Protein–RNA interactions for Protein: P47972

NPTX2, Neuronal pentraxin-2, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPTX2P47972 RNU6-473P-201ENST00000516164 107 ntBASIC0.46□□□□□ -2.34
NPTX2P47972 RNU6-1232P-201ENST00000516299 86 ntBASIC0.46□□□□□ -2.34
NPTX2P47972 RNU6-1049P-201ENST00000516414 107 ntBASIC0.46□□□□□ -2.34
NPTX2P47972 PVT1_3.1-201ENST00000620853 95 ntBASIC0.46□□□□□ -2.34
NPTX2P47972 RNU6-824P-201ENST00000363724 104 ntBASIC0.45□□□□□ -2.34
NPTX2P47972 MIR216A-201ENST00000385063 110 ntBASIC0.45□□□□□ -2.34
NPTX2P47972 HMGN2P22-201ENST00000427588 175 ntBASIC0.45□□□□□ -2.34
NPTX2P47972 RNA5SP480-201ENST00000516840 109 ntBASIC0.45□□□□□ -2.34
NPTX2P47972 MIR4473-201ENST00000583731 91 ntBASIC0.45□□□□□ -2.34
NPTX2P47972 MIR5087-201ENST00000635826 76 ntBASIC0.45□□□□□ -2.34
NPTX2P47972 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.44□□□□□ -2.34
NPTX2P47972 Y_RNA.36-201ENST00000362602 112 ntBASIC0.44□□□□□ -2.34
NPTX2P47972 Y_RNA.219-201ENST00000364232 113 ntBASIC0.44□□□□□ -2.34
NPTX2P47972 Y_RNA.264-201ENST00000364665 102 ntBASIC0.44□□□□□ -2.34
NPTX2P47972 SNORA50A-201ENST00000384225 134 ntBASIC0.44□□□□□ -2.34
NPTX2P47972 MIR760-201ENST00000390220 80 ntBASIC0.44□□□□□ -2.34
NPTX2P47972 MIR1245B-201ENST00000636115 69 ntBASIC0.44□□□□□ -2.34
NPTX2P47972 RNU6-686P-201ENST00000364839 107 ntBASIC0.43□□□□□ -2.34
NPTX2P47972 Y_RNA.313-201ENST00000365095 103 ntBASIC0.43□□□□□ -2.34
NPTX2P47972 MIR3202-2-201ENST00000635980 79 ntBASIC0.43□□□□□ -2.34
NPTX2P47972 AC090625.1-201ENST00000357130 210 ntBASIC0.42□□□□□ -2.34
NPTX2P47972 MIRLET7A1-201ENST00000362295 80 ntBASIC0.42□□□□□ -2.34
NPTX2P47972 RNU6-495P-201ENST00000362995 107 ntBASIC0.42□□□□□ -2.34
NPTX2P47972 SNORD42B-201ENST00000458893 67 ntBASIC0.42□□□□□ -2.34
NPTX2P47972 U7.6-201ENST00000610841 64 ntBASIC0.42□□□□□ -2.34
NPTX2P47972 U6.81-201ENST00000612550 106 ntBASIC0.42□□□□□ -2.34
NPTX2P47972 AC243829.6-201ENST00000612652 106 ntBASIC0.42□□□□□ -2.34
NPTX2P47972 RNU6-315P-201ENST00000362666 107 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 Y_RNA.125-201ENST00000363371 111 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 RNU6-382P-201ENST00000365181 106 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 Y_RNA.371-201ENST00000365591 113 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 RNU6-1124P-201ENST00000384169 107 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 MIR501-201ENST00000390204 84 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 SNORD75.2-201ENST00000408784 58 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 RNU7-24P-201ENST00000458867 62 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 RN7SL793P-201ENST00000583259 296 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 MIR548AE1-201ENST00000583292 70 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 MIR4712-201ENST00000583750 82 ntBASIC0.41□□□□□ -2.34
NPTX2P47972 Y_RNA.12-201ENST00000362393 112 ntBASIC0.4□□□□□ -2.35
NPTX2P47972 RNU6-228P-201ENST00000362700 106 ntBASIC0.4□□□□□ -2.35
NPTX2P47972 RNA5SP128-201ENST00000365305 116 ntBASIC0.4□□□□□ -2.35
NPTX2P47972 Y_RNA.407-201ENST00000383986 113 ntBASIC0.4□□□□□ -2.35
NPTX2P47972 Y_RNA.606-201ENST00000410579 103 ntBASIC0.4□□□□□ -2.35
NPTX2P47972 YWHAEP3-201ENST00000582767 121 ntBASIC0.4□□□□□ -2.35
NPTX2P47972 MIR4773-1-201ENST00000637203 78 ntBASIC0.4□□□□□ -2.35
NPTX2P47972 SNORD114-26-201ENST00000363543 72 ntBASIC0.39□□□□□ -2.35
NPTX2P47972 RNU6-340P-201ENST00000364005 107 ntBASIC0.39□□□□□ -2.35
NPTX2P47972 SNORD78.1-201ENST00000390866 65 ntBASIC0.39□□□□□ -2.35
NPTX2P47972 RNU7-129P-201ENST00000516128 62 ntBASIC0.39□□□□□ -2.35
NPTX2P47972 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.39□□□□□ -2.35
NPTX2P47972 Y_RNA.94-201ENST00000363068 106 ntBASIC0.38□□□□□ -2.35
NPTX2P47972 RNA5SP62-201ENST00000363457 110 ntBASIC0.38□□□□□ -2.35
NPTX2P47972 SNORD114-23-201ENST00000363536 72 ntBASIC0.38□□□□□ -2.35
NPTX2P47972 RNU6-815P-201ENST00000384080 113 ntBASIC0.38□□□□□ -2.35
NPTX2P47972 AC073261.1-201ENST00000429409 121 ntBASIC0.38□□□□□ -2.35
NPTX2P47972 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.38□□□□□ -2.35
NPTX2P47972 VTRNA1-3-201ENST00000365645 89 ntBASIC0.37□□□□□ -2.35
NPTX2P47972 Y_RNA.532-201ENST00000384590 113 ntBASIC0.37□□□□□ -2.35
NPTX2P47972 Y_RNA.540-201ENST00000384638 111 ntBASIC0.37□□□□□ -2.35
NPTX2P47972 MIR7-2-201ENST00000384970 110 ntBASIC0.37□□□□□ -2.35
NPTX2P47972 MIR4677-201ENST00000584153 80 ntBASIC0.37□□□□□ -2.35
NPTX2P47972 MIR548AD-201ENST00000584780 82 ntBASIC0.37□□□□□ -2.35
NPTX2P47972 MIR499B-201ENST00000636498 73 ntBASIC0.37□□□□□ -2.35
NPTX2P47972 SNORA9.1-201ENST00000362412 131 ntBASIC0.36□□□□□ -2.35
NPTX2P47972 MIR652-201ENST00000385278 98 ntBASIC0.36□□□□□ -2.35
NPTX2P47972 MIR1255A-201ENST00000408338 113 ntBASIC0.36□□□□□ -2.35
NPTX2P47972 RNU6-274P-201ENST00000459566 107 ntBASIC0.36□□□□□ -2.35
NPTX2P47972 RNA5SP134-201ENST00000516492 96 ntBASIC0.36□□□□□ -2.35
NPTX2P47972 uc_338.10-201ENST00000621872 182 ntBASIC0.36□□□□□ -2.35
NPTX2P47972 RNU6-681P-201ENST00000364012 104 ntBASIC0.35□□□□□ -2.35
NPTX2P47972 RNU6-1327P-201ENST00000365302 105 ntBASIC0.35□□□□□ -2.35
NPTX2P47972 MIR193B-201ENST00000384907 83 ntBASIC0.35□□□□□ -2.35
NPTX2P47972 RNU6-303P-201ENST00000517091 106 ntBASIC0.35□□□□□ -2.35
NPTX2P47972 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.34□□□□□ -2.35
NPTX2P47972 SNORD114-4-201ENST00000363962 75 ntBASIC0.34□□□□□ -2.36
NPTX2P47972 RNU6-154P-201ENST00000384306 106 ntBASIC0.34□□□□□ -2.36
NPTX2P47972 RNU6-380P-201ENST00000410207 107 ntBASIC0.34□□□□□ -2.36
NPTX2P47972 AC108740.1-201ENST00000498629 225 ntBASIC0.34□□□□□ -2.36
NPTX2P47972 AC069113.3-201ENST00000521019 150 ntBASIC0.34□□□□□ -2.36
NPTX2P47972 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
NPTX2P47972 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
NPTX2P47972 MIR516B1-201ENST00000385211 90 ntBASIC0.33□□□□□ -2.36
NPTX2P47972 AC074348.1-201ENST00000426503 132 ntBASIC0.33□□□□□ -2.36
NPTX2P47972 SCARNA17.3-201ENST00000516381 125 ntBASIC0.33□□□□□ -2.36
NPTX2P47972 AC010487.4-201ENST00000637027 61 ntBASIC0.33□□□□□ -2.36
NPTX2P47972 RNU6-1094P-201ENST00000362416 104 ntBASIC0.32□□□□□ -2.36
NPTX2P47972 RNU6-127P-201ENST00000390897 107 ntBASIC0.32□□□□□ -2.36
NPTX2P47972 MIR6779-201ENST00000617283 64 ntBASIC0.32□□□□□ -2.36
NPTX2P47972 RNU6-1039P-201ENST00000383931 107 ntBASIC0.31□□□□□ -2.36
NPTX2P47972 RNA5SP225-201ENST00000410874 135 ntBASIC0.31□□□□□ -2.36
NPTX2P47972 AL691482.2-201ENST00000457453 84 ntBASIC0.31□□□□□ -2.36
NPTX2P47972 MIR4484-201ENST00000582855 83 ntBASIC0.31□□□□□ -2.36
NPTX2P47972 MIR3925-201ENST00000584674 77 ntBASIC0.31□□□□□ -2.36
NPTX2P47972 Y_RNA.205-201ENST00000364128 113 ntBASIC0.3□□□□□ -2.36
NPTX2P47972 RNU6-279P-201ENST00000391297 101 ntBASIC0.3□□□□□ -2.36
NPTX2P47972 RNU6-752P-201ENST00000516376 102 ntBASIC0.3□□□□□ -2.36
NPTX2P47972 RNA5SP395-201ENST00000516567 118 ntBASIC0.3□□□□□ -2.36
NPTX2P47972 RNU6-807P-201ENST00000516805 107 ntBASIC0.3□□□□□ -2.36
NPTX2P47972 RNU7-188P-201ENST00000517063 64 ntBASIC0.3□□□□□ -2.36
NPTX2P47972 MIR1273G-201ENST00000577677 100 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 172.9 ms