Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 HMGN2P22-201ENST00000427588 175 ntBASIC0.22□□□□□ -2.37
UPF3AQ9H1J1 AC073261.1-201ENST00000429409 121 ntBASIC0.22□□□□□ -2.37
UPF3AQ9H1J1 RNU6-848P-201ENST00000515948 107 ntBASIC0.22□□□□□ -2.37
UPF3AQ9H1J1 RNU6-617P-201ENST00000516147 107 ntBASIC0.22□□□□□ -2.37
UPF3AQ9H1J1 RNU6-473P-201ENST00000516164 107 ntBASIC0.22□□□□□ -2.37
UPF3AQ9H1J1 RNU6-1049P-201ENST00000516414 107 ntBASIC0.22□□□□□ -2.37
UPF3AQ9H1J1 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
UPF3AQ9H1J1 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.22□□□□□ -2.37
UPF3AQ9H1J1 RNA5SP128-201ENST00000365305 116 ntBASIC0.21□□□□□ -2.38
UPF3AQ9H1J1 RNU6-905P-201ENST00000384434 107 ntBASIC0.21□□□□□ -2.38
UPF3AQ9H1J1 AC026421.1-201ENST00000519101 163 ntBASIC0.21□□□□□ -2.38
UPF3AQ9H1J1 MIR4536-1-201ENST00000583537 88 ntBASIC0.21□□□□□ -2.38
UPF3AQ9H1J1 MIR499B-201ENST00000636498 73 ntBASIC0.21□□□□□ -2.38
UPF3AQ9H1J1 AC073869.9-201ENST00000641610 120 ntBASIC0.21□□□□□ -2.38
UPF3AQ9H1J1 RNU6-509P-201ENST00000363519 107 ntBASIC0.2□□□□□ -2.38
UPF3AQ9H1J1 Y_RNA.495-201ENST00000384435 112 ntBASIC0.2□□□□□ -2.38
UPF3AQ9H1J1 RNA5SP299-201ENST00000391203 116 ntBASIC0.2□□□□□ -2.38
UPF3AQ9H1J1 MIR5706-201ENST00000579841 80 ntBASIC0.2□□□□□ -2.38
UPF3AQ9H1J1 MIR3064-201ENST00000581130 66 ntBASIC0.2□□□□□ -2.38
UPF3AQ9H1J1 SNORD116-10-201ENST00000363791 102 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 RNU6-153P-201ENST00000364422 104 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 MIR488-201ENST00000365739 83 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 MIR329-2-201ENST00000385029 84 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 RNU6-127P-201ENST00000390897 107 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 SNORD110-201ENST00000408189 75 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 AC006210.1-201ENST00000424882 111 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 RNU7-74P-201ENST00000459104 62 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 RNU6-65P-201ENST00000516332 98 ntBASIC0.19□□□□□ -2.38
UPF3AQ9H1J1 RNU6-32P-201ENST00000383948 107 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 RNU6-13P-201ENST00000384248 107 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 RNU6-12P-201ENST00000384604 107 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 RNU6-41P-201ENST00000384741 107 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 RNA5SP292-201ENST00000390974 118 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 SNORD90-201ENST00000391145 111 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 MIR548H2-201ENST00000408874 88 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 RNU6-935P-201ENST00000410371 100 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 RNU6-519P-201ENST00000410590 108 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 RNA5SP476-201ENST00000516613 103 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 MIR548AD-201ENST00000584780 82 ntBASIC0.18□□□□□ -2.38
UPF3AQ9H1J1 SNORA9.1-201ENST00000362412 131 ntBASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 Y_RNA.96-201ENST00000363092 109 ntBASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 MT-TY-201ENST00000387409 66 ntBASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 Y_RNA.609-201ENST00000410669 89 ntBASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 HAR1A.1-201ENST00000459583 118 ntBASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 RNU7-129P-201ENST00000516128 62 ntBASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 MIR5190-201ENST00000581537 80 ntBASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 MIR4677-201ENST00000584153 80 ntBASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 AC104996.3-201ENST00000590718 94 ntBASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.17□□□□□ -2.38
UPF3AQ9H1J1 Y_RNA.81-201ENST00000362997 102 ntBASIC0.16□□□□□ -2.38
UPF3AQ9H1J1 Y_RNA.125-201ENST00000363371 111 ntBASIC0.16□□□□□ -2.38
UPF3AQ9H1J1 MIR451A-201ENST00000385059 72 ntBASIC0.16□□□□□ -2.38
UPF3AQ9H1J1 SNORA40.13-201ENST00000516379 120 ntBASIC0.16□□□□□ -2.38
UPF3AQ9H1J1 MIR548AE1-201ENST00000583292 70 ntBASIC0.16□□□□□ -2.38
UPF3AQ9H1J1 MIR3925-201ENST00000584674 77 ntBASIC0.16□□□□□ -2.38
UPF3AQ9H1J1 MALAT1.1-201ENST00000618249 95 ntBASIC0.16□□□□□ -2.38
UPF3AQ9H1J1 AC069503.3-201ENST00000618674 145 ntBASIC0.16□□□□□ -2.38
UPF3AQ9H1J1 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.16□□□□□ -2.38
UPF3AQ9H1J1 RNU6-161P-201ENST00000363051 106 ntBASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 Y_RNA.239-201ENST00000364444 113 ntBASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 RNA5SP89-201ENST00000410300 108 ntBASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 RNU5B-6P-201ENST00000516765 68 ntBASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 MIR4460-201ENST00000577862 86 ntBASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 YWHAEP2-201ENST00000580066 112 ntBASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 MIR548O2-201ENST00000616090 70 ntBASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 MIR4315-1-201ENST00000636800 73 ntBASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 MIR4315-2-201ENST00000640925 73 ntBASIC0.15□□□□□ -2.39
UPF3AQ9H1J1 RNU6-811P-201ENST00000384069 107 ntBASIC0.14□□□□□ -2.39
UPF3AQ9H1J1 RNU6-168P-201ENST00000516189 101 ntBASIC0.14□□□□□ -2.39
UPF3AQ9H1J1 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.14□□□□□ -2.39
UPF3AQ9H1J1 MIR3140-201ENST00000583685 90 ntBASIC0.14□□□□□ -2.39
UPF3AQ9H1J1 MIR4473-201ENST00000583731 91 ntBASIC0.14□□□□□ -2.39
UPF3AQ9H1J1 MIR2052-201ENST00000636055 55 ntBASIC0.14□□□□□ -2.39
UPF3AQ9H1J1 MIR6086-201ENST00000638065 55 ntBASIC0.14□□□□□ -2.39
UPF3AQ9H1J1 SNORA42.1-201ENST00000363515 137 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 SNORD115-27-201ENST00000364430 82 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 Y_RNA.491-201ENST00000384417 107 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 RNY1P7-201ENST00000384743 110 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 MIR643-201ENST00000385267 97 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 RNU6-1052P-201ENST00000411398 104 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 SNORA25.13-201ENST00000516395 103 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 RNU6-719P-201ENST00000516671 104 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 MIR6759-201ENST00000638110 65 ntBASIC0.13□□□□□ -2.39
UPF3AQ9H1J1 RNU4-32P-201ENST00000363404 141 ntBASIC0.12□□□□□ -2.39
UPF3AQ9H1J1 RNU6V-201ENST00000384105 107 ntBASIC0.12□□□□□ -2.39
UPF3AQ9H1J1 SNORA24B-201ENST00000384176 131 ntBASIC0.12□□□□□ -2.39
UPF3AQ9H1J1 Y_RNA.677-201ENST00000516401 85 ntBASIC0.12□□□□□ -2.39
UPF3AQ9H1J1 SNORA18.5-201ENST00000516616 101 ntBASIC0.12□□□□□ -2.39
UPF3AQ9H1J1 RNU6-782P-201ENST00000516852 104 ntBASIC0.12□□□□□ -2.39
UPF3AQ9H1J1 AC104408.1-201ENST00000605241 170 ntBASIC0.12□□□□□ -2.39
UPF3AQ9H1J1 SNORD114-9-201ENST00000364370 72 ntBASIC0.11□□□□□ -2.39
UPF3AQ9H1J1 MIR548U-201ENST00000390728 81 ntBASIC0.11□□□□□ -2.39
UPF3AQ9H1J1 FGF7P7-201ENST00000514120 227 ntBASIC0.11□□□□□ -2.39
UPF3AQ9H1J1 MIR4768-201ENST00000585270 74 ntBASIC0.11□□□□□ -2.39
UPF3AQ9H1J1 RNA5SP214-201ENST00000363378 118 ntBASIC0.1□□□□□ -2.39
UPF3AQ9H1J1 RNU6-54P-201ENST00000365563 107 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 270.5 ms