Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AC068339.1-201ENST00000526965 141 ntBASIC-0.6□□□□□ -2.51
SCN1AP35498 AL035470.1-201ENST00000622571 220 ntBASIC-0.6□□□□□ -2.51
SCN1AP35498 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.61□□□□□ -2.51
SCN1AP35498 AC090425.1-201ENST00000610007 140 ntBASIC-0.61□□□□□ -2.51
SCN1AP35498 AL157777.2-201ENST00000258070 137 ntBASIC-0.62□□□□□ -2.51
SCN1AP35498 RNA5SP292-201ENST00000390974 118 ntBASIC-0.62□□□□□ -2.51
SCN1AP35498 AL158147.1-201ENST00000443970 75 ntBASIC-0.62□□□□□ -2.51
SCN1AP35498 snoR1.1-201ENST00000628177 80 ntBASIC-0.62□□□□□ -2.51
SCN1AP35498 RNU6-907P-201ENST00000390924 102 ntBASIC-0.62□□□□□ -2.51
SCN1AP35498 RNU6-972P-201ENST00000391208 107 ntBASIC-0.62□□□□□ -2.51
SCN1AP35498 AL353813.1-201ENST00000440700 253 ntBASIC-0.62□□□□□ -2.51
SCN1AP35498 RNU5F-1-201ENST00000362507 117 ntBASIC-0.63□□□□□ -2.51
SCN1AP35498 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.63□□□□□ -2.51
SCN1AP35498 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.63□□□□□ -2.51
SCN1AP35498 SNORD58A-201ENST00000383875 65 ntBASIC-0.63□□□□□ -2.51
SCN1AP35498 SNORD75.2-201ENST00000408784 58 ntBASIC-0.63□□□□□ -2.51
SCN1AP35498 MIR6773-201ENST00000612812 74 ntBASIC-0.63□□□□□ -2.51
SCN1AP35498 SNORD116-10-201ENST00000363791 102 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 MIR204-201ENST00000385200 110 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 RNU6-519P-201ENST00000410590 108 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 SNORA19.1-201ENST00000410656 129 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 AC021146.6-201ENST00000514659 117 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 MIR3179-1-201ENST00000578940 84 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 MIR3179-2-201ENST00000579107 84 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 MIR3179-3-201ENST00000579566 84 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 MIR3179-4-201ENST00000617599 84 ntBASIC-0.64□□□□□ -2.51
SCN1AP35498 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 SNORD115-25-201ENST00000362619 82 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 MIR548A1-201ENST00000385041 97 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 snoU13.13-201ENST00000458842 104 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 MIR4777-201ENST00000583710 86 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.65□□□□□ -2.51
SCN1AP35498 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 MIR582-201ENST00000365731 98 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.65□□□□□ -2.51
SCN1AP35498 SNORD42B-201ENST00000458893 67 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 MIR8068-201ENST00000618032 68 ntBASIC-0.65□□□□□ -2.51
SCN1AP35498 RNY1P5-201ENST00000383890 115 ntBASIC-0.66□□□□□ -2.52
SCN1AP35498 SNORD83B-201ENST00000386745 93 ntBASIC-0.66□□□□□ -2.52
SCN1AP35498 AL445193.1-201ENST00000441183 141 ntBASIC-0.66□□□□□ -2.52
SCN1AP35498 SNORD38.3-201ENST00000516599 73 ntBASIC-0.66□□□□□ -2.52
SCN1AP35498 RNU6-255P-201ENST00000516957 105 ntBASIC-0.66□□□□□ -2.52
SCN1AP35498 MIR3140-201ENST00000583685 90 ntBASIC-0.66□□□□□ -2.52
SCN1AP35498 MIR6739-201ENST00000622461 75 ntBASIC-0.66□□□□□ -2.52
SCN1AP35498 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 MIR203A-201ENST00000384836 110 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 MIR548I1-201ENST00000408810 149 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.67□□□□□ -2.52
SCN1AP35498 RNU6-881P-201ENST00000516813 102 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 RNU6-959P-201ENST00000384671 107 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 RNU6-476P-201ENST00000384726 107 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 RNU6-337P-201ENST00000391243 106 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 snoU13.17-201ENST00000458802 104 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 MIR3064-201ENST00000581130 66 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 MIR6509-201ENST00000614603 85 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 MIR6129-201ENST00000616087 109 ntBASIC-0.67□□□□□ -2.52
SCN1AP35498 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.68□□□□□ -2.52
SCN1AP35498 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.68□□□□□ -2.52
SCN1AP35498 AC103810.7-201ENST00000607821 91 ntBASIC-0.68□□□□□ -2.52
SCN1AP35498 MIR3914-2-201ENST00000637339 95 ntBASIC-0.68□□□□□ -2.52
SCN1AP35498 SNORA15B-2-201ENST00000384058 135 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 SNORA15B-1-201ENST00000384334 135 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 U6.95-201ENST00000636931 70 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 Y_RNA.250-201ENST00000364542 110 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 RNU6-880P-201ENST00000384526 107 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 RNU6-644P-201ENST00000391155 98 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 RNU6-887P-201ENST00000410660 100 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 RNU6-346P-201ENST00000516288 111 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 YWHAEP3-201ENST00000582767 121 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 MIR548Z-201ENST00000584743 97 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 AC145423.2-201ENST00000610631 239 ntBASIC-0.69□□□□□ -2.52
SCN1AP35498 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.7□□□□□ -2.52
SCN1AP35498 SNORA63.6-201ENST00000364921 119 ntBASIC-0.7□□□□□ -2.52
SCN1AP35498 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.7□□□□□ -2.52
SCN1AP35498 SNORD57-201ENST00000448188 72 ntBASIC-0.7□□□□□ -2.52
SCN1AP35498 AL691482.2-201ENST00000457453 84 ntBASIC-0.7□□□□□ -2.52
SCN1AP35498 MIR5704-201ENST00000584029 77 ntBASIC-0.7□□□□□ -2.52
SCN1AP35498 MIR3657-201ENST00000584818 117 ntBASIC-0.7□□□□□ -2.52
SCN1AP35498 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 SNORD115-23-201ENST00000364461 82 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 RNU6-260P-201ENST00000384092 107 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 MIR378F-201ENST00000578143 78 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 RNU6-813P-201ENST00000384691 107 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 MIR518B-201ENST00000385127 83 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 AP000533.3-201ENST00000447704 118 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 FGF7P7-201ENST00000514120 227 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 SCARNA23-201ENST00000516060 130 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 RNU6-795P-201ENST00000516323 103 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 MIR3671-201ENST00000580455 88 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 MIR4306-201ENST00000583390 91 ntBASIC-0.71□□□□□ -2.52
SCN1AP35498 RNA5SP67-201ENST00000516422 131 ntBASIC-0.72□□□□□ -2.52
SCN1AP35498 RNU6-973P-201ENST00000364690 107 ntBASIC-0.72□□□□□ -2.53
SCN1AP35498 RNU6-537P-201ENST00000517277 103 ntBASIC-0.72□□□□□ -2.53
SCN1AP35498 RNU4-32P-201ENST00000363404 141 ntBASIC-0.73□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 212.3 ms