Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNA5SP404-201ENST00000517118 132 ntBASIC1.48□□□□□ -2.17
CHMP3Q9Y3E7 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.48□□□□□ -2.17
CHMP3Q9Y3E7 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.48□□□□□ -2.17
CHMP3Q9Y3E7 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.47□□□□□ -2.17
CHMP3Q9Y3E7 MIR200A-201ENST00000384875 90 ntBASIC1.47□□□□□ -2.17
CHMP3Q9Y3E7 MIR499A-201ENST00000384903 122 ntBASIC1.47□□□□□ -2.17
CHMP3Q9Y3E7 SNORD114-27-201ENST00000363766 70 ntBASIC1.46□□□□□ -2.18
CHMP3Q9Y3E7 SNORA25.8-201ENST00000364831 128 ntBASIC1.46□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-54P-201ENST00000365563 107 ntBASIC1.46□□□□□ -2.18
CHMP3Q9Y3E7 MIR618-201ENST00000385287 98 ntBASIC1.46□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-274P-201ENST00000459566 107 ntBASIC1.46□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-539P-201ENST00000516665 103 ntBASIC1.46□□□□□ -2.18
CHMP3Q9Y3E7 NAMPTP3-201ENST00000569273 224 ntBASIC1.46□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-716P-201ENST00000365621 103 ntBASIC1.45□□□□□ -2.18
CHMP3Q9Y3E7 SNORD41.1-201ENST00000391000 69 ntBASIC1.45□□□□□ -2.18
CHMP3Q9Y3E7 MIR548L-201ENST00000408303 86 ntBASIC1.45□□□□□ -2.18
CHMP3Q9Y3E7 MIR1276-201ENST00000408707 83 ntBASIC1.45□□□□□ -2.18
CHMP3Q9Y3E7 RNA5SP47-201ENST00000517230 109 ntBASIC1.45□□□□□ -2.18
CHMP3Q9Y3E7 MIR548O2-201ENST00000616090 70 ntBASIC1.45□□□□□ -2.18
CHMP3Q9Y3E7 SNORD45A-201ENST00000384512 84 ntBASIC1.44□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-939P-201ENST00000384634 107 ntBASIC1.44□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-135P-201ENST00000516769 101 ntBASIC1.44□□□□□ -2.18
CHMP3Q9Y3E7 SNORD45.1-201ENST00000363181 77 ntBASIC1.43□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-726P-201ENST00000364680 107 ntBASIC1.43□□□□□ -2.18
CHMP3Q9Y3E7 SNORD30.1-201ENST00000391309 70 ntBASIC1.43□□□□□ -2.18
CHMP3Q9Y3E7 AC244098.3-201ENST00000424803 96 ntBASIC1.43□□□□□ -2.18
CHMP3Q9Y3E7 RNA5SP255-201ENST00000516370 107 ntBASIC1.43□□□□□ -2.18
CHMP3Q9Y3E7 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.43□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-495P-201ENST00000362995 107 ntBASIC1.42□□□□□ -2.18
CHMP3Q9Y3E7 RNU1-124P-201ENST00000363861 145 ntBASIC1.42□□□□□ -2.18
CHMP3Q9Y3E7 RNU6V-201ENST00000384105 107 ntBASIC1.42□□□□□ -2.18
CHMP3Q9Y3E7 SNORD99-201ENST00000408612 74 ntBASIC1.42□□□□□ -2.18
CHMP3Q9Y3E7 SNORD75.2-201ENST00000408784 58 ntBASIC1.42□□□□□ -2.18
CHMP3Q9Y3E7 MIR4295-201ENST00000585286 85 ntBASIC1.42□□□□□ -2.18
CHMP3Q9Y3E7 MIR96-201ENST00000362288 78 ntBASIC1.41□□□□□ -2.18
CHMP3Q9Y3E7 Y_RNA.224-201ENST00000364308 111 ntBASIC1.41□□□□□ -2.18
CHMP3Q9Y3E7 SNORD115-22-201ENST00000364456 82 ntBASIC1.41□□□□□ -2.18
CHMP3Q9Y3E7 SNORD114-24-201ENST00000365029 72 ntBASIC1.41□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-649P-201ENST00000384463 107 ntBASIC1.41□□□□□ -2.18
CHMP3Q9Y3E7 RNU6-604P-201ENST00000390917 100 ntBASIC1.41□□□□□ -2.18
CHMP3Q9Y3E7 AC093423.1-201ENST00000440817 142 ntBASIC1.41□□□□□ -2.18
CHMP3Q9Y3E7 AC087343.1-201ENST00000477341 475 ntBASIC1.41□□□□□ -2.18
CHMP3Q9Y3E7 AC011195.1-201ENST00000578177 177 ntBASIC1.41□□□□□ -2.18
CHMP3Q9Y3E7 AL691482.2-201ENST00000457453 84 ntBASIC1.4□□□□□ -2.19
CHMP3Q9Y3E7 SNORD42B-201ENST00000458893 67 ntBASIC1.4□□□□□ -2.19
CHMP3Q9Y3E7 MIR6504-201ENST00000613520 61 ntBASIC1.4□□□□□ -2.19
CHMP3Q9Y3E7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.19
CHMP3Q9Y3E7 RNU6-590P-201ENST00000365039 107 ntBASIC1.39□□□□□ -2.19
CHMP3Q9Y3E7 MIR203A-201ENST00000384836 110 ntBASIC1.39□□□□□ -2.19
CHMP3Q9Y3E7 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
CHMP3Q9Y3E7 OR2A41P-201ENST00000473586 105 ntBASIC1.39□□□□□ -2.19
CHMP3Q9Y3E7 AC025627.3-201ENST00000582078 182 ntBASIC1.39□□□□□ -2.19
CHMP3Q9Y3E7 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
CHMP3Q9Y3E7 MIR216B-201ENST00000390186 82 ntBASIC1.38□□□□□ -2.19
CHMP3Q9Y3E7 RNU6-269P-201ENST00000391077 97 ntBASIC1.38□□□□□ -2.19
CHMP3Q9Y3E7 RNU6-663P-201ENST00000391105 106 ntBASIC1.38□□□□□ -2.19
CHMP3Q9Y3E7 SCARNA16.5-201ENST00000517114 183 ntBASIC1.38□□□□□ -2.19
CHMP3Q9Y3E7 MIR18A-201ENST00000362310 71 ntBASIC1.37□□□□□ -2.19
CHMP3Q9Y3E7 Y_RNA.386-201ENST00000383913 105 ntBASIC1.37□□□□□ -2.19
CHMP3Q9Y3E7 RNU7-24P-201ENST00000458867 62 ntBASIC1.37□□□□□ -2.19
CHMP3Q9Y3E7 SNORD114-22-201ENST00000365423 72 ntBASIC1.36□□□□□ -2.19
CHMP3Q9Y3E7 RNU6-1039P-201ENST00000383931 107 ntBASIC1.36□□□□□ -2.19
CHMP3Q9Y3E7 RNU7-74P-201ENST00000459104 62 ntBASIC1.36□□□□□ -2.19
CHMP3Q9Y3E7 RNU6-752P-201ENST00000516376 102 ntBASIC1.36□□□□□ -2.19
CHMP3Q9Y3E7 RNU6-881P-201ENST00000516813 102 ntBASIC1.36□□□□□ -2.19
CHMP3Q9Y3E7 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
CHMP3Q9Y3E7 SNORA36.1-201ENST00000363424 132 ntBASIC1.35□□□□□ -2.19
CHMP3Q9Y3E7 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CHMP3Q9Y3E7 MT-TY-201ENST00000387409 66 ntBASIC1.35□□□□□ -2.19
CHMP3Q9Y3E7 MIR4452-201ENST00000583004 71 ntBASIC1.35□□□□□ -2.19
CHMP3Q9Y3E7 MIR6509-201ENST00000614603 85 ntBASIC1.35□□□□□ -2.19
CHMP3Q9Y3E7 U6.111-201ENST00000636093 83 ntBASIC1.35□□□□□ -2.19
CHMP3Q9Y3E7 MIR1285-1-201ENST00000408593 84 ntBASIC1.34□□□□□ -2.19
CHMP3Q9Y3E7 RNA5SP484-201ENST00000458857 111 ntBASIC1.34□□□□□ -2.19
CHMP3Q9Y3E7 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.34□□□□□ -2.19
CHMP3Q9Y3E7 MIR4460-201ENST00000577862 86 ntBASIC1.34□□□□□ -2.19
CHMP3Q9Y3E7 SNORD113.1-201ENST00000363280 73 ntBASIC1.33□□□□□ -2.2
CHMP3Q9Y3E7 RNU1-141P-201ENST00000364623 158 ntBASIC1.33□□□□□ -2.2
CHMP3Q9Y3E7 RNU6-895P-201ENST00000384125 103 ntBASIC1.33□□□□□ -2.2
CHMP3Q9Y3E7 MIR8053-201ENST00000613344 75 ntBASIC1.33□□□□□ -2.2
CHMP3Q9Y3E7 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.32□□□□□ -2.2
CHMP3Q9Y3E7 RNU5B-6P-201ENST00000516765 68 ntBASIC1.32□□□□□ -2.2
CHMP3Q9Y3E7 SNORD114-21-201ENST00000606412 72 ntBASIC1.32□□□□□ -2.2
CHMP3Q9Y3E7 MIR6828-201ENST00000636181 60 ntBASIC1.32□□□□□ -2.2
CHMP3Q9Y3E7 RNY1P8-201ENST00000383970 114 ntBASIC1.31□□□□□ -2.2
CHMP3Q9Y3E7 RNA5SP227-201ENST00000516184 113 ntBASIC1.31□□□□□ -2.2
CHMP3Q9Y3E7 RNU6-982P-201ENST00000516216 102 ntBASIC1.31□□□□□ -2.2
CHMP3Q9Y3E7 Y_RNA.340-201ENST00000365330 92 ntBASIC1.3□□□□□ -2.2
CHMP3Q9Y3E7 RNU6-800P-201ENST00000384473 103 ntBASIC1.3□□□□□ -2.2
CHMP3Q9Y3E7 SNORD116-24-201ENST00000384549 92 ntBASIC1.3□□□□□ -2.2
CHMP3Q9Y3E7 RNA5SP94-201ENST00000516917 108 ntBASIC1.3□□□□□ -2.2
CHMP3Q9Y3E7 AC018659.1-201ENST00000551083 169 ntBASIC1.3□□□□□ -2.2
CHMP3Q9Y3E7 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
CHMP3Q9Y3E7 RNU6-990P-201ENST00000364385 104 ntBASIC1.29□□□□□ -2.2
CHMP3Q9Y3E7 MIR1265-201ENST00000408444 86 ntBASIC1.29□□□□□ -2.2
CHMP3Q9Y3E7 RNA5SP222-201ENST00000411039 105 ntBASIC1.29□□□□□ -2.2
CHMP3Q9Y3E7 AL162376.1-201ENST00000624117 175 ntBASIC1.29□□□□□ -2.2
CHMP3Q9Y3E7 MIR6767-201ENST00000637302 66 ntBASIC1.29□□□□□ -2.2
CHMP3Q9Y3E7 SNORA8.2-201ENST00000384372 139 ntBASIC1.28□□□□□ -2.2
CHMP3Q9Y3E7 RNA5SP268-201ENST00000516828 124 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 1016.8 ms