Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MIR1197-201ENST00000408818 88 ntBASIC0.43□□□□□ -2.34
LMX1BO60663 RNU2-59P-201ENST00000410482 191 ntBASIC0.43□□□□□ -2.34
LMX1BO60663 SNORA68.3-201ENST00000515906 83 ntBASIC0.43□□□□□ -2.34
LMX1BO60663 RNU6-1108P-201ENST00000516308 104 ntBASIC0.43□□□□□ -2.34
LMX1BO60663 RNU6-1057P-201ENST00000517162 102 ntBASIC0.43□□□□□ -2.34
LMX1BO60663 RNA5SP257-201ENST00000363023 116 ntBASIC0.42□□□□□ -2.34
LMX1BO60663 Y_RNA.219-201ENST00000364232 113 ntBASIC0.42□□□□□ -2.34
LMX1BO60663 RNU6-652P-201ENST00000365488 107 ntBASIC0.42□□□□□ -2.34
LMX1BO60663 Y_RNA.532-201ENST00000384590 113 ntBASIC0.42□□□□□ -2.34
LMX1BO60663 RNU6-129P-201ENST00000391022 107 ntBASIC0.42□□□□□ -2.34
LMX1BO60663 RNU6-863P-201ENST00000515989 104 ntBASIC0.42□□□□□ -2.34
LMX1BO60663 Y_RNA.681-201ENST00000516445 113 ntBASIC0.42□□□□□ -2.34
LMX1BO60663 MIRLET7A1-201ENST00000362295 80 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 Y_RNA.68-201ENST00000362881 102 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 RNU6-54P-201ENST00000365563 107 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 RNU6V-201ENST00000384105 107 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 RNU6-1124P-201ENST00000384169 107 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 SNORD78.1-201ENST00000390866 65 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 SNORD77.2-201ENST00000391045 68 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 HMGN2P22-201ENST00000427588 175 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 SNORD42B-201ENST00000458893 67 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 RNU5B-6P-201ENST00000516765 68 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 MIR4460-201ENST00000577862 86 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 AC069503.3-201ENST00000618674 145 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 AC073869.9-201ENST00000641610 120 ntBASIC0.41□□□□□ -2.34
LMX1BO60663 MIR103A1-201ENST00000362165 78 ntBASIC0.4□□□□□ -2.35
LMX1BO60663 RNU6-208P-201ENST00000362431 107 ntBASIC0.4□□□□□ -2.35
LMX1BO60663 RNU6-495P-201ENST00000362995 107 ntBASIC0.4□□□□□ -2.35
LMX1BO60663 RNY4P3-201ENST00000365254 95 ntBASIC0.4□□□□□ -2.35
LMX1BO60663 VTRNA1-3-201ENST00000365645 89 ntBASIC0.4□□□□□ -2.35
LMX1BO60663 MIR216B-201ENST00000390186 82 ntBASIC0.4□□□□□ -2.35
LMX1BO60663 RNU6-1177P-201ENST00000391058 104 ntBASIC0.4□□□□□ -2.35
LMX1BO60663 AC097510.1-201ENST00000510945 133 ntBASIC0.4□□□□□ -2.35
LMX1BO60663 MIR4712-201ENST00000583750 82 ntBASIC0.4□□□□□ -2.35
LMX1BO60663 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.39□□□□□ -2.35
LMX1BO60663 MIRLET7D-201ENST00000362263 87 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 RNU6-686P-201ENST00000364839 107 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 SNORD110-201ENST00000408189 75 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 MIR1255A-201ENST00000408338 113 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 Y_RNA.606-201ENST00000410579 103 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 SNORD71-201ENST00000411292 86 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 SNORA62.5-201ENST00000516634 120 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 MIR5706-201ENST00000579841 80 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 YWHAEP2-201ENST00000580066 112 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 MIR548AE1-201ENST00000583292 70 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 U6.81-201ENST00000612550 106 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 MIR3202-2-201ENST00000635980 79 ntBASIC0.39□□□□□ -2.35
LMX1BO60663 RNU5F-1-201ENST00000362507 117 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 RNU6-315P-201ENST00000362666 107 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 Y_RNA.178-201ENST00000363832 102 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 RNU6-382P-201ENST00000365181 106 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 Y_RNA.423-201ENST00000384057 113 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 RNU6-1275P-201ENST00000391087 107 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 RNU7-24P-201ENST00000458867 62 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 RNU6-848P-201ENST00000515948 107 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 Y_RNA.660-201ENST00000516002 120 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 RNU6-617P-201ENST00000516147 107 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 RNU6-473P-201ENST00000516164 107 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 RNU6-1049P-201ENST00000516414 107 ntBASIC0.38□□□□□ -2.35
LMX1BO60663 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.38□□□□□ -2.35
LMX1BO60663 RNU6-340P-201ENST00000364005 107 ntBASIC0.37□□□□□ -2.35
LMX1BO60663 AC006210.1-201ENST00000424882 111 ntBASIC0.37□□□□□ -2.35
LMX1BO60663 Y_RNA.12-201ENST00000362393 112 ntBASIC0.36□□□□□ -2.35
LMX1BO60663 Y_RNA.264-201ENST00000364665 102 ntBASIC0.36□□□□□ -2.35
LMX1BO60663 SNORA2A-201ENST00000383885 135 ntBASIC0.36□□□□□ -2.35
LMX1BO60663 MIR501-201ENST00000390204 84 ntBASIC0.36□□□□□ -2.35
LMX1BO60663 SNORD75.2-201ENST00000408784 58 ntBASIC0.36□□□□□ -2.35
LMX1BO60663 RNA5SP225-201ENST00000410874 135 ntBASIC0.36□□□□□ -2.35
LMX1BO60663 AC074348.1-201ENST00000426503 132 ntBASIC0.36□□□□□ -2.35
LMX1BO60663 YWHAEP3-201ENST00000582767 121 ntBASIC0.36□□□□□ -2.35
LMX1BO60663 Y_RNA.125-201ENST00000363371 111 ntBASIC0.35□□□□□ -2.35
LMX1BO60663 RNU6-279P-201ENST00000391297 101 ntBASIC0.35□□□□□ -2.35
LMX1BO60663 Y_RNA.685-201ENST00000516532 108 ntBASIC0.35□□□□□ -2.35
LMX1BO60663 SNORA40.17-201ENST00000517256 115 ntBASIC0.35□□□□□ -2.35
LMX1BO60663 Y_RNA.371-201ENST00000365591 113 ntBASIC0.34□□□□□ -2.36
LMX1BO60663 MIR4514-201ENST00000581410 57 ntBASIC0.34□□□□□ -2.36
LMX1BO60663 MIR4473-201ENST00000583731 91 ntBASIC0.34□□□□□ -2.36
LMX1BO60663 RNU6-330P-201ENST00000363015 107 ntBASIC0.33□□□□□ -2.36
LMX1BO60663 RNA5SP62-201ENST00000363457 110 ntBASIC0.33□□□□□ -2.36
LMX1BO60663 Y_RNA.433-201ENST00000384089 102 ntBASIC0.33□□□□□ -2.36
LMX1BO60663 MIR652-201ENST00000385278 98 ntBASIC0.33□□□□□ -2.36
LMX1BO60663 MIR760-201ENST00000390220 80 ntBASIC0.33□□□□□ -2.36
LMX1BO60663 RNU6-303P-201ENST00000517091 106 ntBASIC0.33□□□□□ -2.36
LMX1BO60663 MIR4677-201ENST00000584153 80 ntBASIC0.33□□□□□ -2.36
LMX1BO60663 MIR548AD-201ENST00000584780 82 ntBASIC0.33□□□□□ -2.36
LMX1BO60663 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.33□□□□□ -2.36
LMX1BO60663 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
LMX1BO60663 RNA5SP128-201ENST00000365305 116 ntBASIC0.32□□□□□ -2.36
LMX1BO60663 RNU6-815P-201ENST00000384080 113 ntBASIC0.32□□□□□ -2.36
LMX1BO60663 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
LMX1BO60663 RNU6-857P-201ENST00000515893 110 ntBASIC0.32□□□□□ -2.36
LMX1BO60663 MIR3925-201ENST00000584674 77 ntBASIC0.32□□□□□ -2.36
LMX1BO60663 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.32□□□□□ -2.36
LMX1BO60663 MIR4773-1-201ENST00000637203 78 ntBASIC0.32□□□□□ -2.36
LMX1BO60663 Y_RNA.407-201ENST00000383986 113 ntBASIC0.31□□□□□ -2.36
LMX1BO60663 RNU6-154P-201ENST00000384306 106 ntBASIC0.31□□□□□ -2.36
LMX1BO60663 SCARNA18B-201ENST00000458806 135 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms