Protein–RNA interactions for Protein: Q9C0A0

CNTNAP4, Contactin-associated protein-like 4, humanhuman

Predictions only

Length 1,308 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP4Q9C0A0 U6.59-201ENST00000615686 107 ntBASIC1.6□□□□□ -2.15
CNTNAP4Q9C0A0 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
CNTNAP4Q9C0A0 Y_RNA.236-201ENST00000364427 111 ntBASIC1.59□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-364P-201ENST00000384387 107 ntBASIC1.59□□□□□ -2.16
CNTNAP4Q9C0A0 MIR4676-201ENST00000583078 72 ntBASIC1.59□□□□□ -2.16
CNTNAP4Q9C0A0 MIR4773-1-201ENST00000637203 78 ntBASIC1.59□□□□□ -2.16
CNTNAP4Q9C0A0 Y_RNA.363-201ENST00000365529 113 ntBASIC1.58□□□□□ -2.16
CNTNAP4Q9C0A0 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
CNTNAP4Q9C0A0 SNORD79.1-201ENST00000516069 84 ntBASIC1.58□□□□□ -2.16
CNTNAP4Q9C0A0 AC027335.2-201ENST00000624030 375 ntBASIC1.58□□□□□ -2.16
CNTNAP4Q9C0A0 MIR216A-201ENST00000385063 110 ntBASIC1.57□□□□□ -2.16
CNTNAP4Q9C0A0 HAR1A.1-201ENST00000459583 118 ntBASIC1.57□□□□□ -2.16
CNTNAP4Q9C0A0 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 MIR222-201ENST00000384992 110 ntBASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 MIR758-201ENST00000390227 88 ntBASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-910P-201ENST00000390844 107 ntBASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 AC244098.3-201ENST00000424803 96 ntBASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-287P-201ENST00000516230 98 ntBASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 AC068338.1-201ENST00000565567 176 ntBASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 AC069503.3-201ENST00000618674 145 ntBASIC1.56□□□□□ -2.16
CNTNAP4Q9C0A0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-446P-201ENST00000362827 106 ntBASIC1.55□□□□□ -2.16
CNTNAP4Q9C0A0 SNORA70.22-201ENST00000517160 124 ntBASIC1.55□□□□□ -2.16
CNTNAP4Q9C0A0 MIR548AG2-201ENST00000581228 64 ntBASIC1.55□□□□□ -2.16
CNTNAP4Q9C0A0 MIR1-1-201ENST00000362147 71 ntBASIC1.54□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-1079P-201ENST00000362861 110 ntBASIC1.54□□□□□ -2.16
CNTNAP4Q9C0A0 RNA5SP457-201ENST00000363657 124 ntBASIC1.54□□□□□ -2.16
CNTNAP4Q9C0A0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.54□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-994P-201ENST00000410507 111 ntBASIC1.54□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-274P-201ENST00000459566 107 ntBASIC1.54□□□□□ -2.16
CNTNAP4Q9C0A0 RNU7-40P-201ENST00000516397 64 ntBASIC1.54□□□□□ -2.16
CNTNAP4Q9C0A0 AC092634.7-201ENST00000621022 103 ntBASIC1.54□□□□□ -2.16
CNTNAP4Q9C0A0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-535P-201ENST00000384722 107 ntBASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 AC244505.6-201ENST00000452829 130 ntBASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 RNU7-56P-201ENST00000458744 62 ntBASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-752P-201ENST00000516376 102 ntBASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 AC023827.1-201ENST00000569247 97 ntBASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 MIR4804-201ENST00000581683 73 ntBASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 MIR3920-201ENST00000581751 86 ntBASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 AC008608.1-201ENST00000603910 127 ntBASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
CNTNAP4Q9C0A0 RNU6-369P-201ENST00000362515 102 ntBASIC1.52□□□□□ -2.17
CNTNAP4Q9C0A0 RNU1-119P-201ENST00000391122 165 ntBASIC1.52□□□□□ -2.17
CNTNAP4Q9C0A0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.52□□□□□ -2.17
CNTNAP4Q9C0A0 AC067940.1-201ENST00000458411 300 ntBASIC1.52□□□□□ -2.17
CNTNAP4Q9C0A0 NAMPTP3-201ENST00000569273 224 ntBASIC1.52□□□□□ -2.17
CNTNAP4Q9C0A0 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.52□□□□□ -2.17
CNTNAP4Q9C0A0 Y_RNA.174-201ENST00000363781 105 ntBASIC1.51□□□□□ -2.17
CNTNAP4Q9C0A0 RNA5SP192-201ENST00000364404 120 ntBASIC1.51□□□□□ -2.17
CNTNAP4Q9C0A0 Y_RNA.375-201ENST00000365625 101 ntBASIC1.51□□□□□ -2.17
CNTNAP4Q9C0A0 RNU7-102P-201ENST00000458948 62 ntBASIC1.51□□□□□ -2.17
CNTNAP4Q9C0A0 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.51□□□□□ -2.17
CNTNAP4Q9C0A0 RNU6-495P-201ENST00000362995 107 ntBASIC1.5□□□□□ -2.17
CNTNAP4Q9C0A0 SNORD113-4-201ENST00000364802 75 ntBASIC1.5□□□□□ -2.17
CNTNAP4Q9C0A0 RNU6-997P-201ENST00000384725 107 ntBASIC1.5□□□□□ -2.17
CNTNAP4Q9C0A0 U3.27-201ENST00000391237 200 ntBASIC1.5□□□□□ -2.17
CNTNAP4Q9C0A0 SNORD75.2-201ENST00000408784 58 ntBASIC1.5□□□□□ -2.17
CNTNAP4Q9C0A0 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.5□□□□□ -2.17
CNTNAP4Q9C0A0 SNORA40.17-201ENST00000517256 115 ntBASIC1.5□□□□□ -2.17
CNTNAP4Q9C0A0 MIR7978-201ENST00000636158 59 ntBASIC1.5□□□□□ -2.17
CNTNAP4Q9C0A0 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CNTNAP4Q9C0A0 SNORD115-44-201ENST00000365391 82 ntBASIC1.49□□□□□ -2.17
CNTNAP4Q9C0A0 MIR203A-201ENST00000384836 110 ntBASIC1.49□□□□□ -2.17
CNTNAP4Q9C0A0 MIR100-201ENST00000385259 80 ntBASIC1.49□□□□□ -2.17
CNTNAP4Q9C0A0 AL691482.2-201ENST00000457453 84 ntBASIC1.49□□□□□ -2.17
CNTNAP4Q9C0A0 AL136317.1-201ENST00000612653 226 ntBASIC1.49□□□□□ -2.17
CNTNAP4Q9C0A0 SNORA25.5-201ENST00000363782 126 ntBASIC1.48□□□□□ -2.17
CNTNAP4Q9C0A0 RNU6-1039P-201ENST00000383931 107 ntBASIC1.48□□□□□ -2.17
CNTNAP4Q9C0A0 MIR1827-201ENST00000408549 66 ntBASIC1.48□□□□□ -2.17
CNTNAP4Q9C0A0 RNU7-24P-201ENST00000458867 62 ntBASIC1.48□□□□□ -2.17
CNTNAP4Q9C0A0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.48□□□□□ -2.17
CNTNAP4Q9C0A0 Y_RNA.115-201ENST00000363272 98 ntBASIC1.47□□□□□ -2.17
CNTNAP4Q9C0A0 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
CNTNAP4Q9C0A0 RNU6-542P-201ENST00000516405 103 ntBASIC1.47□□□□□ -2.17
CNTNAP4Q9C0A0 RNU6-1057P-201ENST00000517162 102 ntBASIC1.47□□□□□ -2.17
CNTNAP4Q9C0A0 MIR466-201ENST00000580653 84 ntBASIC1.47□□□□□ -2.17
CNTNAP4Q9C0A0 RNU6-668P-201ENST00000364180 107 ntBASIC1.46□□□□□ -2.18
CNTNAP4Q9C0A0 RNU6-1126P-201ENST00000384002 107 ntBASIC1.46□□□□□ -2.18
CNTNAP4Q9C0A0 MIR193B-201ENST00000384907 83 ntBASIC1.46□□□□□ -2.18
CNTNAP4Q9C0A0 SNORD42B-201ENST00000458893 67 ntBASIC1.46□□□□□ -2.18
CNTNAP4Q9C0A0 AC087343.1-201ENST00000477341 475 ntBASIC1.46□□□□□ -2.18
CNTNAP4Q9C0A0 MIR5000-201ENST00000577717 103 ntBASIC1.46□□□□□ -2.18
CNTNAP4Q9C0A0 MIR4295-201ENST00000585286 85 ntBASIC1.46□□□□□ -2.18
CNTNAP4Q9C0A0 AC073869.9-201ENST00000641610 120 ntBASIC1.46□□□□□ -2.18
CNTNAP4Q9C0A0 RNA5SP403-201ENST00000363598 108 ntBASIC1.45□□□□□ -2.18
CNTNAP4Q9C0A0 RNU6-54P-201ENST00000365563 107 ntBASIC1.45□□□□□ -2.18
CNTNAP4Q9C0A0 SCARNA21.1-201ENST00000515996 128 ntBASIC1.45□□□□□ -2.18
CNTNAP4Q9C0A0 MIR1273G-201ENST00000577677 100 ntBASIC1.45□□□□□ -2.18
CNTNAP4Q9C0A0 MIR6509-201ENST00000614603 85 ntBASIC1.45□□□□□ -2.18
CNTNAP4Q9C0A0 Y_RNA.32-201ENST00000362589 110 ntBASIC1.44□□□□□ -2.18
CNTNAP4Q9C0A0 RNU6-645P-201ENST00000364649 106 ntBASIC1.44□□□□□ -2.18
CNTNAP4Q9C0A0 MIR216B-201ENST00000390186 82 ntBASIC1.44□□□□□ -2.18
CNTNAP4Q9C0A0 AC002429.1-201ENST00000437672 148 ntBASIC1.44□□□□□ -2.18
CNTNAP4Q9C0A0 RNU6-135P-201ENST00000516769 101 ntBASIC1.44□□□□□ -2.18
CNTNAP4Q9C0A0 RNU7-161P-201ENST00000517289 62 ntBASIC1.44□□□□□ -2.18
CNTNAP4Q9C0A0 MIR3657-201ENST00000584818 117 ntBASIC1.44□□□□□ -2.18
CNTNAP4Q9C0A0 uc_338.16-201ENST00000621804 95 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms