.67□□□□□ -2.14
NPAS3Q8IXF0 MIR548AL-201ENST00000578416 97 ntBASIC1.67□□□□□ -2.14
NPAS3Q8IXF0 U6.103-201ENST00000637085 61 ntBASIC1.67□□□□□ -2.14
NPAS3Q8IXF0 SNORD89-201ENST00000390981 114 ntBASIC1.66□□□□□ -2.14
NPAS3Q8IXF0 U7.7-201ENST00000459276 60 ntBASIC1.66□□□□□ -2.14
NPAS3Q8IXF0 MIR3678-201ENST00000578455 94 ntBASIC1.66□□□□□ -2.14
NPAS3Q8IXF0 RNU6-1008P-201ENST00000384160 104 ntBASIC1.65□□□□□ -2.15
NPAS3Q8IXF0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.65□□□□□ -2.15
NPAS3Q8IXF0 AC006210.1-201ENST00000424882 111 ntBASIC1.65□□□□□ -2.15
NPAS3Q8IXF0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.65□□□□□ -2.15
NPAS3Q8IXF0 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
NPAS3Q8IXF0 SNORA67.6-201ENST00000391093 99 ntBASIC1.64□□□□□ -2.15
NPAS3Q8IXF0 MIR1323-201ENST00000408090 73 ntBASIC1.64□□□□□ -2.15
NPAS3Q8IXF0 snoU13.18-201ENST00000459483 104 ntBASIC1.64□□□□□ -2.15
NPAS3Q8IXF0 RNU1-92P-201ENST00000517017 135 ntBASIC1.64□□□□□ -2.15
NPAS3Q8IXF0 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
NPAS3Q8IXF0 Y_RNA.327-201ENST00000365201 102 ntBASIC1.63□□□□□ -2.15
NPAS3Q8IXF0 RNU6-458P-201ENST00000384179 107 ntBASIC1.63□□□□□ -2.15
NPAS3Q8IXF0 SNORD110-201ENST00000408189 75 ntBASIC1.63□□□□□ -2.15
NPAS3Q8IXF0 RNU7-151P-201ENST00000516930 53 ntBASIC1.63□□□□□ -2.15
NPAS3Q8IXF0 U6.58-201ENST00000613107 107 ntBASIC1.63□□□□□ -2.15
NPAS3Q8IXF0 AC243829.3-201ENST00000622177 108 ntBASIC1.63□□□□□ -2.15
NPAS3Q8IXF0 U2.18-201ENST00000622185 84 ntBASIC1.63□□□□□ -2.15
NPAS3Q8IXF0 RNU6-392P-201ENST00000364926 101 ntBASIC1.62□□□□□ -2.15
NPAS3Q8IXF0 AC098934.3-201ENST00000430450 190 ntBASIC1.62□□□□□ -2.15
NPAS3Q8IXF0 RNU6-1206P-201ENST00000516339 103 ntBASIC1.62□□□□□ -2.15
NPAS3Q8IXF0 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.62□□□□□ -2.15
NPAS3Q8IXF0 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
NPAS3Q8IXF0 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
NPAS3Q8IXF0 Y_RNA.69-201ENST00000362885 109 ntBASIC1.61□□□□□ -2.15
NPAS3Q8IXF0 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
NPAS3Q8IXF0 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.61□□□□□ -2.15
NPAS3Q8IXF0 SCARNA16.5-201ENST00000517114 183 ntBASIC1.61□□□□□ -2.15
NPAS3Q8IXF0 AL162376.1-201ENST00000624117 175 ntBASIC1.61□□□□□ -2.15
NPAS3Q8IXF0 RNA5SP227-201ENST00000516184 113 ntBASIC1.6□□□□□ -2.15
NPAS3Q8IXF0 SNORA44.1-201ENST00000517031 108 ntBASIC1.6□□□□□ -2.15
NPAS3Q8IXF0 MIR4421-201ENST00000578133 69 ntBASIC1.6□□□□□ -2.15
NPAS3Q8IXF0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.6□□□□□ -2.15
NPAS3Q8IXF0 RNU6-598P-201ENST00000364017 105 ntBASIC1.59□□□□□ -2.15
NPAS3Q8IXF0 MIR222-201ENST00000384992 110 ntBASIC1.59□□□□□ -2.15
NPAS3Q8IXF0 MIR329-2-201ENST00000385029 84 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 196.8 ms