Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL157777.2-201ENST00000258070 137 ntBASIC-0.89□□□□□ -2.55
CHMP4AQ9BY43 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.89□□□□□ -2.55
CHMP4AQ9BY43 AC114755.3-201ENST00000481111 251 ntBASIC-0.89□□□□□ -2.55
CHMP4AQ9BY43 RNU6-65P-201ENST00000516332 98 ntBASIC-0.89□□□□□ -2.55
CHMP4AQ9BY43 Y_RNA.343-201ENST00000365354 112 ntBASIC-0.9□□□□□ -2.55
CHMP4AQ9BY43 RNU4-63P-201ENST00000411313 118 ntBASIC-0.9□□□□□ -2.55
CHMP4AQ9BY43 RNU6-1211P-201ENST00000459179 105 ntBASIC-0.9□□□□□ -2.55
CHMP4AQ9BY43 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.9□□□□□ -2.55
CHMP4AQ9BY43 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.9□□□□□ -2.55
CHMP4AQ9BY43 MIR4694-201ENST00000578534 80 ntBASIC-0.9□□□□□ -2.55
CHMP4AQ9BY43 AL035470.1-201ENST00000622571 220 ntBASIC-0.9□□□□□ -2.55
CHMP4AQ9BY43 RNU6-901P-201ENST00000384593 106 ntBASIC-0.91□□□□□ -2.56
CHMP4AQ9BY43 AL445193.1-201ENST00000441183 141 ntBASIC-0.91□□□□□ -2.56
CHMP4AQ9BY43 MIR4536-1-201ENST00000583537 88 ntBASIC-0.91□□□□□ -2.56
CHMP4AQ9BY43 RNU6-54P-201ENST00000365563 107 ntBASIC-0.92□□□□□ -2.56
CHMP4AQ9BY43 MIR9-2-201ENST00000384838 87 ntBASIC-0.92□□□□□ -2.56
CHMP4AQ9BY43 RNA5SP67-201ENST00000516422 131 ntBASIC-0.92□□□□□ -2.56
CHMP4AQ9BY43 RNU6-832P-201ENST00000363319 107 ntBASIC-0.93□□□□□ -2.56
CHMP4AQ9BY43 RNU6-75P-201ENST00000515944 104 ntBASIC-0.93□□□□□ -2.56
CHMP4AQ9BY43 AL391099.1-201ENST00000624635 187 ntBASIC-0.93□□□□□ -2.56
CHMP4AQ9BY43 RNU7-200P-201ENST00000516105 62 ntBASIC-0.94□□□□□ -2.56
CHMP4AQ9BY43 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.94□□□□□ -2.56
CHMP4AQ9BY43 RNY3P2-201ENST00000362918 102 ntBASIC-0.95□□□□□ -2.56
CHMP4AQ9BY43 RNU6-900P-201ENST00000384498 102 ntBASIC-0.95□□□□□ -2.56
CHMP4AQ9BY43 RNU6-257P-201ENST00000410238 98 ntBASIC-0.95□□□□□ -2.56
CHMP4AQ9BY43 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.95□□□□□ -2.56
CHMP4AQ9BY43 AC093726.3-201ENST00000637588 150 ntBASIC-0.95□□□□□ -2.56
CHMP4AQ9BY43 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 SNORD115-25-201ENST00000362619 82 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 RNU7-107P-201ENST00000459121 61 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 FGF7P7-201ENST00000514120 227 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 RNU6-719P-201ENST00000516671 104 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 AC068339.1-201ENST00000526965 141 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 MIR4679-2-201ENST00000578358 77 ntBASIC-0.96□□□□□ -2.56
CHMP4AQ9BY43 SNORD114-14-201ENST00000362723 75 ntBASIC-0.97□□□□□ -2.56
CHMP4AQ9BY43 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.97□□□□□ -2.56
CHMP4AQ9BY43 U3.27-201ENST00000391237 200 ntBASIC-0.97□□□□□ -2.56
CHMP4AQ9BY43 SNORD114-4-201ENST00000363962 75 ntBASIC-0.98□□□□□ -2.57
CHMP4AQ9BY43 SNORD50.2-201ENST00000365465 70 ntBASIC-0.98□□□□□ -2.57
CHMP4AQ9BY43 AL513043.2-201ENST00000573941 143 ntBASIC-0.98□□□□□ -2.57
CHMP4AQ9BY43 AC090425.1-201ENST00000610007 140 ntBASIC-0.98□□□□□ -2.57
CHMP4AQ9BY43 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.99□□□□□ -2.57
CHMP4AQ9BY43 SNORA49-201ENST00000386157 136 ntBASIC-0.99□□□□□ -2.57
CHMP4AQ9BY43 SNORD2-201ENST00000459163 69 ntBASIC-1□□□□□ -2.57
CHMP4AQ9BY43 RNU6-346P-201ENST00000516288 111 ntBASIC-1□□□□□ -2.57
CHMP4AQ9BY43 MIR3681-201ENST00000580089 72 ntBASIC-1□□□□□ -2.57
CHMP4AQ9BY43 SNORD45B-201ENST00000364617 72 ntBASIC-1.01□□□□□ -2.57
CHMP4AQ9BY43 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.01□□□□□ -2.57
CHMP4AQ9BY43 MIR548A1-201ENST00000385041 97 ntBASIC-1.01□□□□□ -2.57
CHMP4AQ9BY43 snosnR66.1-201ENST00000391095 99 ntBASIC-1.01□□□□□ -2.57
CHMP4AQ9BY43 snoU13.13-201ENST00000458842 104 ntBASIC-1.01□□□□□ -2.57
CHMP4AQ9BY43 RNU6-971P-201ENST00000516920 106 ntBASIC-1.01□□□□□ -2.57
CHMP4AQ9BY43 MIR3613-201ENST00000579844 87 ntBASIC-1.01□□□□□ -2.57
CHMP4AQ9BY43 MIR582-201ENST00000365731 98 ntBASIC-1.02□□□□□ -2.57
CHMP4AQ9BY43 SNORD56B-201ENST00000384713 71 ntBASIC-1.02□□□□□ -2.57
CHMP4AQ9BY43 MIR204-201ENST00000385200 110 ntBASIC-1.02□□□□□ -2.57
CHMP4AQ9BY43 MT-TQ-201ENST00000387372 72 ntBASIC-1.02□□□□□ -2.57
CHMP4AQ9BY43 RNU7-85P-201ENST00000458851 63 ntBASIC-1.02□□□□□ -2.57
CHMP4AQ9BY43 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.03□□□□□ -2.57
CHMP4AQ9BY43 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.03□□□□□ -2.57
CHMP4AQ9BY43 MIR4439-201ENST00000583746 80 ntBASIC-1.03□□□□□ -2.57
CHMP4AQ9BY43 MIR548E-201ENST00000408287 88 ntBASIC-1.04□□□□□ -2.58
CHMP4AQ9BY43 MIR5009-201ENST00000578736 100 ntBASIC-1.04□□□□□ -2.58
CHMP4AQ9BY43 MIR548AX-201ENST00000580117 73 ntBASIC-1.04□□□□□ -2.58
CHMP4AQ9BY43 MIR4436A-201ENST00000585278 85 ntBASIC-1.04□□□□□ -2.58
CHMP4AQ9BY43 AC145423.2-201ENST00000610631 239 ntBASIC-1.04□□□□□ -2.58
CHMP4AQ9BY43 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.05□□□□□ -2.58
CHMP4AQ9BY43 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.05□□□□□ -2.58
CHMP4AQ9BY43 SNORD42B-201ENST00000458893 67 ntBASIC-1.05□□□□□ -2.58
CHMP4AQ9BY43 SNORA40.17-201ENST00000517256 115 ntBASIC-1.05□□□□□ -2.58
CHMP4AQ9BY43 RNA5SP169-201ENST00000517268 117 ntBASIC-1.05□□□□□ -2.58
CHMP4AQ9BY43 AC103810.7-201ENST00000607821 91 ntBASIC-1.05□□□□□ -2.58
CHMP4AQ9BY43 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.06□□□□□ -2.58
CHMP4AQ9BY43 MIR548U-201ENST00000390728 81 ntBASIC-1.06□□□□□ -2.58
CHMP4AQ9BY43 RNU6-1133P-201ENST00000410963 100 ntBASIC-1.06□□□□□ -2.58
CHMP4AQ9BY43 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.07□□□□□ -2.58
CHMP4AQ9BY43 RNU6-132P-201ENST00000383863 107 ntBASIC-1.07□□□□□ -2.58
CHMP4AQ9BY43 RNU6-813P-201ENST00000384691 107 ntBASIC-1.07□□□□□ -2.58
CHMP4AQ9BY43 MIR548A3-201ENST00000385297 97 ntBASIC-1.07□□□□□ -2.58
CHMP4AQ9BY43 SNORA3B-201ENST00000391305 131 ntBASIC-1.07□□□□□ -2.58
CHMP4AQ9BY43 AC097510.1-201ENST00000510945 133 ntBASIC-1.07□□□□□ -2.58
CHMP4AQ9BY43 SNORD33.1-201ENST00000516213 88 ntBASIC-1.07□□□□□ -2.58
CHMP4AQ9BY43 MIR3914-2-201ENST00000637339 95 ntBASIC-1.07□□□□□ -2.58
CHMP4AQ9BY43 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.08□□□□□ -2.58
CHMP4AQ9BY43 RNU7-55P-201ENST00000459426 62 ntBASIC-1.08□□□□□ -2.58
CHMP4AQ9BY43 RNU6-255P-201ENST00000516957 105 ntBASIC-1.08□□□□□ -2.58
CHMP4AQ9BY43 RNU6-644P-201ENST00000391155 98 ntBASIC-1.09□□□□□ -2.58
CHMP4AQ9BY43 AL078595.1-201ENST00000404458 226 ntBASIC-1.09□□□□□ -2.58
CHMP4AQ9BY43 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.09□□□□□ -2.58
CHMP4AQ9BY43 MIR4280-201ENST00000582178 76 ntBASIC-1.09□□□□□ -2.58
CHMP4AQ9BY43 RNU6-80P-201ENST00000384195 107 ntBASIC-1.1□□□□□ -2.59
CHMP4AQ9BY43 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.1□□□□□ -2.59
CHMP4AQ9BY43 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.1□□□□□ -2.59
CHMP4AQ9BY43 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.1□□□□□ -2.59
CHMP4AQ9BY43 SNORD38.3-201ENST00000516599 73 ntBASIC-1.1□□□□□ -2.59
CHMP4AQ9BY43 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.11□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms