Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SNORD38.3-201ENST00000516599 73 ntBASIC-0.73□□□□□ -2.53
SIX3O95343 AC090425.1-201ENST00000610007 140 ntBASIC-0.73□□□□□ -2.53
SIX3O95343 MIR577-201ENST00000385196 96 ntBASIC-0.74□□□□□ -2.53
SIX3O95343 snosnR66.1-201ENST00000391095 99 ntBASIC-0.74□□□□□ -2.53
SIX3O95343 FGF7P7-201ENST00000514120 227 ntBASIC-0.74□□□□□ -2.53
SIX3O95343 MIR548O2-201ENST00000616090 70 ntBASIC-0.74□□□□□ -2.53
SIX3O95343 SNORD114-4-201ENST00000363962 75 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 RNU6-54P-201ENST00000365563 107 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 RNU6-900P-201ENST00000384498 102 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 AL078595.1-201ENST00000404458 226 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 AC025521.1-201ENST00000621624 286 ntBASIC-0.75□□□□□ -2.53
SIX3O95343 RNA5SP93-201ENST00000362525 114 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 SNORD115-25-201ENST00000362619 82 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 RNU6-832P-201ENST00000363319 107 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 Y_RNA.543-201ENST00000384649 107 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 SNORD56B-201ENST00000384713 71 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 SNORD2-201ENST00000459163 69 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 RNU7-200P-201ENST00000516105 62 ntBASIC-0.76□□□□□ -2.53
SIX3O95343 RNY3P2-201ENST00000362918 102 ntBASIC-0.77□□□□□ -2.53
SIX3O95343 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.77□□□□□ -2.53
SIX3O95343 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 Y_RNA.53-201ENST00000362765 102 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 SNORD45B-201ENST00000364617 72 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 U3.27-201ENST00000391237 200 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.78□□□□□ -2.53
SIX3O95343 AC097510.1-201ENST00000510945 133 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 AC068339.1-201ENST00000526965 141 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 MIR4679-2-201ENST00000578358 77 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 MIR4280-201ENST00000582178 76 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 AL035470.1-201ENST00000622571 220 ntBASIC-0.78□□□□□ -2.53
SIX3O95343 RNU6-257P-201ENST00000410238 98 ntBASIC-0.79□□□□□ -2.54
SIX3O95343 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.79□□□□□ -2.54
SIX3O95343 SNORD54-201ENST00000459159 67 ntBASIC-0.8□□□□□ -2.54
SIX3O95343 MIR582-201ENST00000365731 98 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 Y_RNA.464-201ENST00000384282 110 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 MIR548A1-201ENST00000385041 97 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 RNU7-107P-201ENST00000459121 61 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 MIR5704-201ENST00000584029 77 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.81□□□□□ -2.54
SIX3O95343 MIR548A3-201ENST00000385297 97 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 SNORA49-201ENST00000386157 136 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 MIR548U-201ENST00000390728 81 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 AC021146.6-201ENST00000514659 117 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 RNU6-971P-201ENST00000516920 106 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 AL513043.2-201ENST00000573941 143 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 MIR4439-201ENST00000583746 80 ntBASIC-0.82□□□□□ -2.54
SIX3O95343 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.83□□□□□ -2.54
SIX3O95343 SNORD50.2-201ENST00000365465 70 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.84□□□□□ -2.54
SIX3O95343 SNORD42B-201ENST00000458893 67 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 RNU6-75P-201ENST00000515944 104 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 RNU6-346P-201ENST00000516288 111 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 snoR1.1-201ENST00000628177 80 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-0.84□□□□□ -2.54
SIX3O95343 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.85□□□□□ -2.55
SIX3O95343 MIR548E-201ENST00000408287 88 ntBASIC-0.85□□□□□ -2.55
SIX3O95343 MIR5009-201ENST00000578736 100 ntBASIC-0.85□□□□□ -2.55
SIX3O95343 RNU4-36P-201ENST00000364294 144 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.86□□□□□ -2.55
SIX3O95343 RNU7-55P-201ENST00000459426 62 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 SNORA40.17-201ENST00000517256 115 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 AC145423.2-201ENST00000610631 239 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 MIR6851-201ENST00000617060 67 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 U6.95-201ENST00000636931 70 ntBASIC-0.86□□□□□ -2.55
SIX3O95343 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 RNU6-813P-201ENST00000384691 107 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 RNU6-476P-201ENST00000384726 107 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 RNU6-907P-201ENST00000390924 102 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 RNU6-274P-201ENST00000459566 107 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 MIR3140-201ENST00000583685 90 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 AC103810.7-201ENST00000607821 91 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 AC091912.2-201ENST00000624798 167 ntBASIC-0.87□□□□□ -2.55
SIX3O95343 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR518B-201ENST00000385127 83 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR3179-1-201ENST00000578940 84 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR3179-2-201ENST00000579107 84 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR3179-3-201ENST00000579566 84 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 MIR3179-4-201ENST00000617599 84 ntBASIC-0.88□□□□□ -2.55
SIX3O95343 RNU6-80P-201ENST00000384195 107 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 RNU6-644P-201ENST00000391155 98 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 SNORD33.1-201ENST00000516213 88 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 SNORD22.1-201ENST00000516331 125 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 MIR8068-201ENST00000618032 68 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 MIR3914-2-201ENST00000637339 95 ntBASIC-0.89□□□□□ -2.55
SIX3O95343 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-132P-201ENST00000383863 107 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 MIR517B-201ENST00000385102 67 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-721P-201ENST00000410155 105 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-519P-201ENST00000410590 108 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-881P-201ENST00000516813 102 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-706P-201ENST00000517229 104 ntBASIC-0.9□□□□□ -2.55
SIX3O95343 RNU6-502P-201ENST00000362419 108 ntBASIC-0.91□□□□□ -2.56
SIX3O95343 RNU6-973P-201ENST00000364690 107 ntBASIC-0.91□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 189 ms