Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MTATP8P2-201ENST00000435212 202 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 AC093423.1-201ENST00000440817 142 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 MIR2113-201ENST00000459007 91 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 RNA5SP67-201ENST00000516422 131 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 RNU7-153P-201ENST00000516455 62 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 RNU6-267P-201ENST00000516714 103 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 NAMPTP3-201ENST00000569273 224 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 MIR548AE1-201ENST00000583292 70 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 MIR3140-201ENST00000583685 90 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 AP001318.4-201ENST00000616637 121 ntBASIC0.16□□□□□ -2.38
CDX2Q99626 Y_RNA.107-201ENST00000363190 121 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 RNU4-36P-201ENST00000364294 144 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 RNU6-153P-201ENST00000364422 104 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 SNORD45B-201ENST00000364617 72 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 RNU6-49P-201ENST00000384256 107 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 SNORD38.2-201ENST00000384470 69 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 MIR501-201ENST00000390204 84 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 MIR548H2-201ENST00000408874 88 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 RNA5SP266-201ENST00000410273 108 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 RNA5SP89-201ENST00000410300 108 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 Y_RNA.609-201ENST00000410669 89 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 AL031737.1-201ENST00000450125 223 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 SNORD4B-201ENST00000459083 72 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 RNU7-13P-201ENST00000516413 62 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 RNU6-412P-201ENST00000516434 106 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 RNU5B-6P-201ENST00000516765 68 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 MIR3925-201ENST00000584674 77 ntBASIC0.15□□□□□ -2.39
CDX2Q99626 Y_RNA.495-201ENST00000384435 112 ntBASIC0.14□□□□□ -2.39
CDX2Q99626 MIR106A-201ENST00000384870 81 ntBASIC0.14□□□□□ -2.39
CDX2Q99626 MIR548L-201ENST00000408303 86 ntBASIC0.14□□□□□ -2.39
CDX2Q99626 MIR1295A-201ENST00000408463 79 ntBASIC0.14□□□□□ -2.39
CDX2Q99626 RNU2-59P-201ENST00000410482 191 ntBASIC0.14□□□□□ -2.39
CDX2Q99626 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.14□□□□□ -2.39
CDX2Q99626 Y_RNA.648-201ENST00000459455 110 ntBASIC0.14□□□□□ -2.39
CDX2Q99626 AC104692.1-201ENST00000472406 90 ntBASIC0.14□□□□□ -2.39
CDX2Q99626 MIR371B-201ENST00000638082 66 ntBASIC0.14□□□□□ -2.39
CDX2Q99626 RNU6-664P-201ENST00000362381 107 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 RNU1-141P-201ENST00000364623 158 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 MIR643-201ENST00000385267 97 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 MIR760-201ENST00000390220 80 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 RNU6-127P-201ENST00000390897 107 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 AC073261.1-201ENST00000429409 121 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 snoU13.17-201ENST00000458802 104 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 RNU7-129P-201ENST00000516128 62 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 MIR548AI-201ENST00000579940 88 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 MIR3064-201ENST00000581130 66 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 MIR4473-201ENST00000583731 91 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 RNU7-10P-201ENST00000607194 63 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.13□□□□□ -2.39
CDX2Q99626 Y_RNA.81-201ENST00000362997 102 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 RNU6-1125P-201ENST00000363601 107 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 RNU6-1131P-201ENST00000364955 107 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 RNU6-54P-201ENST00000365563 107 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 SNORD101-201ENST00000384027 73 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 RNU6-480P-201ENST00000384332 107 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 MIR617-201ENST00000385030 97 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.12□□□□□ -2.39
CDX2Q99626 Y_RNA.596-201ENST00000410462 109 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 RNU6-887P-201ENST00000410660 100 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 SNORD71-201ENST00000411292 86 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 SNORD42B-201ENST00000458893 67 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 AC097510.1-201ENST00000510945 133 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 RNU6-168P-201ENST00000516189 101 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 RNU6-762P-201ENST00000517107 102 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 MIR4536-1-201ENST00000583537 88 ntBASIC0.12□□□□□ -2.39
CDX2Q99626 Y_RNA.93-201ENST00000363066 109 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 RNU4-32P-201ENST00000363404 141 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 RNU6-466P-201ENST00000391224 103 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 SNORD110-201ENST00000408189 75 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 FGF7P7-201ENST00000514120 227 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 SNORA18.5-201ENST00000516616 101 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 RNU6-135P-201ENST00000516769 101 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 Y_RNA.705-201ENST00000516862 110 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 AC069113.3-201ENST00000521019 150 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 YWHAEP2-201ENST00000580066 112 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 MIR4439-201ENST00000583746 80 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 MALAT1.1-201ENST00000618249 95 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 Y_RNA.818-201ENST00000618813 71 ntBASIC0.11□□□□□ -2.39
CDX2Q99626 SNORA9.1-201ENST00000362412 131 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 RNA5SP128-201ENST00000365305 116 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 MIR582-201ENST00000365731 98 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 RNU6V-201ENST00000384105 107 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 SNORA24B-201ENST00000384176 131 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 Y_RNA.457-201ENST00000384237 111 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 MIR451A-201ENST00000385059 72 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 RNU6-402P-201ENST00000410678 103 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 RNU6-65P-201ENST00000516332 98 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 MIR4677-201ENST00000584153 80 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 AC104996.3-201ENST00000590718 94 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 RN7SL660P-201ENST00000614852 299 ntBASIC0.1□□□□□ -2.39
CDX2Q99626 Y_RNA.10-201ENST00000362371 110 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 RNU6-1298P-201ENST00000362456 101 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 Y_RNA.73-201ENST00000362910 113 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 SNORA42.1-201ENST00000363515 137 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 RNU6-219P-201ENST00000364728 107 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 MIR652-201ENST00000385278 98 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 MT-TY-201ENST00000387409 66 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 276.4 ms