Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RNU4-36P-201ENST00000364294 144 ntBASIC-0.98□□□□□ -2.57
SEMA3DO95025 SNORD114-3-201ENST00000364969 75 ntBASIC-0.98□□□□□ -2.57
SEMA3DO95025 SNORD50.2-201ENST00000365465 70 ntBASIC-0.98□□□□□ -2.57
SEMA3DO95025 RNU6-804P-201ENST00000384286 107 ntBASIC-0.98□□□□□ -2.57
SEMA3DO95025 RNU7-85P-201ENST00000458851 63 ntBASIC-0.98□□□□□ -2.57
SEMA3DO95025 RNA5SP272-201ENST00000516095 111 ntBASIC-0.98□□□□□ -2.57
SEMA3DO95025 SNORD22.1-201ENST00000516331 125 ntBASIC-0.98□□□□□ -2.57
SEMA3DO95025 MIR4306-201ENST00000583390 91 ntBASIC-0.98□□□□□ -2.57
SEMA3DO95025 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.99□□□□□ -2.57
SEMA3DO95025 SNORD58C-201ENST00000365223 64 ntBASIC-0.99□□□□□ -2.57
SEMA3DO95025 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.99□□□□□ -2.57
SEMA3DO95025 MIR6854-201ENST00000614935 69 ntBASIC-0.99□□□□□ -2.57
SEMA3DO95025 RNU6-379P-201ENST00000363813 104 ntBASIC-1□□□□□ -2.57
SEMA3DO95025 RNU6-694P-201ENST00000364071 147 ntBASIC-1□□□□□ -2.57
SEMA3DO95025 MIR569-201ENST00000385228 96 ntBASIC-1□□□□□ -2.57
SEMA3DO95025 RNU6-1236P-201ENST00000517080 99 ntBASIC-1□□□□□ -2.57
SEMA3DO95025 AL513043.2-201ENST00000573941 143 ntBASIC-1□□□□□ -2.57
SEMA3DO95025 AC004792.1-201ENST00000614523 137 ntBASIC-1□□□□□ -2.57
SEMA3DO95025 RNU6-132P-201ENST00000383863 107 ntBASIC-1.01□□□□□ -2.57
SEMA3DO95025 RNU6-463P-201ENST00000384340 107 ntBASIC-1.01□□□□□ -2.57
SEMA3DO95025 MIR1207-201ENST00000408249 87 ntBASIC-1.01□□□□□ -2.57
SEMA3DO95025 SCARNA18B-201ENST00000458806 135 ntBASIC-1.01□□□□□ -2.57
SEMA3DO95025 RNU6-388P-201ENST00000517012 105 ntBASIC-1.01□□□□□ -2.57
SEMA3DO95025 RNU6-389P-201ENST00000517048 105 ntBASIC-1.01□□□□□ -2.57
SEMA3DO95025 MIR6773-201ENST00000612812 74 ntBASIC-1.01□□□□□ -2.57
SEMA3DO95025 Y_RNA.398-201ENST00000383952 99 ntBASIC-1.02□□□□□ -2.57
SEMA3DO95025 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.02□□□□□ -2.57
SEMA3DO95025 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.02□□□□□ -2.57
SEMA3DO95025 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.02□□□□□ -2.57
SEMA3DO95025 MIR4694-201ENST00000578534 80 ntBASIC-1.02□□□□□ -2.57
SEMA3DO95025 MIR3140-201ENST00000583685 90 ntBASIC-1.02□□□□□ -2.57
SEMA3DO95025 snoR1.1-201ENST00000628177 80 ntBASIC-1.02□□□□□ -2.57
SEMA3DO95025 RNU6-832P-201ENST00000363319 107 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 MIR517B-201ENST00000385102 67 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.03□□□□□ -2.57
SEMA3DO95025 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 AP000533.3-201ENST00000447704 118 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 AC022137.1-201ENST00000483735 151 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 AC021146.9-201ENST00000512503 156 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 RNU6-706P-201ENST00000517229 104 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 AC140658.3-201ENST00000567603 271 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 MIR3144-201ENST00000579460 79 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 MIR3613-201ENST00000579844 87 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 AL035470.1-201ENST00000622571 220 ntBASIC-1.03□□□□□ -2.57
SEMA3DO95025 RNY4P27-201ENST00000363341 96 ntBASIC-1.04□□□□□ -2.58
SEMA3DO95025 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.04□□□□□ -2.58
SEMA3DO95025 SNORA63.6-201ENST00000364921 119 ntBASIC-1.04□□□□□ -2.58
SEMA3DO95025 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.04□□□□□ -2.58
SEMA3DO95025 RNU6-337P-201ENST00000391243 106 ntBASIC-1.04□□□□□ -2.58
SEMA3DO95025 SNORA63.2-201ENST00000362603 126 ntBASIC-1.05□□□□□ -2.58
SEMA3DO95025 RNU6-495P-201ENST00000362995 107 ntBASIC-1.05□□□□□ -2.58
SEMA3DO95025 MIR8485-201ENST00000401372 91 ntBASIC-1.05□□□□□ -2.58
SEMA3DO95025 RNU6-592P-201ENST00000411333 103 ntBASIC-1.05□□□□□ -2.58
SEMA3DO95025 HLA-S-202ENST00000425174 53 ntBASIC-1.05□□□□□ -2.58
SEMA3DO95025 MIR6129-201ENST00000616087 109 ntBASIC-1.05□□□□□ -2.58
SEMA3DO95025 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.06□□□□□ -2.58
SEMA3DO95025 RNY3P2-201ENST00000362918 102 ntBASIC-1.06□□□□□ -2.58
SEMA3DO95025 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.06□□□□□ -2.58
SEMA3DO95025 RNU6-905P-201ENST00000384434 107 ntBASIC-1.06□□□□□ -2.58
SEMA3DO95025 MIRLET7B-201ENST00000385140 83 ntBASIC-1.06□□□□□ -2.58
SEMA3DO95025 MIR3064-201ENST00000581130 66 ntBASIC-1.06□□□□□ -2.58
SEMA3DO95025 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.07□□□□□ -2.58
SEMA3DO95025 RNU6-990P-201ENST00000364385 104 ntBASIC-1.07□□□□□ -2.58
SEMA3DO95025 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.07□□□□□ -2.58
SEMA3DO95025 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.07□□□□□ -2.58
SEMA3DO95025 RNU6-426P-201ENST00000516464 97 ntBASIC-1.07□□□□□ -2.58
SEMA3DO95025 AC026421.1-201ENST00000519101 163 ntBASIC-1.07□□□□□ -2.58
SEMA3DO95025 SNORD74.6-201ENST00000364796 70 ntBASIC-1.08□□□□□ -2.58
SEMA3DO95025 RNU6-540P-201ENST00000384622 101 ntBASIC-1.08□□□□□ -2.58
SEMA3DO95025 MIR548U-201ENST00000390728 81 ntBASIC-1.08□□□□□ -2.58
SEMA3DO95025 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.08□□□□□ -2.58
SEMA3DO95025 MTND5P41-201ENST00000517498 206 ntBASIC-1.08□□□□□ -2.58
SEMA3DO95025 AC068339.1-201ENST00000526965 141 ntBASIC-1.08□□□□□ -2.58
SEMA3DO95025 AC103810.7-201ENST00000607821 91 ntBASIC-1.08□□□□□ -2.58
SEMA3DO95025 SNORD115-23-201ENST00000364461 82 ntBASIC-1.09□□□□□ -2.58
SEMA3DO95025 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.09□□□□□ -2.58
SEMA3DO95025 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.09□□□□□ -2.58
SEMA3DO95025 SNORD64-201ENST00000386683 67 ntBASIC-1.09□□□□□ -2.58
SEMA3DO95025 RNU6-772P-201ENST00000516042 105 ntBASIC-1.09□□□□□ -2.58
SEMA3DO95025 MIR4679-2-201ENST00000578358 77 ntBASIC-1.09□□□□□ -2.58
SEMA3DO95025 AC104996.3-201ENST00000590718 94 ntBASIC-1.09□□□□□ -2.58
SEMA3DO95025 RNU6-431P-201ENST00000383874 107 ntBASIC-1.1□□□□□ -2.59
SEMA3DO95025 SNORA24B-201ENST00000384176 131 ntBASIC-1.1□□□□□ -2.59
SEMA3DO95025 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.1□□□□□ -2.59
SEMA3DO95025 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.1□□□□□ -2.59
SEMA3DO95025 MTND4LP9-201ENST00000427694 174 ntBASIC-1.1□□□□□ -2.59
SEMA3DO95025 AL157777.2-201ENST00000258070 137 ntBASIC-1.11□□□□□ -2.59
SEMA3DO95025 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.11□□□□□ -2.59
SEMA3DO95025 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.11□□□□□ -2.59
SEMA3DO95025 RNU6-813P-201ENST00000384691 107 ntBASIC-1.11□□□□□ -2.59
SEMA3DO95025 RNU6-644P-201ENST00000391155 98 ntBASIC-1.11□□□□□ -2.59
SEMA3DO95025 SNORD4B-201ENST00000459083 72 ntBASIC-1.11□□□□□ -2.59
SEMA3DO95025 MIR4439-201ENST00000583746 80 ntBASIC-1.11□□□□□ -2.59
SEMA3DO95025 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.12□□□□□ -2.59
SEMA3DO95025 SNORD45B-201ENST00000364617 72 ntBASIC-1.12□□□□□ -2.59
SEMA3DO95025 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.12□□□□□ -2.59
SEMA3DO95025 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.12□□□□□ -2.59
SEMA3DO95025 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.12□□□□□ -2.59
SEMA3DO95025 SNORD18.2-201ENST00000459604 70 ntBASIC-1.12□□□□□ -2.59
SEMA3DO95025 SNORD90-201ENST00000391145 111 ntBASIC-1.13□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 309 ms