Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC098934.3-201ENST00000430450 190 ntBASIC0.97□□□□□ -2.25
COL3A1P02461 AC002350.1-201ENST00000490759 375 ntBASIC0.97□□□□□ -2.25
COL3A1P02461 RNU6-1110P-201ENST00000516462 101 ntBASIC0.97□□□□□ -2.25
COL3A1P02461 MIR2909-201ENST00000617113 69 ntBASIC0.97□□□□□ -2.25
COL3A1P02461 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.97□□□□□ -2.25
COL3A1P02461 RNU6-1216P-201ENST00000362590 107 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 RNU6-495P-201ENST00000362995 107 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 SNORD113.1-201ENST00000363280 73 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 SNORA25-201ENST00000384384 134 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 SNORD45A-201ENST00000384512 84 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 SNORD75.2-201ENST00000408784 58 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 FABP5P4-201ENST00000437203 171 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 U7.7-201ENST00000459276 60 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 RNU7-104P-201ENST00000459398 79 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 RNU6-469P-201ENST00000516253 101 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 RNU6-881P-201ENST00000516813 102 ntBASIC0.96□□□□□ -2.26
COL3A1P02461 RNA5SP62-201ENST00000363457 110 ntBASIC0.95□□□□□ -2.26
COL3A1P02461 SNORD89-201ENST00000390981 114 ntBASIC0.95□□□□□ -2.26
COL3A1P02461 MIR548AG2-201ENST00000581228 64 ntBASIC0.95□□□□□ -2.26
COL3A1P02461 AC005520.4-201ENST00000604337 90 ntBASIC0.95□□□□□ -2.26
COL3A1P02461 MIR8087-201ENST00000612745 78 ntBASIC0.95□□□□□ -2.26
COL3A1P02461 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.94□□□□□ -2.26
COL3A1P02461 MIR4639-201ENST00000584938 69 ntBASIC0.94□□□□□ -2.26
COL3A1P02461 MIR548O2-201ENST00000616090 70 ntBASIC0.94□□□□□ -2.26
COL3A1P02461 SNORA25.4-201ENST00000363666 124 ntBASIC0.93□□□□□ -2.26
COL3A1P02461 MIR519E-201ENST00000385075 84 ntBASIC0.93□□□□□ -2.26
COL3A1P02461 MIR644A-201ENST00000385262 94 ntBASIC0.93□□□□□ -2.26
COL3A1P02461 SNORD105-201ENST00000386910 85 ntBASIC0.93□□□□□ -2.26
COL3A1P02461 MIR6509-201ENST00000614603 85 ntBASIC0.93□□□□□ -2.26
COL3A1P02461 RNU6-1039P-201ENST00000383931 107 ntBASIC0.92□□□□□ -2.26
COL3A1P02461 SNORD28-201ENST00000384706 75 ntBASIC0.92□□□□□ -2.26
COL3A1P02461 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
COL3A1P02461 MIR548L-201ENST00000408303 86 ntBASIC0.92□□□□□ -2.26
COL3A1P02461 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.92□□□□□ -2.26
COL3A1P02461 AC244669.1-204ENST00000621564 178 ntBASIC0.92□□□□□ -2.26
COL3A1P02461 MIR26B-201ENST00000362251 77 ntBASIC0.92□□□□□ -2.26
COL3A1P02461 Y_RNA.443-201ENST00000384135 111 ntBASIC0.92□□□□□ -2.26
COL3A1P02461 RNU6-604P-201ENST00000390917 100 ntBASIC0.92□□□□□ -2.26
COL3A1P02461 MIR6086-201ENST00000638065 55 ntBASIC0.92□□□□□ -2.26
COL3A1P02461 RNA5SP327-201ENST00000362494 101 ntBASIC0.91□□□□□ -2.26
COL3A1P02461 RNA5SP499-201ENST00000363982 119 ntBASIC0.91□□□□□ -2.26
COL3A1P02461 RNU6-35P-201ENST00000384530 107 ntBASIC0.91□□□□□ -2.26
COL3A1P02461 MIR200A-201ENST00000384875 90 ntBASIC0.91□□□□□ -2.26
COL3A1P02461 SNORD41.1-201ENST00000391000 69 ntBASIC0.91□□□□□ -2.26
COL3A1P02461 NAMPTP3-201ENST00000569273 224 ntBASIC0.91□□□□□ -2.26
COL3A1P02461 AC025627.3-201ENST00000582078 182 ntBASIC0.91□□□□□ -2.26
COL3A1P02461 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.9□□□□□ -2.27
COL3A1P02461 RNU6-260P-201ENST00000384092 107 ntBASIC0.9□□□□□ -2.27
COL3A1P02461 MIR508-201ENST00000384857 115 ntBASIC0.9□□□□□ -2.27
COL3A1P02461 MTND4LP1-201ENST00000446263 157 ntBASIC0.9□□□□□ -2.27
COL3A1P02461 AC103706.3-201ENST00000636297 85 ntBASIC0.9□□□□□ -2.27
COL3A1P02461 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
COL3A1P02461 SNORD116-24-201ENST00000384549 92 ntBASIC0.89□□□□□ -2.27
COL3A1P02461 MIR19B1-201ENST00000384829 87 ntBASIC0.89□□□□□ -2.27
COL3A1P02461 MIR3678-201ENST00000578455 94 ntBASIC0.89□□□□□ -2.27
COL3A1P02461 SNORD114-4-201ENST00000363962 75 ntBASIC0.88□□□□□ -2.27
COL3A1P02461 RNU6V-201ENST00000384105 107 ntBASIC0.88□□□□□ -2.27
COL3A1P02461 MIR203A-201ENST00000384836 110 ntBASIC0.88□□□□□ -2.27
COL3A1P02461 AC069503.3-201ENST00000618674 145 ntBASIC0.88□□□□□ -2.27
COL3A1P02461 RNU6-668P-201ENST00000364180 107 ntBASIC0.87□□□□□ -2.27
COL3A1P02461 RNU6-726P-201ENST00000364680 107 ntBASIC0.87□□□□□ -2.27
COL3A1P02461 SNORD26-201ENST00000384147 75 ntBASIC0.87□□□□□ -2.27
COL3A1P02461 RNA5SP47-201ENST00000517230 109 ntBASIC0.87□□□□□ -2.27
COL3A1P02461 MIR4460-201ENST00000577862 86 ntBASIC0.87□□□□□ -2.27
COL3A1P02461 MIR4511-201ENST00000582784 87 ntBASIC0.87□□□□□ -2.27
COL3A1P02461 MIR6835-201ENST00000621552 64 ntBASIC0.87□□□□□ -2.27
COL3A1P02461 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
COL3A1P02461 RNU6-54P-201ENST00000365563 107 ntBASIC0.86□□□□□ -2.27
COL3A1P02461 RNU6-716P-201ENST00000365621 103 ntBASIC0.86□□□□□ -2.27
COL3A1P02461 MT-TY-201ENST00000387409 66 ntBASIC0.86□□□□□ -2.27
COL3A1P02461 AC073869.9-201ENST00000641610 120 ntBASIC0.86□□□□□ -2.27
COL3A1P02461 SNORD18A-201ENST00000363753 72 ntBASIC0.86□□□□□ -2.27
COL3A1P02461 RNU1-141P-201ENST00000364623 158 ntBASIC0.86□□□□□ -2.27
COL3A1P02461 RNU6-982P-201ENST00000516216 102 ntBASIC0.86□□□□□ -2.27
COL3A1P02461 MIR3612-201ENST00000579753 87 ntBASIC0.86□□□□□ -2.27
COL3A1P02461 MIR3657-201ENST00000584818 117 ntBASIC0.86□□□□□ -2.27
COL3A1P02461 SNORA25.8-201ENST00000364831 128 ntBASIC0.85□□□□□ -2.27
COL3A1P02461 SNORD114-24-201ENST00000365029 72 ntBASIC0.85□□□□□ -2.27
COL3A1P02461 SNORA8.2-201ENST00000384372 139 ntBASIC0.85□□□□□ -2.27
COL3A1P02461 MIR573-201ENST00000384964 99 ntBASIC0.85□□□□□ -2.27
COL3A1P02461 SNORD42B-201ENST00000458893 67 ntBASIC0.85□□□□□ -2.27
COL3A1P02461 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.85□□□□□ -2.27
COL3A1P02461 RNU6-542P-201ENST00000516405 103 ntBASIC0.85□□□□□ -2.27
COL3A1P02461 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.85□□□□□ -2.27
COL3A1P02461 MIR9-2-201ENST00000384838 87 ntBASIC0.84□□□□□ -2.28
COL3A1P02461 MIR6866-201ENST00000638146 69 ntBASIC0.84□□□□□ -2.28
COL3A1P02461 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.84□□□□□ -2.28
COL3A1P02461 RNU6-499P-201ENST00000365615 107 ntBASIC0.83□□□□□ -2.28
COL3A1P02461 SNORD124-201ENST00000459577 104 ntBASIC0.83□□□□□ -2.28
COL3A1P02461 SCARNA16.5-201ENST00000517114 183 ntBASIC0.83□□□□□ -2.28
COL3A1P02461 SNORA2.1-201ENST00000363089 137 ntBASIC0.82□□□□□ -2.28
COL3A1P02461 RNU6-1187P-201ENST00000364771 110 ntBASIC0.82□□□□□ -2.28
COL3A1P02461 VTRNA1-3-201ENST00000365645 89 ntBASIC0.82□□□□□ -2.28
COL3A1P02461 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
COL3A1P02461 RNU6-269P-201ENST00000391077 97 ntBASIC0.82□□□□□ -2.28
COL3A1P02461 AC110620.1-201ENST00000416042 228 ntBASIC0.82□□□□□ -2.28
COL3A1P02461 RNA5SP404-201ENST00000517118 132 ntBASIC0.82□□□□□ -2.28
COL3A1P02461 RNU1-124P-201ENST00000363861 145 ntBASIC0.81□□□□□ -2.28
COL3A1P02461 Y_RNA.250-201ENST00000364542 110 ntBASIC0.81□□□□□ -2.28
COL3A1P02461 RNU6-645P-201ENST00000364649 106 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms