Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.03□□□□□ -2.41
CCDC28AQ8IWP9 RNU7-165P-201ENST00000458864 60 ntBASIC-0.03□□□□□ -2.41
CCDC28AQ8IWP9 RNU6-180P-201ENST00000516697 61 ntBASIC-0.03□□□□□ -2.41
CCDC28AQ8IWP9 RNU6-633P-201ENST00000362612 103 ntBASIC-0.04□□□□□ -2.42
CCDC28AQ8IWP9 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.04□□□□□ -2.42
CCDC28AQ8IWP9 CR383656.4-201ENST00000546909 122 ntBASIC-0.04□□□□□ -2.42
CCDC28AQ8IWP9 MIR4667-201ENST00000578933 66 ntBASIC-0.04□□□□□ -2.42
CCDC28AQ8IWP9 MIR4768-201ENST00000585270 74 ntBASIC-0.04□□□□□ -2.42
CCDC28AQ8IWP9 MIR148A-201ENST00000362215 68 ntBASIC-0.05□□□□□ -2.42
CCDC28AQ8IWP9 SNORD90-201ENST00000391145 111 ntBASIC-0.05□□□□□ -2.42
CCDC28AQ8IWP9 RNU6-762P-201ENST00000517107 102 ntBASIC-0.05□□□□□ -2.42
CCDC28AQ8IWP9 SNORD114-16-201ENST00000363044 70 ntBASIC-0.06□□□□□ -2.42
CCDC28AQ8IWP9 SNORD115-37-201ENST00000363768 82 ntBASIC-0.06□□□□□ -2.42
CCDC28AQ8IWP9 SNORD115-27-201ENST00000364430 82 ntBASIC-0.06□□□□□ -2.42
CCDC28AQ8IWP9 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.06□□□□□ -2.42
CCDC28AQ8IWP9 AC244090.1-201ENST00000441884 93 ntBASIC-0.06□□□□□ -2.42
CCDC28AQ8IWP9 RN7SL660P-201ENST00000614852 299 ntBASIC-0.06□□□□□ -2.42
CCDC28AQ8IWP9 PVT1_3.1-201ENST00000620853 95 ntBASIC-0.06□□□□□ -2.42
CCDC28AQ8IWP9 RNU6-495P-201ENST00000362995 107 ntBASIC-0.07□□□□□ -2.42
CCDC28AQ8IWP9 Y_RNA.118-201ENST00000363300 101 ntBASIC-0.07□□□□□ -2.42
CCDC28AQ8IWP9 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
CCDC28AQ8IWP9 AC104692.1-201ENST00000472406 90 ntBASIC-0.07□□□□□ -2.42
CCDC28AQ8IWP9 RNU7-153P-201ENST00000516455 62 ntBASIC-0.07□□□□□ -2.42
CCDC28AQ8IWP9 MIR1273G-201ENST00000577677 100 ntBASIC-0.07□□□□□ -2.42
CCDC28AQ8IWP9 MIR371B-201ENST00000638082 66 ntBASIC-0.07□□□□□ -2.42
CCDC28AQ8IWP9 RNY1P7-201ENST00000384743 110 ntBASIC-0.08□□□□□ -2.42
CCDC28AQ8IWP9 SNORD42B-201ENST00000458893 67 ntBASIC-0.08□□□□□ -2.42
CCDC28AQ8IWP9 Y_RNA.36-201ENST00000362602 112 ntBASIC-0.09□□□□□ -2.42
CCDC28AQ8IWP9 MIR106A-201ENST00000384870 81 ntBASIC-0.09□□□□□ -2.42
CCDC28AQ8IWP9 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.09□□□□□ -2.42
CCDC28AQ8IWP9 SNORD75.2-201ENST00000408784 58 ntBASIC-0.09□□□□□ -2.42
CCDC28AQ8IWP9 RNU6-402P-201ENST00000410678 103 ntBASIC-0.09□□□□□ -2.42
CCDC28AQ8IWP9 RNU7-24P-201ENST00000458867 62 ntBASIC-0.09□□□□□ -2.42
CCDC28AQ8IWP9 MIR6718-201ENST00000616153 80 ntBASIC-0.09□□□□□ -2.42
CCDC28AQ8IWP9 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.09□□□□□ -2.42
CCDC28AQ8IWP9 MIR330-201ENST00000362196 94 ntBASIC-0.1□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-219P-201ENST00000364728 107 ntBASIC-0.1□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-929P-201ENST00000384429 107 ntBASIC-0.1□□□□□ -2.43
CCDC28AQ8IWP9 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.1□□□□□ -2.43
CCDC28AQ8IWP9 AC097510.1-201ENST00000510945 133 ntBASIC-0.1□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-175P-201ENST00000516896 107 ntBASIC-0.1□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-844P-201ENST00000517175 102 ntBASIC-0.1□□□□□ -2.43
CCDC28AQ8IWP9 AC006254.2-201ENST00000603259 279 ntBASIC-0.1□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.11□□□□□ -2.43
CCDC28AQ8IWP9 RNA5SP63-201ENST00000391225 112 ntBASIC-0.11□□□□□ -2.43
CCDC28AQ8IWP9 Y_RNA.694-201ENST00000516677 117 ntBASIC-0.11□□□□□ -2.43
CCDC28AQ8IWP9 MIR1295B-201ENST00000636144 60 ntBASIC-0.11□□□□□ -2.43
CCDC28AQ8IWP9 SNORD2-201ENST00000459163 69 ntBASIC-0.12□□□□□ -2.43
CCDC28AQ8IWP9 MIR8087-201ENST00000612745 78 ntBASIC-0.12□□□□□ -2.43
CCDC28AQ8IWP9 RNA5SP98-201ENST00000363158 137 ntBASIC-0.13□□□□□ -2.43
CCDC28AQ8IWP9 Y_RNA.258-201ENST00000364613 105 ntBASIC-0.13□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-46P-201ENST00000383860 107 ntBASIC-0.13□□□□□ -2.43
CCDC28AQ8IWP9 snoU13.17-201ENST00000458802 104 ntBASIC-0.13□□□□□ -2.43
CCDC28AQ8IWP9 AC093729.1-201ENST00000513074 128 ntBASIC-0.13□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.14□□□□□ -2.43
CCDC28AQ8IWP9 RNY4P30-201ENST00000410216 95 ntBASIC-0.14□□□□□ -2.43
CCDC28AQ8IWP9 AL450471.1-201ENST00000447509 127 ntBASIC-0.14□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.15□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-49P-201ENST00000384256 107 ntBASIC-0.15□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-267P-201ENST00000516714 103 ntBASIC-0.15□□□□□ -2.43
CCDC28AQ8IWP9 MIR5190-201ENST00000581537 80 ntBASIC-0.15□□□□□ -2.43
CCDC28AQ8IWP9 RNU6-824P-201ENST00000363724 104 ntBASIC-0.16□□□□□ -2.44
CCDC28AQ8IWP9 RNU6-382P-201ENST00000365181 106 ntBASIC-0.16□□□□□ -2.44
CCDC28AQ8IWP9 RNU6-497P-201ENST00000365316 104 ntBASIC-0.16□□□□□ -2.44
CCDC28AQ8IWP9 RNU6-675P-201ENST00000384236 104 ntBASIC-0.16□□□□□ -2.44
CCDC28AQ8IWP9 MIR4773-1-201ENST00000637203 78 ntBASIC-0.16□□□□□ -2.44
CCDC28AQ8IWP9 RNU6-208P-201ENST00000362431 107 ntBASIC-0.17□□□□□ -2.44
CCDC28AQ8IWP9 MIR489-201ENST00000384923 84 ntBASIC-0.17□□□□□ -2.44
CCDC28AQ8IWP9 SNORD77.2-201ENST00000391045 68 ntBASIC-0.17□□□□□ -2.44
CCDC28AQ8IWP9 MIR548E-201ENST00000408287 88 ntBASIC-0.17□□□□□ -2.44
CCDC28AQ8IWP9 U6.81-201ENST00000612550 106 ntBASIC-0.17□□□□□ -2.44
CCDC28AQ8IWP9 MIR548BB-201ENST00000626714 66 ntBASIC-0.17□□□□□ -2.44
CCDC28AQ8IWP9 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.18□□□□□ -2.44
CCDC28AQ8IWP9 MIR582-201ENST00000365731 98 ntBASIC-0.18□□□□□ -2.44
CCDC28AQ8IWP9 MIR1197-201ENST00000408818 88 ntBASIC-0.18□□□□□ -2.44
CCDC28AQ8IWP9 RNU6-274P-201ENST00000459566 107 ntBASIC-0.18□□□□□ -2.44
CCDC28AQ8IWP9 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.19□□□□□ -2.44
CCDC28AQ8IWP9 RNU6-592P-201ENST00000411333 103 ntBASIC-0.19□□□□□ -2.44
CCDC28AQ8IWP9 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.2□□□□□ -2.44
CCDC28AQ8IWP9 AC140658.3-201ENST00000567603 271 ntBASIC-0.2□□□□□ -2.44
CCDC28AQ8IWP9 SNORA18.1-201ENST00000363418 128 ntBASIC-0.21□□□□□ -2.44
CCDC28AQ8IWP9 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.21□□□□□ -2.44
CCDC28AQ8IWP9 MIR6507-201ENST00000613630 70 ntBASIC-0.21□□□□□ -2.44
CCDC28AQ8IWP9 SNORA63.6-201ENST00000364921 119 ntBASIC-0.22□□□□□ -2.44
CCDC28AQ8IWP9 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.22□□□□□ -2.44
CCDC28AQ8IWP9 RNU6-624P-201ENST00000363411 107 ntBASIC-0.23□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-681P-201ENST00000364012 104 ntBASIC-0.23□□□□□ -2.45
CCDC28AQ8IWP9 SNORD49B-201ENST00000365172 72 ntBASIC-0.23□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.23□□□□□ -2.45
CCDC28AQ8IWP9 SNORA49-201ENST00000386157 136 ntBASIC-0.23□□□□□ -2.45
CCDC28AQ8IWP9 IGLL4P-201ENST00000614590 133 ntBASIC-0.23□□□□□ -2.45
CCDC28AQ8IWP9 SNORD115-25-201ENST00000362619 82 ntBASIC-0.24□□□□□ -2.45
CCDC28AQ8IWP9 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.24□□□□□ -2.45
CCDC28AQ8IWP9 AC244250.2-201ENST00000418731 148 ntBASIC-0.24□□□□□ -2.45
CCDC28AQ8IWP9 AL691482.2-201ENST00000457453 84 ntBASIC-0.24□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.24□□□□□ -2.45
CCDC28AQ8IWP9 RNA5SP330-201ENST00000517096 96 ntBASIC-0.24□□□□□ -2.45
CCDC28AQ8IWP9 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.24□□□□□ -2.45
CCDC28AQ8IWP9 RNY1P1-201ENST00000364372 112 ntBASIC-0.25□□□□□ -2.45
CCDC28AQ8IWP9 RNU6-990P-201ENST00000364385 104 ntBASIC-0.25□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 181.1 ms